| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027E10 | Sequence | 531 | 006031 (3) | ref|XP_004236745.1| | 1e-42 | PREDICTED: protein kinase APK1A, chloroplastic [Solanum lycopersicum] | 466 | 009467 (7) | |||
| JMFF035P03 | Sequence | 527 | 006031 (3) | gb|AIU96237.1| | 1e-07 | serine/threonine-protein kinase BIK1, partial [Nicotiana benthamiana] | 632 | 009467 (7) | ref|XP_009759469.1| | 1e-26 | PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris] |
| JMFF051M11 | Sequence | 648 | 006031 (3) | ref|XP_004236745.1| | 1e-65 | PREDICTED: protein kinase APK1A, chloroplastic [Solanum lycopersicum] | 381 | 009467 (7) | |||
This contig is upended
. : . : . : . : . : . :
JMFF051M11+ AGATTGGGATGGGATAGCTGCC
____________________________________________________________
consensus AGATTGGGATGGGATAGCTGCC
. : . : . : . : . : . :
JMFF051M11+ CGAGGTAAGTAATCTCTGTCAGCCATTCCTTGTGACCTGAAGGCNCTTCTGATTTCAGTC
____________________________________________________________
consensus CGAGGTAAGTAATCTCTGTCAGCCATTCCTTGTGACCTGAAGGCNCTTCTGATTTCAGTC
. : . : . : . : . : . :
JMFF027E10+ GGCTGCCTTGAACGTATTCTCGTCAA
JMFF051M11+ TCTTCACGGCTATTATCAATCCAGTCCCGGGCCTGGCTGCCTTGAACGTATTCTCGTCAA
____________________________________________________________
consensus TCTTCACGGCTATTATCAATCCAGTCCCGGGCCTGGCTGCCTTGAACGTATTCTCGTCAA
. : . : . : . : . : . :
JMFF027E10+ TCCATCCCTTGAAGACACAACCGAAACCTCCTTCCCCCAACACACTATCGGGCCGGAAGT
JMFF051M11+ TCCATCCCTTGAAGACACAACCGAAACCTCCTTCCCCCAACACACTATCGGGCCGGAAGT
____________________________________________________________
consensus TCCATCCCTTGAAGACACAACCGAAACCTCCTTCCCCCAACACACTATCGGGCCGGAAGT
. : . : . : . : . : . :
JMFF027E10+ TTCTGGTGGCTATTTTGAGTTCATTGAAAGTAAAGTTCTTAAGATTCGATGAGTCCAGAA
JMFF051M11+ TTCTGGTGGCTATTTTGAGTTCATTGAAAGTAAAGTTCTTAAGATTCGATGAGTCCAGAA
____________________________________________________________
consensus TTCTGGTGGCTATTTTGAGTTCATTGAAAGTAAAGTTCTTAAGATTCGATGAGTCCAGAA
. : . : . : . : . : . :
JMFF027E10+ TATCACTCTCTTTCCTAGGGGTCATTGGGGCCGAGGCAAACGAAAGTCTTTTGCTCAACT
JMFF051M11+ TATCACTCTCTTTCCTAGGGGTCATTGGGGCCGAGGCAAACGAAAGTCTTTTGCTCAACT
JMFF035P03+ CCTAGGGGTCATTGGGGCCGAGGCAAACGAAAGTCTTTTGCTCAACT
____________________________________________________________
consensus TATCACTCTCTTTCCTAGGGGTCATTGGGGCCGAGGCAAACGAAAGTCTTTTGCTCAACT
. : . : . : . : . : . :
JMFF027E10+ CTTTAGCTCCAGTATGGAGAGGGCTCTCTGCCTTAATTCTGACACTGAAACAAGAACCCA
JMFF051M11+ CTTTAGCTCCAGTATGGAGAGGGCTCTCTGCCTTAATTCTGACACTGAAACAAGAACCCA
JMFF035P03+ CTTTAGCTCCAGTATGGAGAGGGCTCTCTGCCTTAATTCTGACACTGAAACAAGAACCCA
____________________________________________________________
consensus CTTTAGCTCCAGTATGGAGAGGGCTCTCTGCCTTAATTCTGACACTGAAACAAGAACCCA
. : . : . : . : . : . :
JMFF027E10+ TGAATTTGATCAATCTTTCTCTCTCTCTCTCTGCTTCTCTTTCGGTCTTTCCTCCAAGAA
JMFF051M11+ TGAATTTGATCAATCTTTCTCTCTCTCTCTCTGCTTCTCTTTCGGTCTTTCCTCCAAGAA
JMFF035P03+ TGAATTTGATCAATCTTTCTCTCTCTCTCTCTGCTTCTCTTTCGGTCTTTCCTCCAAGAA
____________________________________________________________
consensus TGAATTTGATCAATCTTTCTCTCTCTCTCTCTGCTTCTCTTTCGGTCTTTCCTCCAAGAA
. : . : . : . : . : . :
JMFF027E10+ AAGAGCTTTCTTTGGCTTCTTAAACCCTTGGAAAATAGCAGTGGTTCTTGAATGATTCTA
JMFF051M11+ AAGAGCTTTCTTTGGCTTCTTAAACCCTTGGAAAATAGCAGTGGTTCTTGAATGATTCTA
JMFF035P03+ AAGAGCTTTCTTTGGCTTCTTAAACCCTTGGAAAATAGCAGTGGTTCTTGAATGATTCTA
____________________________________________________________
consensus AAGAGCTTTCTTTGGCTTCTTAAACCCTTGGAAAATAGCAGTGGTTCTTGAATGATTCTA
. : . : . : . : . : . :
JMFF027E10+ AGATAATTGTGTAATAAACCGAGCCACAACAACCAAACCAGATCAGAACACAAAGATGTG
JMFF051M11+ AGATAATTGTGTAATAAACCGAGCCACAACAACCAAACCAGATCAGAACACAAAGATGTG
JMFF035P03+ AGATAATTGTGTAATAAACCGAGCCACAACAACCAAACCAGATCAGAACACAAAGATGTG
____________________________________________________________
consensus AGATAATTGTGTAATAAACCGAGCCACAACAACCAAACCAGATCAGAACACAAAGATGTG
. : . : . : . : . : . :
JMFF027E10+ AACATTTTGAATATTTGTCATTTGTTTGGTTTGTCTTTCACGAGAACCTCTCCTCTTCCA
JMFF051M11+ AACATTTTGAATATTTGTCATTTGTTTGGTTTGTCTTTCACGAGAACCTCTCCTCTTCCA
JMFF035P03+ AACATTTTGAATATTTGTCATTTGTTTGGTTTGTCTTTCACGAGAACCTCTCCTCTTCCA
____________________________________________________________
consensus AACATTTTGAATATTTGTCATTTGTTTGGTTTGTCTTTCACGAGAACCTCTCCTCTTCCA
. : . : . : . : . : . :
JMFF027E10+ GAACCTCACCAACGGCCAAAGCCCT
JMFF051M11+ GAACCTCACCAACGGCCAAAGCCCT
JMFF035P03+ GAACCTCACCAACGGCCAAAGCCCTAAAACGTTTGTTTGACTTGTCCTCGTTTAATCAGT
____________________________________________________________
consensus GAACCTCACCAACGGCCAAAGCCCTAAAACGTTTGTTTGACTTGTCCTCGTTTAATCAGT
. : . : . : . : . : . :
JMFF035P03+ CTGGTCTTCTTCTGCCACCCTCATTTTCTTGTTCACACGCCTCTCCACTCTCCATTAAAC
____________________________________________________________
consensus CTGGTCTTCTTCTGCCACCCTCATTTTCTTGTTCACACGCCTCTCCACTCTCCATTAAAC
. : . : . : . : . : . :
JMFF035P03+ CCACGGTTAAAAGCTTTGCTAACATTTAAAATTTGGAATTAATTAGGTTTTTTTATGTCC
____________________________________________________________
consensus CCACGGTTAAAAGCTTTGCTAACATTTAAAATTTGGAATTAATTAGGTTTTTTTATGTCC