| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012C06 | Sequence | 602 | 006023 (5) | ref|XP_007039159.1| | 8e-85 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | 604 | 006023 (5) | ref|XP_007039159.1| | 8e-85 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi |
| JMFF034I02 | Sequence | 527 | 006023 (5) | ref|XP_007039159.1| | 3e-85 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | 608 | 006023 (5) | gb|EYU19679.1| | 9e-85 | hypothetical protein MIMGU_mgv1a015002mg [Erythranthe guttata] |
| JMFN014P02 | Sequence | 597 | 006023 (5) | ref|XP_007039159.1| | 1e-84 | Ubiquitin supergroup,Ribosomal protein L40e [Theobroma cacao] gb|EOY23660.1| Ubi | |||||
This contig is upended
. : . : . : . : . : . :
JMFF012C06+ AATTAGT
rJMFF034I02- AATTAGT
rJMFF012C06- TAATAATTAGT
____________________________________________________________
consensus TAATAATTAGT
. : . : . : . : . : . :
JMFF012C06+ GTGCCAAAATTCATTCAATCTTCAGGATAACAAAACCATAAAGCAAAAGCTGACAACAAT
rJMFF034I02- GTGCCAAAATTCATTCAATCTTCAGGATAACAAAACCATAAAGCAAAAGCTGACAACAAT
rJMFF012C06- GTGCCAAAATTCATTCAATCTTCAGGATAACAAAACCATAAAGCAAAAGCTGACAACAAT
____________________________________________________________
consensus GTGCCAAAATTCATTCAATCTTCAGGATAACAAAACCATAAAGCAAAAGCTGACAACAAT
. : . : . : . : . : . :
JMFF012C06+ AATAAATGAGCATCCTTAGTTCTATGTTTGAAGGGCTTTAAAAGCCATCCAATGTAAAGT
rJMFF034I02- AATAAATGAGCATCCTTAGTTCTATGTTTGAAGGGCTTTAAAAGCCATCCAATGTAAAGT
rJMFF012C06- AATAAATGAGCATCCTTAGTTCTATGTTTGAAGGGCTTTAAAAGCCATCCAATGTAAAGT
JMFF034I02+ CCTTAGTTCTATGTTTGAAGGGCTTTAAAAGCCATCCAATGTAAAGT
____________________________________________________________
consensus AATAAATGAGCATCCTTAGTTCTATGTTTGAAGGGCTTTAAAAGCCATCCAATGTAAAGT
. : . : . : . : . : . :
JMFF012C06+ TGAAACTTACTAAGGCTCAGAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTACTG
rJMFF034I02- TGAAACTTACTAAGGCTCAGAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTACTG
rJMFF012C06- TGAAACTTACTAAGGCTCAGAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTACTG
JMFN014P02+ AATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTACTG
JMFF034I02+ TGAAACTTACTAAGGCTCAGAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTACTG
____________________________________________________________
consensus TGAAACTTACTAAGGCTCAGAATCTACTTGATCTTCTTCTTTGGCCTCAACTGATTACTG
. : . : . : . : . : . :
JMFF012C06+ TGCCCACACTTCTTTTTACGGCAGTTTACAGCACGGGGATGCAAGCGAGCATAACACTTG
rJMFF034I02- TGCCCACACTTCTTTTTACGGCAGTTTACAGCACGGGGATGCAAGCGAGCATAACACTTG
rJMFF012C06- TGCCCACACTTCTTTTTACGGCAGTTTACAGCACGGGGATGCAAGCGAGCATAACACTTG
JMFN014P02+ TGCCCACACTTCTTTTTACGGCAGTTTACAGCACGGGGATGCAAGCGAGCATAACACTTG
JMFF034I02+ TGCCCACACTTCTTTTTACGGCAGTTTACAGCACGGGGATGCAAGCGAGCATAACACTTG
____________________________________________________________
consensus TGCCCACACTTCTTTTTACGGCAGTTTACAGCACGGGGATGCAAGCGAGCATAACACTTG
. : . : . : . : . : . :
JMFF012C06+ CGGCAGATCATCTTGTCTTGATTGTACTTCCTAGCCAATGCCATCAAAGAAGGCTCAATA
rJMFF034I02- CGGCAGATCATCTTGTCTTGATTGTACTTCCTAGCCAATGCCATCAAAGAAGGCTCAATA
rJMFF012C06- CGGCAGATCATCTTGTCTTGATTGTACTTCCTAGCCAATGCCATCAAAGAAGGCTCAATA
JMFN014P02+ CGGCAGATCATCTTGTCTTGATTGTACTTCCTAGCCAATGCCATCAAAGAAGGCTCAATA
JMFF034I02+ CGGCAGATCATCTTGTCTTGATTGTACTTCCTAGCCAATGCCATCAAAGAAGGCTCAATA
____________________________________________________________
consensus CGGCAGATCATCTTGTCTTGATTGTACTTCCTAGCCAATGCCATCAAAGAAGGCTCAATA
. : . : . : . : . : . :
JMFF012C06+ ATTCCACCACGCAGCCTCAGCACCAGATGCAGAGTGGACTCTTTCTGGATATTGTAGTCT
rJMFF034I02- ATTCCACCACGCAGCCTCAGCACCAGATGCAGAGTGGACTCTTTCTGGATATTGTAGTCT
rJMFF012C06- ATTCCACCACGCAGCCTCAGCACCAGATGCAGAGTGGACTCTTTCTGGATATTGTAGTCT
JMFN014P02+ ATTCCACCACGCAGCCTCAGCACCAGATGCAGAGTGGACTCTTTCTGGATATTGTAGTCT
JMFF034I02+ ATTCCACCACGCAGCCTCAGCACCAGATGCAGAGTGGACTCTTTCTGGATATTGTAGTCT
____________________________________________________________
consensus ATTCCACCACGCAGCCTCAGCACCAGATGCAGAGTGGACTCTTTCTGGATATTGTAGTCT
. : . : . : . : . : . :
JMFF012C06+ GCAAGAGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGT
rJMFF034I02- GCAAGAGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGT
rJMFF012C06- GCAAGAGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGT
JMFN014P02+ GCAAGAGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGT
JMFF034I02+ GCAAGAGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGT
____________________________________________________________
consensus GCAAGAGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGT
. : . : . : . : . : . :
JMFF012C06+ GGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCGCTTGACTCT
rJMFF034I02- GGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTC
rJMFF012C06- GGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCGCTTGACTCT
JMFN014P02+ GGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCGCTTGACTCT
JMFF034I02+ GGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCGCTTGACTCT
____________________________________________________________
consensus GGGATTCCTTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATCGTATCGCTTGACTCT
. : . : . : . : . : . :
JMFF012C06+ ACCTCGAGAGTGATAGTCTTCCCCGTGAGAGTTTTGACGAAGATCTGCATCTTTCCCGGC
rJMFF012C06- ACCTCGAGAGTGATAGTCTTCCCCGTGAGAGTTTTGACGAAGATCTGCATCTTTCCCGGC
JMFN014P02+ ACCTCGAGAGTGATAGTCTTCCCCGTGAGAGTTTTGACGAAGATCTGCATCTTTCCCGGC
JMFF034I02+ ACCTCGAGAGTGATAGTCTTCCCCGTGAGAGTTTTGACGAAGATCTGCATCTTTCCCGGC
____________________________________________________________
consensus ACCTCGAGAGTGATAGTCTTCCCCGTGAGAGTTTTGACGAAGATCTGCATCTTTCCCGGC
. : . : . : . : . : . :
JMFF012C06+ TCTGGCGTGCCAAACTCTGCGGCCTCCTGTCTTCTTCCGCTGTTCTGCCTCTT
rJMFF012C06- TCTGGCGTGCCAAACTCTGCGGCCTCCTGTCTTCTTCCGCTGTTCTGCCTCTT
JMFN014P02+ TCTGGCGTGCCAAAC
JMFF034I02+ TCTGGCGTGCCAAACTCTGCGGCCTCCTGTCTTCTTCCGCTGTTATGCCTCTTTCCCTTT
____________________________________________________________
consensus TCTGGCGTGCCAAACTCTGCGGCCTCCTGTCTTCTTCCGCTGTTCTGCCTCTTTCCCTTT