Contig 006036:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037A01Sequence455006036 (4)563001621 (4)emb|CDP09942.1|2e-14unnamed protein product [Coffea canephora]
JMSF024L21Sequence346006036 (4)649013888 (5)ref|XP_009628960.1|7e-67PREDICTED: scarecrow-like protein 22 [Nicotiana tomentosiformis]
JMSF036K16Sequence410006036 (4)111013888 (5)ref|XP_010941132.1|2e-09PREDICTED: scarecrow-like protein 27 [Elaeis guineensis]
JMSF047C02Sequence171006036 (4)638013888 (5)ref|XP_009343062.1|1e-59PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]

Alignment

This contig is upended


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JMSF047C02+                            GAACCCCGGAAAAAAAAAAAAAAAATCCCCCCTAAGATTTGAA
JMFF037A01+                                      AAAAAAAAAAAAAAATCCCCCCTAAGATTTGAA
                      ____________________________________________________________
consensus                              GAACCCCGGAAAAAAAAAAAAAAAATCCCCCCTAAGATTTGAA
 
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JMSF047C02+           CAAAAAGGAGCTCTTCTTCAATGGCTTATCCCTGAGGAGAAAACACCACCAGTCCCTCTC
JMFF037A01+           CAAAAAGGAGCTCTTCTTCAANGGCTTATCCCTGAGGAGAAAACACCACCAGTCCCTCTC
                      ____________________________________________________________
consensus             CAAAAAGGAGCTCTTCTTCAATGGCTTATCCCTGAGGAGAAAACACCACCAGTCCCTCTC
 
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JMSF047C02+           CCTAGCAAACTCACCCATATCACCATTTCAGCTCCATATCTGCACCTCAAAAACTCTGTA
JMSF036K16+                         CCATATCACCATTTCAGCTCCATATCTGCACCTCAAAAACTCTGTA
JMSF024L21+                         CCATATCACCATTTCAGCTCCATAACTGCACCTCAAAAACTCTGTA
JMFF037A01+           CCTAGCAAACTCACCCATATCACCATTTCAGCTCCATATCTGCACCTCAAAAACTCTGTA
                      ____________________________________________________________
consensus             CCTAGCAAACTCACCCATATCACCATTTCAGCTCCATATCTGCACCTCAAAAACTCTGTA
 
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JMSF047C02+           CAACAAC                                                     
JMSF036K16+           CAACAACAACAACACTACCCTTTCTTCTTCTTCTTCTTCTCTGTGGCTCTCTTTTTATGT
JMSF024L21+           CAACAACAACAACACTACCCTTTCTTCTTCTTCTTCTTCTCTGTGGCTCTCTTTTTATGT
JMFF037A01+           CAACAACAACAACACTACCCTTTCTTCTTCTTCTTCTTCTCTGTGGCTCTCTTTTTATGT
                      ____________________________________________________________
consensus             CAACAACAACAACACTACCCTTTCTTCTTCTTCTTCTTCTCTGTGGCTCTCTTTTTATGT
 
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JMSF036K16+           GGCTACTGTGTAATCTCTAGTCCCTAGGCTTTAGGGGCCGGTGCTACTGTGAAGTATGAA
JMSF024L21+           GGCTACTGTGTAATCTCTAGTCCCTAGGCTTTAGGGGCCGGTGCTACTGTGAAGTATGAA
JMFF037A01+           GGCTACTGTGTAATCTCTAGTCCCTAGGCTTTAGGGGCCGGTGCTACTGTGAAGTATGAA
                      ____________________________________________________________
consensus             GGCTACTGTGTAATCTCTAGTCCCTAGGCTTTAGGGGCCGGTGCTACTGTGAAGTATGAA
 
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JMSF036K16+           TCCCCCCTTGGGCCTTCCCTCCCTCCCTCTCTCTTGCGCTTCTGCAGCAGTAGTACTGTG
JMSF024L21+           TCCCCCCTTGGGCCTTCCCTCCCTCCCTCTCTCTTGCGCTTCTGCAGCAGTAGTACTGT 
JMFF037A01+           TCCCCCCTTGGGCCTTCCCTCCCTCCCTCTCTCTTGCGCTTCTGCAGCAGTAGTACTGTG
                      ____________________________________________________________
consensus             TCCCCCCTTGGGCCTTCCCTCCCTCCCTCTCTCTTGCGCTTCTGCAGCAGTAGTACTGTG
 
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JMSF036K16+           TACCCTCCTCTCTCTCTCTCTCTCTGTTCTGCCACGGATGCGTGCATCATAAAAAAAGGT
JMFF037A01+           TACCCTCCTCTCTCTCTCTCTCTCTGTTCTGCCACGGATGCGTGCATCATAAAAAAAGGT
                      ____________________________________________________________
consensus             TACCCTCCTCTCTCTCTCTCTCTCTGTTCTGCCACGGATGCGTGCATCATAAAAAAAGGT
 
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JMSF036K16+           AACA                                                        
JMFF037A01+           AACATAAGTGGCCCTCTTCCCTCTCTCCTCTCTTCTTCTCCCTTGTCTATTTCTCCCCCC
                      ____________________________________________________________
consensus             AACATAAGTGGCCCTCTTCCCTCTCTCCTCTCTTCTTCTCCCTTGTCTATTTCTCCCCCC