Contig 006032:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009P24Sequence562006032 (6)ref|XP_004240846.1|1e-61PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum]754001191 (5)ref|XP_009778770.1|4e-110PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris]
JMFF021I09Sequence575006032 (6)ref|XP_004240846.1|2e-62PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum]724001191 (5)ref|XP_009778770.1|4e-108PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris]
JMFF030O03Sequence540006032 (6)ref|XP_004240846.1|1e-57PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum]720001191 (5)ref|XP_009778770.1|6e-105PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris]
JMFF036C22Sequence549006032 (6)ref|XP_004240846.1|1e-58PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum]
JMFF037H22Sequence564006032 (6)ref|XP_004240846.1|2e-62PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum]772001191 (5)ref|XP_009778770.1|1e-104PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris]
JMFF043J20Sequence609006032 (6)ref|XP_004240846.1|4e-62PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum]563001191 (5)ref|XP_009590667.1|4e-64PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF043J20+ TCTTTGGTTTACATTTTCTGC
                      ____________________________________________________________
consensus TCTTTGGTTTACATTTTCTGC
 
. : . : . : . : . : . :
JMFF037H22+ GCTCAGGATTTTTTACATTTGAATCTACTTCTGCCTT
JMFF009P24+ GCTCAGGATTTTTTACATTTGAATCTACTTCTGCCTT
JMFF043J20+ ACTACCAGACTCTTTCTTCCCCTGCTCAGGATTTTTTACATTTGAATCTACTTCTGCCTT
JMFF030O03+ CTT
JMFF021I09+ GCTCAGGATTTTTTACATTTGAATCTACTTCTGCCTT
JMFF036C22+ ATCTACTTCTGCCTT
                      ____________________________________________________________
consensus ACTACCAGACTCTTTCTTCCCCTGCTCAGGATTTTTTACATTTGAATCTACTTCTGCCTT
 
. : . : . : . : . : . :
JMFF037H22+ CTTCATAACTTTCACTACAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTCTTTCAAA
JMFF009P24+ CTTCATAACTTTCACTACAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTCTTTCAAA
JMFF043J20+ CTTCATAACTTTCACTACAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTCTTTCAAA
JMFF030O03+ CTTCATAACTTTCACTANAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTNTTTCAAA
JMFF021I09+ CTTCATAACTTTCACTACAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTCTTTCAAA
JMFF036C22+ CTTCATAACTTTCACTACAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTCTTTCAAA
                      ____________________________________________________________
consensus CTTCATAACTTTCACTACAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTCTTTCAAA
 
. : . : . : . : . : . :
JMFF037H22+ TAGATTTGCCACATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
JMFF009P24+ TAGATTTGCCACATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
JMFF043J20+ TAGATTTGCCACATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
JMFF030O03+ TAGATTTGCCNCATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
JMFF021I09+ TAGATTTGCCACATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
JMFF036C22+ TAGATTTGCCACATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
                      ____________________________________________________________
consensus TAGATTTGCCACATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
 
. : . : . : . : . : . :
JMFF037H22+ TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
JMFF009P24+ TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
JMFF043J20+ TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
JMFF030O03+ TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
JMFF021I09+ TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
JMFF036C22+ TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
                      ____________________________________________________________
consensus TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
 
. : . : . : . : . : . :
JMFF037H22+ GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
JMFF009P24+ GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
JMFF043J20+ GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
JMFF030O03+ GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
JMFF021I09+ GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
JMFF036C22+ GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
                      ____________________________________________________________
consensus GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
 
. : . : . : . : . : . :
JMFF037H22+ TTCGTTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
JMFF009P24+ TTCGCTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
JMFF043J20+ TTCGCTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
JMFF030O03+ TTCGTTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
JMFF021I09+ TTCGTTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
JMFF036C22+ TTCGTTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
                      ____________________________________________________________
consensus TTCGTTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
 
. : . : . : . : . : . :
JMFF037H22+ AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
JMFF009P24+ AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
JMFF043J20+ AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
JMFF030O03+ AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
JMFF021I09+ AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
JMFF036C22+ AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
                      ____________________________________________________________
consensus AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
 
. : . : . : . : . : . :
JMFF037H22+ GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCTGGATTCCTCAAAAACTGTTT
JMFF009P24+ GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCTGGATTCCTCAAAAACTGTTT
JMFF043J20+ GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCTGGATTCCTCAAAAACTGTTT
JMFF030O03+ GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCNGGATTCCTCAAAAACTGTTT
JMFF021I09+ GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCTGGATTCCTCAAAAACTGTTT
JMFF036C22+ GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCTGGATTCCTCAAAAA------
                      ____________________________________________________________
consensus GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCTGGATTCCTCAAAAACTGTTT
 
. : . : . : . : . : . :
JMFF037H22+ TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
JMFF009P24+ TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
JMFF043J20+ TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
JMFF030O03+ TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
JMFF021I09+ TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
JMFF036C22+ TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
                      ____________________________________________________________
consensus TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
 
. : . : . : . : . : . :
JMFF037H22+ CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCTTCTC
JMFF009P24+ CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCT
JMFF043J20+ CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCTTCTC
JMFF030O03+ CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCTTCTCAATTCTCA
JMFF021I09+ CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCTTCTCAATTCTCA
JMFF036C22+ CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCTTCTCAATTCTCATTCTGCC
                      ____________________________________________________________
consensus CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCTTCTCAATTCTCATTCTGCC