Contig 006020:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034A04Sequence459006020 (2)ref|XP_009771226.1|7e-39PREDICTED: zinc finger protein JACKDAW-like [Nicotiana sylvestris]742014882ref|XP_009620251.1|4e-16PREDICTED: zinc finger protein JACKDAW-like [Nicotiana tomentosiformis]
JMSF044G23Sequence727006020 (2)gb|KDO73212.1|3e-88hypothetical protein CISIN_1g011146mg [Citrus sinensis]131007520 (2)gb|KJB12227.1|6e-08hypothetical protein B456_002G007400 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044G23+ CTAATGCATCGC
                      ____________________________________________________________
consensus CTAATGCATCGC
 
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JMSF044G23+ AGAATGCTCTGTGTGTGATAAAACTGTCCTTTCTGGAGAAGAGAGTTCCACAGTCACATT
                      ____________________________________________________________
consensus AGAATGCTCTGTGTGTGATAAAACTGTCCTTTCTGGAGAAGAGAGTTCCACAGTCACATT
 
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JMSF044G23+ TATACTCTCTAGTTCCACAAATCTTGCTATGGGCTTTCCAATCAGACTGGACAGCATATT
                      ____________________________________________________________
consensus TATACTCTCTAGTTCCACAAATCTTGCTATGGGCTTTCCAATCAGACTGGACAGCATATT
 
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JMSF044G23+ TCTTGGAACACTTATCACACTTCCACTTCTTCTCCCCATGCTTCCTGCTATAGTGTTTCT
                      ____________________________________________________________
consensus TCTTGGAACACTTATCACACTTCCACTTCTTCTCCCCATGCTTCCTGCTATAGTGTTTCT
 
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JMSF044G23+ TGATCCCTGTGAGGTCTCCCAGAGCTCTGGAAGGGTCATGGTGGACACAGCTCTTCTCTG
                      ____________________________________________________________
consensus TGATCCCTGTGAGGTCTCCCAGAGCTCTGGAAGGGTCATGGTGGACACAGCTCTTCTCTG
 
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JMSF044G23+ GGCATATGTACACCTTCTTCACCACTTCCTGCTTGCTTCTCTGCTTCAGCTTCCATGGCA
                      ____________________________________________________________
consensus GGCATATGTACACCTTCTTCACCACTTCCTGCTTGCTTCTCTGCTTCAGCTTCCATGGCA
 
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JMSF044G23+ GGTTGTGCCCTCTCCTGTGGAGTTGCAGGTTCTGGTCTCTCTGGAAACCCTTGTTGCAGA
                      ____________________________________________________________
consensus GGTTGTGCCCTCTCCTGTGGAGTTGCAGGTTCTGGTCTCTCTGGAAACCCTTGTTGCAGA
 
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JMSF044G23+ TTTCACACACGAATCGGTTCGTCGCCATCAGGGACTTTGGTGACATGGCTATCACTTCTG
                      ____________________________________________________________
consensus TTTCACACACGAATCGGTTCGTCGCCATCAGGGACTTTGGTGACATGGCTATCACTTCTG
 
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JMSF044G23+ CATCTGGATCTGTACGTATATATAAAAACACAACTTAATTCACTTGTTTAAGCTATATAT
                      ____________________________________________________________
consensus CATCTGGATCTGTACGTATATATAAAAACACAACTTAATTCACTTGTTTAAGCTATATAT
 
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JMSF044G23+ ATGTACTTGATGATGAGAAAAATAAGGGTTTTTAATTTGAGGCCAGGCTTGCCTGGATTT
JMFF034A04+ CTGGATTT
                      ____________________________________________________________
consensus ATGTACTTGATGATGAGAAAAATAAGGGTTTTTAATTTGAGGCCAGGCTTGCCTGGATTT
 
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JMSF044G23+ CCTGGGAGGTTTCTCTTTCTCTTGGCTGGATTTGGATTAGGGTTTGGATTGGGGTTGTTA
JMFF034A04+ CCTGGGAGGTTTCTCTTTCTCTTGGCTGGATTTGGATTAGGGTTTGGATTGGGGTTGTTA
                      ____________________________________________________________
consensus CCTGGGAGGTTTCTCTTTCTCTTGGCTGGATTTGGATTAGGGTTTGGATTGGGGTTGTTA
 
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JMSF044G23+ GGGTTTGGATCTTGAATGAAGCCTCTAATGGAGGATGTGAGAGAAGAGAGGGCATCATCC
JMFF034A04+ GGGTTTGGATCTTGAATGAAGCCTCTAATGGAGGATGTGAGAGAAGAGAGGGCATCATCC
                      ____________________________________________________________
consensus GGGTTTGGATCTTGAATGAAGCCTCTAATGGAGGATGTGAGAGAAGAGAGGGCATCATCC
 
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JMSF044G23+ GCCATCATTTTTACTTTTAATTTGCAGCCTAGCTAGCTAGCTTCAATTCTTCAC
JMFF034A04+ GCCATCATTTTTACTTTTAATTTGCAGCCTAGCTAGCTAGCTTCAATTCTTCACAGAGAT
                      ____________________________________________________________
consensus GCCATCATTTTTACTTTTAATTTGCAGCCTAGCTAGCTAGCTTCAATTCTTCACAGAGAT
 
. : . : . : . : . : . :
JMFF034A04+ AGATATGAAACAACAACAAAAGATATATAGATTTGCTGAAAACAGCTAAATCCCACAAAT
                      ____________________________________________________________
consensus AGATATGAAACAACAACAAAAGATATATAGATTTGCTGAAAACAGCTAAATCCCACAAAT
 
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JMFF034A04+ ATATTCTCACTTCAATCTAAACACAAACATGAAACCACAACAACAACAACAACATAAGGT
                      ____________________________________________________________
consensus ATATTCTCACTTCAATCTAAACACAAACATGAAACCACAACAACAACAACAACATAAGGT