Contig 006028:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035I01Sequence548006028 (3)672014892ref|XP_009615720.1|162PREDICTED: uncharacterized protein LOC104108403 [Nicotiana tomentosiformis]
JMSF024D20Sequence674006028 (3)ref|XP_004249608.1|84.0PREDICTED: uncharacterized protein LOC101258319 [Solanum lycopersicum]794006028 (3)ref|XP_009615720.1|301PREDICTED: uncharacterized protein LOC104108403 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-                                              ATGCATGCAAGGAAACATCAATCT
                      ____________________________________________________________
consensus                                                 ATGCATGCAAGGAAACATCAATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          CAAGCACATTATAGGAAATCCATAGGATGCTCCCAATCGTCGTTTCGTTCTTTGAATTTT
                      ____________________________________________________________
consensus             CAAGCACATTATAGGAAATCCATAGGATGCTCCCAATCGTCGTTTCGTTCTTTGAATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          TTGCGAGAGGAATTTCTCCTTCCGCGTTTGCCATTGTTGGGTTGAGGATGCTGTGTTTCT
                      ____________________________________________________________
consensus             TTGCGAGAGGAATTTCTCCTTCCGCGTTTGCCATTGTTGGGTTGAGGATGCTGTGTTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          TCTAGGTCAGCATAATCTTCCAACTCATCTATAGAGTTCCCTCTATTCTGGCCACTCCAT
                      ____________________________________________________________
consensus             TCTAGGTCAGCATAATCTTCCAACTCATCTATAGAGTTCCCTCTATTCTGGCCACTCCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          AATCCCTTTGTAAGCCTTTGTATGCGTGAGGCTGCAGCTTCTTTGACAACAATGGTATCT
                      ____________________________________________________________
consensus             AATCCCTTTGTAAGCCTTTGTATGCGTGAGGCTGCAGCTTCTTTGACAACAATGGTATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          GATAAAACAGTCACTACATCTTCAACAAATAATCCATAGGTGCTAACCAAACTTGACGGA
                      ____________________________________________________________
consensus             GATAAAACAGTCACTACATCTTCAACAAATAATCCATAGGTGCTAACCAAACTTGACGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          ATCATTGGTATTCCAAATGAATCAACCTCAAGTGACTCCACGACCCCAGAGTTAACGTTA
                      ____________________________________________________________
consensus             ATCATTGGTATTCCAAATGAATCAACCTCAAGTGACTCCACGACCCCAGAGTTAACGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          AAAATGTAATCACGCACCTTTCCAATATTCTGCCGACCTCGTGTTACAACATTGTAACCC
                      ____________________________________________________________
consensus             AAAATGTAATCACGCACCTTTCCAATATTCTGCCGACCTCGTGTTACAACATTGTAACCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          ACCAATGTCTCAAGCCCAGCTAGTCTGAATTGATTTTCCAGCACAGACTCATCCTTGATA
                      ____________________________________________________________
consensus             ACCAATGTCTCAAGCCCAGCTAGTCTGAATTGATTTTCCAGCACAGACTCATCCTTGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          AGGAGAACATCTCCCACCTGTTTGACATCCTCCAGAAGACACCATTCCACTTCTCCAGAG
                      ____________________________________________________________
consensus             AGGAGAACATCTCCCACCTGTTTGACATCCTCCAGAAGACACCATTCCACTTCTCCAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          AGTAAGTTTGGCCTCACTTCAACAAGCAAAACAACCCGGGAATTAATGTCGACCCAGAGC
JMSF024D20+                                                        ATGTCGACCCAGAGC
                      ____________________________________________________________
consensus             AGTAAGTTTGGCCTCACTTCAACAAGCAAAACAACCCGGGAATTAATGTCGACCCAGAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          TGAGAAACAAATCCCAAGCTGAGAGCAGAATTAATGGTGATAACTTGTTTAGCAATCATA
JMSF024D20+           TGAGAAACAAATCCCAAGCTGAGAGCAGAATTAATGGTGATAACTTGTTTAGCAATCATA
                      ____________________________________________________________
consensus             TGAGAAACAAATCCCAAGCTGAGAGCAGAATTAATGGTGATAACTTGTTTAGCAATCATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          CTCGACCTCCTCATCATTTGCCTCCCGCCCTTCACGCTTCGTTTCTCTAGCTTGGAATCA
JMSF024D20+           CTCGACCTCCTCATCATTTGCCTCCCGCCCTTCACGCTTCGTTTCTCTAGCTTGGAATCA
JMFF035I01+                                                               TGGAATCA
                      ____________________________________________________________
consensus             CTCGACCTCCTCATCATTTGCCTCCCGCCCTTCACGCTTCGTTTCTCTAGCTTGGAATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF024D20-          ACATCCCCAGATTCCACTCTACTTCTCACCAATTCTTCATCTTTCACTCG          
JMSF024D20+           ACATCCCCAGATTCCACTCTACTTCTCACCAATTCTTCATCTTTCACTCGACCCACGCCA
JMFF035I01+           ACATCCCCAGATTCCACTCTACTTCTCACCAATTCTTCATCTTTCACTCGACCCACGCCA
                      ____________________________________________________________
consensus             ACATCCCCAGATTCCACTCTACTTCTCACCAATTCTTCATCTTTCACTCGACCCACGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024D20+           TCTTTTCCACTATTCTCCCCATGGAATTCAAGAAAACCATCCTCAATCCCATCCCGGGGA
JMFF035I01+           TCTTTTCCACTATTCTCCCCATGGAATTCAAGAAAACCATCCTCAATCCCATCCCGGGGA
                      ____________________________________________________________
consensus             TCTTTTCCACTATTCTCCCCATGGAATTCAAGAAAACCATCCTCAATCCCATCCCGGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024D20+           CTCAAATTCACGTCTTCATCTTCATCCCTCCGTTCTCTATTCCATTGAATTTCAGTCATT
JMFF035I01+           CTCAAATTCTCGTCTTCATCTTCATCCCTCCGTTCTCTATTCCATTGAATTTCAGTCATT
                      ____________________________________________________________
consensus             CTCAAATTCTCGTCTTCATCTTCATCCCTCCGTTCTCTATTCCATTGAATTTCAGTCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024D20+           ACATCCTCTTTAATCCCAAATTCACCGTAGAATCCATAGTCATCTGAGTTTAAGGGGCTC
JMFF035I01+           ACATCCTCTTTAATCCCAAATTCACCGTAGAATCCATAGTCATCTGAGTTTAAGGGGCTC
                      ____________________________________________________________
consensus             ACATCCTCTTTAATCCCAAATTCACCGTAGAATCCATAGTCATCTGAGTTTAAGGGGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024D20+           GAATTTAGTTTGGCTTTTATAGAAGTGTTCGAACTGGGCTTGAGACGGGCGCTGGCATAC
JMFF035I01+           GAATTTAGTTTGGCTTTTATAGAAGTGTTCGAACTGGGCTTGAGACGGGCGCTGGCATAC
                      ____________________________________________________________
consensus             GAATTTAGTTTGGCTTTTATAGAAGTGTTCGAACTGGGCTTGAGACGGGCGCTGGCATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024D20+           TGCGCCTTGCTCTTTGAATACCAGAGGAAAGGGAGAAATCTTGGTGTTGGTAGAGCATTA
JMFF035I01+           TGCGCCTTGCTCTTTGAATACCAGAGGAAAGGGAGAAATCTTGGTGTTGGTAGAGCATTA
                      ____________________________________________________________
consensus             TGCGCCTTGCTCTTTGAATACCAGAGGAAAGGGAGAAATCTTGGTGTTGGTAGAGCATTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024D20+           AACCCTAGATTACAAGTGGAAATTAGAGACGAATGGGAGAGCAAAGCGGAATGAAGGCAA
JMFF035I01+           AACCCTAGATTACAAGTGGAAATTAGAGACGAATGGGAGAGCAAAGCGGAATGAAGGCAA
                      ____________________________________________________________
consensus             AACCCTAGATTACAAGTGGAAATTAGAGACGAATGGGAGAGCAAAGCGGAATGAAGGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024D20+           TCGCACATGGCGGAAATTCTTGCAAATATGAGAAATATTTTAGATCAGAAACCGAGTGGT
JMFF035I01+           TCGCACATGGCGGAAATTCTTGCAAATATGAGAAATATTTTAGATCAGAAACCGAGTGGT
                      ____________________________________________________________
consensus             TCGCACATGGCGGAAATTCTTGCAAATATGAGAAATATTTTAGATCAGAAACCGAGTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF024D20+           GGAGTTGATTCTTCACTCACCATCGCAGCCATTTCTGTAACTTTCCTAGCATCATCTC  
JMFF035I01+           GGAGTTGATTCTTCACTCACCATCGCAGCCATTTCTGTAACTTTCCTAGCATCATCTCAT
                      ____________________________________________________________
consensus             GGAGTTGATTCTTCACTCACCATCGCAGCCATTTCTGTAACTTTCCTAGCATCATCTCAT