Contig 006020:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034A04Sequence459006020 (2)ref|XP_009771226.1|7e-39PREDICTED: zinc finger protein JACKDAW-like [Nicotiana sylvestris]742014882ref|XP_009620251.1|4e-16PREDICTED: zinc finger protein JACKDAW-like [Nicotiana tomentosiformis]
JMSF044G23Sequence727006020 (2)gb|KDO73212.1|3e-88hypothetical protein CISIN_1g011146mg [Citrus sinensis]131007520 (2)gb|KJB12227.1|6e-08hypothetical protein B456_002G007400 [Gossypium raimondii]

Alignment

This contig is upended


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JMSF044G23+                                                           CTAATGCATCGC
                      ____________________________________________________________
consensus                                                             CTAATGCATCGC
 
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JMSF044G23+           AGAATGCTCTGTGTGTGATAAAACTGTCCTTTCTGGAGAAGAGAGTTCCACAGTCACATT
                      ____________________________________________________________
consensus             AGAATGCTCTGTGTGTGATAAAACTGTCCTTTCTGGAGAAGAGAGTTCCACAGTCACATT
 
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JMSF044G23+           TATACTCTCTAGTTCCACAAATCTTGCTATGGGCTTTCCAATCAGACTGGACAGCATATT
                      ____________________________________________________________
consensus             TATACTCTCTAGTTCCACAAATCTTGCTATGGGCTTTCCAATCAGACTGGACAGCATATT
 
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JMSF044G23+           TCTTGGAACACTTATCACACTTCCACTTCTTCTCCCCATGCTTCCTGCTATAGTGTTTCT
                      ____________________________________________________________
consensus             TCTTGGAACACTTATCACACTTCCACTTCTTCTCCCCATGCTTCCTGCTATAGTGTTTCT
 
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JMSF044G23+           TGATCCCTGTGAGGTCTCCCAGAGCTCTGGAAGGGTCATGGTGGACACAGCTCTTCTCTG
                      ____________________________________________________________
consensus             TGATCCCTGTGAGGTCTCCCAGAGCTCTGGAAGGGTCATGGTGGACACAGCTCTTCTCTG
 
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JMSF044G23+           GGCATATGTACACCTTCTTCACCACTTCCTGCTTGCTTCTCTGCTTCAGCTTCCATGGCA
                      ____________________________________________________________
consensus             GGCATATGTACACCTTCTTCACCACTTCCTGCTTGCTTCTCTGCTTCAGCTTCCATGGCA
 
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JMSF044G23+           GGTTGTGCCCTCTCCTGTGGAGTTGCAGGTTCTGGTCTCTCTGGAAACCCTTGTTGCAGA
                      ____________________________________________________________
consensus             GGTTGTGCCCTCTCCTGTGGAGTTGCAGGTTCTGGTCTCTCTGGAAACCCTTGTTGCAGA
 
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JMSF044G23+           TTTCACACACGAATCGGTTCGTCGCCATCAGGGACTTTGGTGACATGGCTATCACTTCTG
                      ____________________________________________________________
consensus             TTTCACACACGAATCGGTTCGTCGCCATCAGGGACTTTGGTGACATGGCTATCACTTCTG
 
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JMSF044G23+           CATCTGGATCTGTACGTATATATAAAAACACAACTTAATTCACTTGTTTAAGCTATATAT
                      ____________________________________________________________
consensus             CATCTGGATCTGTACGTATATATAAAAACACAACTTAATTCACTTGTTTAAGCTATATAT
 
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JMSF044G23+           ATGTACTTGATGATGAGAAAAATAAGGGTTTTTAATTTGAGGCCAGGCTTGCCTGGATTT
JMFF034A04+                                                               CTGGATTT
                      ____________________________________________________________
consensus             ATGTACTTGATGATGAGAAAAATAAGGGTTTTTAATTTGAGGCCAGGCTTGCCTGGATTT
 
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JMSF044G23+           CCTGGGAGGTTTCTCTTTCTCTTGGCTGGATTTGGATTAGGGTTTGGATTGGGGTTGTTA
JMFF034A04+           CCTGGGAGGTTTCTCTTTCTCTTGGCTGGATTTGGATTAGGGTTTGGATTGGGGTTGTTA
                      ____________________________________________________________
consensus             CCTGGGAGGTTTCTCTTTCTCTTGGCTGGATTTGGATTAGGGTTTGGATTGGGGTTGTTA
 
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JMSF044G23+           GGGTTTGGATCTTGAATGAAGCCTCTAATGGAGGATGTGAGAGAAGAGAGGGCATCATCC
JMFF034A04+           GGGTTTGGATCTTGAATGAAGCCTCTAATGGAGGATGTGAGAGAAGAGAGGGCATCATCC
                      ____________________________________________________________
consensus             GGGTTTGGATCTTGAATGAAGCCTCTAATGGAGGATGTGAGAGAAGAGAGGGCATCATCC
 
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JMSF044G23+           GCCATCATTTTTACTTTTAATTTGCAGCCTAGCTAGCTAGCTTCAATTCTTCAC      
JMFF034A04+           GCCATCATTTTTACTTTTAATTTGCAGCCTAGCTAGCTAGCTTCAATTCTTCACAGAGAT
                      ____________________________________________________________
consensus             GCCATCATTTTTACTTTTAATTTGCAGCCTAGCTAGCTAGCTTCAATTCTTCACAGAGAT
 
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JMFF034A04+           AGATATGAAACAACAACAAAAGATATATAGATTTGCTGAAAACAGCTAAATCCCACAAAT
                      ____________________________________________________________
consensus             AGATATGAAACAACAACAAAAGATATATAGATTTGCTGAAAACAGCTAAATCCCACAAAT
 
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JMFF034A04+           ATATTCTCACTTCAATCTAAACACAAACATGAAACCACAACAACAACAACAACATAAGGT
                      ____________________________________________________________
consensus             ATATTCTCACTTCAATCTAAACACAAACATGAAACCACAACAACAACAACAACATAAGGT