Contig 006035:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E13-                     CTTTCCCATCTTGAATAGTTCCTTTATCTCGTCATCTTCTTCGCCTTCT
rJMFF036J11-                                               TCTCGTCATCTTCTTCGNCTTCT
                      ____________________________________________________________
consensus                        CTTTCCCATCTTGAATAGTTCCTTTATCTCGTCATCTTCTTCGCCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E13-          TCTGCCTGTGGATAGCTTCCAGGAGATCGTTGTTCATGGTCACTTCCGTATCTGTCAGCA
rJMFF036J11-          TCTGCCTGTGGATAGCTTCCAGGAGATCGTTGTTCATGGTCACTTCCGTATCTGTCAGCA
                      ____________________________________________________________
consensus             TCTGCCTGTGGATAGCTTCCAGGAGATCGTTGTTCATGGTCACTTCCGTATCTGTCAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E13-          GGATCTAAACCACTATCATCTATGAAGTTATCGTCATCCACTGTCTTAGCACCATCTCGG
rJMFF036J11-          GGATCTAAACCACTATCATCTATGAAGTTATCGTCATCCACTGTCTTANNACCATCTCGG
JMFF050E13+                                ATGAAGTNATCGTCATCCACTGTCTANGCACCATCTCGG
                      ____________________________________________________________
consensus             GGATCTAAACCACTATCATCTATGAAGTTATCGTCATCCACTGTCTTAGCACCATCTCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E13-          TCATCCTCAGAATCTCCCCCAGCAACAGTGTCCCACAACTCCTTCAGCTCCTGATCACCA
rJMFF036J11-          TCATCCTCAGAATCTCCCCCAGCAACAGTGTCCCACAACTCCTTCAGCTCCTGATCACCA
JMFF050E13+           TCATCCTCAGAATCTCCCCCAGCAACAGTGTCCCACAACTCCTTCAGCTCCTGATCACCA
                      ____________________________________________________________
consensus             TCATCCTCAGAATCTCCCCCAGCAACAGTGTCCCACAACTCCTTCAGCTCCTGATCACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E13-          TCATTGCCCCTCCGGCCTGCGCCAGAGTACCCTCCTCCATTCTTCCTCACCTTGAACTTT
rJMFF036J11-          TCATTGCCCCTCCGGCCTGCGCCAGAGTACCCTCCTCCATTCTTCCTCACCTTGAACTTT
JMFF050E13+           TCATTGCCCCTCCGGCCTGCGCCAGAGTACCCTCCTCCATTCTTCCTCACCTTGAACTTT
                      ____________________________________________________________
consensus             TCATTGCCCCTCCGGCCTGCGCCAGAGTACCCTCCTCCATTCTTCCTCACCTTGAACTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E13-          TTCTCACCTTTATCCCTCTTCTTCTCTTTCCTCTTCTCCCCACCGCTCTCCTTCTCAAAC
rJMFF036J11-          TTCTCACCTTTATCCCTCTTCTTCTCTTTCCTCTTCTCCCCACCGCTCTCCTTCTCAAAC
JMFF050E13+           TTCTCACCTTTATCCCTCTTCTTCTCTTTCCTCTTCTCCCCACCGCTCTCCTTCTCAAAC
                      ____________________________________________________________
consensus             TTCTCACCTTTATCCCTCTTCTTCTCTTTCCTCTTCTCCCCACCGCTCTCCTTCTCAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E13-          CGTTTCCTCTTCCCACCGTCAGAATACGAAGGTCCACCGCCATCAGACTCATCTCTTACC
rJMFF036J11-          CGTTTCCTCTTCCCACCGTCAGAATACGAAGGTCCACCGCCATCAGACTCATCTCTTACC
JMFF050E13+           CGTTTCCTCTTCCCACCGTCAGAATACGAAGGTCCACCGCCATCAGACTCATCTCTTACC
JMFF036J11+                          CCGTCAGAATACGAAGGTCCACCGCCATCAGACTCATCTNTTACC
                      ____________________________________________________________
consensus             CGTTTCCTCTTCCCACCGTCAGAATACGAAGGTCCACCGCCATCAGACTCATCTCTTACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E13-          ATCCCCGCCATCCCATCATCATAAGCATCCTCATCCGCAAACCCAAGATCCGGTGCGGTC
rJMFF036J11-          ATCCCCGCCATCCCATCATCATAAGCATCCTCATCCGCAAACCCAAGATCCGGTGCGGTC
JMFF050E13+           ATCCCCGCCATCCCATCATCATAAGCATCCTCATCCGCAAACCCAAGATCCGGTGCGGTC
JMFF036J11+           ATCCCCGCCATCCCATCATCATAAGCATCCTCATCCGCAAACCCAAGATCCGGTGCGGTN
                      ____________________________________________________________
consensus             ATCCCCGCCATCCCATCATCATAAGCATCCTCATCCGCAAACCCAAGATCCGGTGCGGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E13-          TCTTTCCCACCACCGGACTTCTTAATCAACCGCTTCCGGGGCTTCGATTTGTAATCGTCG
rJMFF036J11-          TCTTTCCCACCACCGGACTTCTTAATCAACCGCTTCCGGGGCTTCGATTTGTAATCGTCG
JMFF050E13+           TCTTTCCCACCACCGGACTTCTTAATCAACCGCTTCCGGGGCTTCGATTTGTAATCGTCG
JMFF036J11+           TCTTTCCCNCCNCCGGACTTNTTAATCAACCGCTTCCGGGGCTTCGATTTGTAATCGTCG
                      ____________________________________________________________
consensus             TCTTTCCCACCACCGGACTTCTTAATCAACCGCTTCCGGGGCTTCGATTTGTAATCGTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E13-          TCATAAACAGGGGTCGGCGAGCGTTCGCGCTGCCGCTGGTCCCATCCATCGTCATCAAGG
rJMFF036J11-          TCATAAACAGGGGTCGGCGAGCGTTCGCGCTGCCGCTGGTCCCATCCATCGTCATCAAGG
JMFF050E13+           TCATAAACAGGGGTCGGCGAGCGTTCGCGCTGCCGCTGGTCCCATCCATCGTCATCAAGG
JMFF036J11+           TCATAAACAGGGGTCGGCGAGCGTTCGCGCTGCCGCTGGTCCCATCCATCGTCATCAAGG
                      ____________________________________________________________
consensus             TCATAAACAGGGGTCGGCGAGCGTTCGCGCTGCCGCTGGTCCCATCCATCGTCATCAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF050E13-          ATATTGTCCTGGGGATCGTGATCGGACT                                
rJMFF036J11-          ATATTGTCCTGGGGATCGTGATCGGACTGGATATCCTCATCAAAGTCCACCAATCCCTCT
JMFF050E13+           ATATTGTCCTGGGGATCGTGATCGGACTGGATATCCTCATCAAAGTCCACCAATCCCTCT
JMFF036J11+           ATATTGTCCTGGGGATCGTGATCGGACTGGATATCCTCATCAAAGTCCACCAATCCCTCT
                      ____________________________________________________________
consensus             ATATTGTCCTGGGGATCGTGATCGGACTGGATATCCTCATCAAAGTCCACCAATCCCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF036J11-          CCGTCCTCGTCTCTGTACGGATCGTTTTCGTAACCCATGGCCGAGTGTTCTTGCTGCTGA
JMFF050E13+           CCGTCCTCGTCTCTGTACGGATCGTTTTCGTAACCCATGGCCGAGTGTTCTTGCTGCTGA
JMFF036J11+           CCGTCCTCGTCTCTGTACGGATCGTTTTCGTAACCCATGGCCGAGTGTTCTTGCTGCTGA
                      ____________________________________________________________
consensus             CCGTCCTCGTCTCTGTACGGATCGTTTTCGTAACCCATGGCCGAGTGTTCTTGCTGCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF036J11-          GAAGA                                                       
JMFF050E13+           GAAGAGGAGAGATCTTTGGATTAGGTTTTTTTTTTCTTTTTTGTTCTTTTAATTTT    
JMFF036J11+           GAAGAGGAGAGATCTTTGGATTAGGTTTTTTTTTTCTTTTTTGTTCTTTTAATTTTTAGC
                      ____________________________________________________________
consensus             GAAGAGGAGAGATCTTTGGATTAGGTTTTTTTTTTCTTTTTTGTTCTTTTAATTTTTAGC