| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009P24 | Sequence | 562 | 006032 (6) | ref|XP_004240846.1| | 1e-61 | PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum] | 754 | 001191 (5) | ref|XP_009778770.1| | 4e-110 | PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris] |
| JMFF021I09 | Sequence | 575 | 006032 (6) | ref|XP_004240846.1| | 2e-62 | PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum] | 724 | 001191 (5) | ref|XP_009778770.1| | 4e-108 | PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris] |
| JMFF030O03 | Sequence | 540 | 006032 (6) | ref|XP_004240846.1| | 1e-57 | PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum] | 720 | 001191 (5) | ref|XP_009778770.1| | 6e-105 | PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris] |
| JMFF036C22 | Sequence | 549 | 006032 (6) | ref|XP_004240846.1| | 1e-58 | PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum] | |||||
| JMFF037H22 | Sequence | 564 | 006032 (6) | ref|XP_004240846.1| | 2e-62 | PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum] | 772 | 001191 (5) | ref|XP_009778770.1| | 1e-104 | PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris] |
| JMFF043J20 | Sequence | 609 | 006032 (6) | ref|XP_004240846.1| | 4e-62 | PREDICTED: tRNA-aminoacylation cofactor arc1 isoform X2 [Solanum lycopersicum] | 563 | 001191 (5) | ref|XP_009590667.1| | 4e-64 | PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein |
This contig is upended
. : . : . : . : . : . :
JMFF043J20+ TCTTTGGTTTACATTTTCTGC
____________________________________________________________
consensus TCTTTGGTTTACATTTTCTGC
. : . : . : . : . : . :
JMFF037H22+ GCTCAGGATTTTTTACATTTGAATCTACTTCTGCCTT
JMFF009P24+ GCTCAGGATTTTTTACATTTGAATCTACTTCTGCCTT
JMFF043J20+ ACTACCAGACTCTTTCTTCCCCTGCTCAGGATTTTTTACATTTGAATCTACTTCTGCCTT
JMFF030O03+ CTT
JMFF021I09+ GCTCAGGATTTTTTACATTTGAATCTACTTCTGCCTT
JMFF036C22+ ATCTACTTCTGCCTT
____________________________________________________________
consensus ACTACCAGACTCTTTCTTCCCCTGCTCAGGATTTTTTACATTTGAATCTACTTCTGCCTT
. : . : . : . : . : . :
JMFF037H22+ CTTCATAACTTTCACTACAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTCTTTCAAA
JMFF009P24+ CTTCATAACTTTCACTACAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTCTTTCAAA
JMFF043J20+ CTTCATAACTTTCACTACAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTCTTTCAAA
JMFF030O03+ CTTCATAACTTTCACTANAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTNTTTCAAA
JMFF021I09+ CTTCATAACTTTCACTACAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTCTTTCAAA
JMFF036C22+ CTTCATAACTTTCACTACAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTCTTTCAAA
____________________________________________________________
consensus CTTCATAACTTTCACTACAGGAGGGTCAAATTCAACCTTCTCAAGTTTGATTCTTTCAAA
. : . : . : . : . : . :
JMFF037H22+ TAGATTTGCCACATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
JMFF009P24+ TAGATTTGCCACATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
JMFF043J20+ TAGATTTGCCACATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
JMFF030O03+ TAGATTTGCCNCATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
JMFF021I09+ TAGATTTGCCACATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
JMFF036C22+ TAGATTTGCCACATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
____________________________________________________________
consensus TAGATTTGCCACATCAACCATGTTCTGGATGTAATCCACCCATCTAAGCAAATGTGGTAA
. : . : . : . : . : . :
JMFF037H22+ TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
JMFF009P24+ TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
JMFF043J20+ TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
JMFF030O03+ TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
JMFF021I09+ TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
JMFF036C22+ TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
____________________________________________________________
consensus TTTGTCTTGATCCAACTTTGAAAGGCCAATCACAGATGAGTGAACAGTGGAAAAGACAAT
. : . : . : . : . : . :
JMFF037H22+ GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
JMFF009P24+ GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
JMFF043J20+ GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
JMFF030O03+ GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
JMFF021I09+ GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
JMFF036C22+ GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
____________________________________________________________
consensus GATATCAGCAGCTGAATGCTCAAACCCATTGCCTAAAAGAACAGATATTTTAACCAATTC
. : . : . : . : . : . :
JMFF037H22+ TTCGTTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
JMFF009P24+ TTCGCTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
JMFF043J20+ TTCGCTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
JMFF030O03+ TTCGTTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
JMFF021I09+ TTCGTTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
JMFF036C22+ TTCGTTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
____________________________________________________________
consensus TTCGTTCAATTCACTGAGTGCTTTAAAGCAAGGCTCTGAATCCCCTGGGAATTTGTCAGC
. : . : . : . : . : . :
JMFF037H22+ AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
JMFF009P24+ AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
JMFF043J20+ AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
JMFF030O03+ AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
JMFF021I09+ AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
JMFF036C22+ AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
____________________________________________________________
consensus AAACTCTATCCACTTCATGAGCTCATTATCCTTTAACAAGGCAGCACCACTGGGGGTTGA
. : . : . : . : . : . :
JMFF037H22+ GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCTGGATTCCTCAAAAACTGTTT
JMFF009P24+ GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCTGGATTCCTCAAAAACTGTTT
JMFF043J20+ GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCTGGATTCCTCAAAAACTGTTT
JMFF030O03+ GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCNGGATTCCTCAAAAACTGTTT
JMFF021I09+ GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCTGGATTCCTCAAAAACTGTTT
JMFF036C22+ GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCTGGATTCCTCAAAAA------
____________________________________________________________
consensus GCTGATAATTTCTATACACAAACTCTTGATATCTTTCTCTGGATTCCTCAAAAACTGTTT
. : . : . : . : . : . :
JMFF037H22+ TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
JMFF009P24+ TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
JMFF043J20+ TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
JMFF030O03+ TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
JMFF021I09+ TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
JMFF036C22+ TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
____________________________________________________________
consensus TGGATCCAATGATAGCTCTTTGCAGAGAGCCGTGGCAATAAGTTGCTTACGATTAGACGC
. : . : . : . : . : . :
JMFF037H22+ CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCTTCTC
JMFF009P24+ CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCT
JMFF043J20+ CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCTTCTC
JMFF030O03+ CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCTTCTCAATTCTCA
JMFF021I09+ CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCTTCTCAATTCTCA
JMFF036C22+ CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCTTCTCAATTCTCATTCTGCC
____________________________________________________________
consensus CATTGTTACGCGCTCGACTCACTCCTCGGTCTGCTCTTGCTTCTCAATTCTCATTCTGCC