Contig 006008:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020N18Sequence565006008 (8)ref|XP_006367734.1|2e-07PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]758012431 (6)gb|ACJ85808.1|1e-66unknown [Medicago truncatula]
JMFF031C03Sequence495006008 (8)615012431 (6)ref|XP_006367734.1|3e-42PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]
JMFF044J23Sequence631006008 (8)ref|XP_009629595.1|2e-27PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana tomentosiformis]616012431 (6)ref|XP_006367734.1|7e-37PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]
JMFS097D01Sequence627006008 (8)ref|XP_009629595.1|9e-30PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana tomentosiformis]
JMFS135G12Sequence595006008 (8)ref|XP_009629595.1|3e-53PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana tomentosiformis]
JMFS158G01Sequence579006008 (8)ref|XP_009629595.1|4e-21PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana tomentosiformis]
JMSF009B14Sequence243006008 (8)755012431 (6)ref|XP_006367734.1|4e-79PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]
JMSF040N15Sequence650006008 (8)ref|XP_009629595.1|6e-20PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana tomentosiformis]809012431 (6)ref|XP_006367734.1|2e-80PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFS135G12+                                                           AAAGCCTAACTC
                      ____________________________________________________________
consensus                                                             AAAGCCTAACTC
 
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JMFS135G12+           GAGACTTTCTGACACATTAAAGCATGGAACATAATTCTCAGCCTCGGGTGGACAATACTC
                      ____________________________________________________________
consensus             GAGACTTTCTGACACATTAAAGCATGGAACATAATTCTCAGCCTCGGGTGGACAATACTC
 
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JMFS135G12+           CAGATCCTTCAATTTAGAAGAACCAAGAGACAAGTGTCCAATGTCCTTCAAGTCCAACAC
JMFS097D01+                                                          TCAAGTCCAACAC
JMFF044J23+                                                                      C
                      ____________________________________________________________
consensus             CAGATCCTTCAATTTAGAAGAACCAAGAGACAAGTGTCCAATGTCCTTCAAGTCCAACAC
 
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JMFS135G12+           TACTTGTTCTTGAAGCCTACGGTACCCATGATATATTTTACCCCTGGATGAGCTCGTTAT
JMFS097D01+           TACTTGTTCTTGAAGCCTACGGTACCCATGATATATTTTACCCCTGGATGAGCTCGTTAT
JMFF044J23+           TACTTGTTCTGNAAGCCTACGGTACCCATGATATATTTTACCCCTGGATGAGCTCGTTAT
                      ____________________________________________________________
consensus             TACTTGTTCTTGAAGCCTACGGTACCCATGATATATTTTACCCCTGGATGAGCTCGTTAT
 
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JMFS135G12+           TGAGATTGTCCACCAAAAGGATCCAGTAAGAGCAAGAACTACTATGGCAACTAAGCTAAG
JMFS097D01+           TGAGATTGTCCACCAAAAGGATCCAGTAAGAGCAAGAACTACTATGGCAACTAAGCTAAG
JMFF044J23+           TGAGATTGTCCACCAAAAGGATCCAGTAAGAGCAAGAACTACTATGGCAACTAAGCTAAG
JMFS158G01+                                                                    AAG
JMSF040N15+                       CCAAAAGGATCCAGTAAGAGCAAGAACTACTATGGCAACTAAGCTAAG
                      ____________________________________________________________
consensus             TGAGATTGTCCACCAAAAGGATCCAGTAAGAGCAAGAACTACTATGGCAACTAAGCTAAG
 
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JMFS135G12+           TTTGAGCAAAAGCAATGTGAACTTAATCTGACTTCGCCCAGCTCCAGGGCTGAAGGGATT
JMFS097D01+           TTTGAGCAAAAGCAATGTGAACTTAATCTGACTTCGCCCAGCTCCAGGGCTGAAGGGATT
JMFF044J23+           TTTGAGCAAAAGCAATGTGAACTTAATCTGACTTCGCCCAGCTCCAGGGCTGAAGGGATT
JMFS158G01+           TTTGAGCAAAAGCAATGTGAACTTAATCTGACTTCGCCCAGCTCCAGGGCTGAAGGGATT
JMSF040N15+           TTTGAGCAAAAGCAATGTGAACTTAATCTGACTTCGCCCAGCTCCAGGGCTGAAGGGATT
                      ____________________________________________________________
consensus             TTTGAGCAAAAGCAATGTGAACTTAATCTGACTTCGCCCAGCTCCAGGGCTGAAGGGATT
 
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JMFS135G12+           AGATAGATAACCATTTTCACTAACACCATTCTTTGTAGGCGATTTGTCAGTGGAAAGAAT
JMFS097D01+           AGATAGATAACCATTTTCACTAACACCATTCTTTGTAGGCGATTTGTCAGTGGAAAGAAT
JMFF044J23+           AGATAGATAACCATTTTCACTAACACCATTCTTTGTAGGCGATTTGTCAGTGGAAAGAAT
JMFS158G01+           AGATAGATAACCATTTTCACTAACACCATTCTTTGTAGGCGATTTGTCAGTGGAAAGAAT
JMSF040N15+           AGATAGATAACCATTTTCACTAACACCATTCTTTGTAGGCGATTTGTCAGTGGAAAGAAT
JMFF020N18+                                              TAGGCGATTTGTCAGTGGAAAGAAT
                      ____________________________________________________________
consensus             AGATAGATAACCATTTTCACTAACACCATTCTTTGTAGGCGATTTGTCAGTGGAAAGAAT
 
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JMFS135G12+           CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
JMFS097D01+           CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
JMFF044J23+           CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
JMFS158G01+           CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
JMSF040N15+           CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
JMFF020N18+           CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
JMFF031C03+                                                        TTGACTATGATCAAA
                      ____________________________________________________________
consensus             CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
 
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JMFS135G12+           ATCTTCTTTCTCTATTTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
JMFS097D01+           ATCTTCTTTCTCTATCTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
JMFF044J23+           ATCTTCTTTCTCTATCTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
JMFS158G01+           ATCTTCTTTCTCTATCTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
JMSF040N15+           ATCTTCTTTCTCTATCTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
JMFF020N18+           ATCTTCTTTCTCTATCTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
JMFF031C03+           ATCTTCTTTCTNTATNNTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
                      ____________________________________________________________
consensus             ATCTTCTTTCTCTATCTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
 
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JMFS135G12+           TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTA                       
JMFS097D01+           TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
JMFF044J23+           TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
JMFS158G01+           TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
JMSF040N15+           TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
JMFF020N18+           TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
JMFF031C03+           TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
                      ____________________________________________________________
consensus             TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
 
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JMFS097D01+           CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTCGGCTCAG
JMFF044J23+           CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTCGGCTCAG
JMFS158G01+           CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTCGGCTCAG
JMSF009B14+                                                                GGCTCAG
JMSF040N15+           CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTCGGCTCAG
JMFF020N18+           CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTCGGCTCAG
JMFF031C03+           CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTNGGCTCAG
                      ____________________________________________________________
consensus             CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTCGGCTCAG
 
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JMFS097D01+           TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
JMFF044J23+           TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
JMFS158G01+           TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
JMSF009B14+           TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
JMSF040N15+           TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
JMFF020N18+           TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
JMFF031C03+           TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
                      ____________________________________________________________
consensus             TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
 
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JMFS097D01+           TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
JMFF044J23+           TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
JMFS158G01+           TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
JMSF009B14+           TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
JMSF040N15+           TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
JMFF020N18+           TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
JMFF031C03+           TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
                      ____________________________________________________________
consensus             TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
 
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JMFS097D01+           CTCCCTCGTTTTTC                                              
JMFF044J23+           CTCCCTCGTTTTTCCTCACTGCCTCTGCTT                              
JMFS158G01+           CTCCCTCGTTTTTCCTCACTGCCTCTGCTTATCAAATTCAGCTCGGTCGACGCGGTTTTG
JMSF009B14+           CTCCCTCGTTTTTCCTCACTGCCTCTGCTTATCAAATTCAGCTCGGTCGACGCGGTTTTG
JMSF040N15+           CTCCCTCGTTTTTCCTCACTGCCTCTGCTTATCAAATTCAGCTCGGTCGACGCGGTTTTG
JMFF020N18+           CTCCCTCGTTTTTCCTCACTGCCTCTGCTTATCAAATTCAGCTCGGTCGACGCGGTTTTG
JMFF031C03+           CTCCCTCGTTTTTCCTCACTGCCTCTGCTTATCAAATTCAGCTCGGTCGACGCGGTTTTG
                      ____________________________________________________________
consensus             CTCCCTCGTTTTTCCTCACTGCCTCTGCTTATCAAATTCAGCTCGGTCGACGCGGTTTTG
 
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JMFS158G01+           GAGTTTTTAGAGAGAGAGAGAAATGGAGAGTCCTAA                        
JMSF009B14+           GAGTTTTTAGAGAGAGAGAGAAATGGAGAGTCCTAATCACTTGAAAGCTCGCTCG     
JMSF040N15+           GAGTTTTTAGAGAGAGAGAGAAATGGAGAGTCCTAATCACTTGAAAGCTCGCTCG     
JMFF020N18+           GAGTTTTTAGAGAGAGAGAGAAATGGAGAGTCCTAATCACTTGAAAGCTCGCTCGTGAAA
JMFF031C03+           GAGTTTTTAGAGAGAGAGAGAAATGGAGAGTCCTAATCACTTGAAAGCTCGCTCGTGAAA
                      ____________________________________________________________
consensus             GAGTTTTTAGAGAGAGAGAGAAATGGAGAGTCCTAATCACTTGAAAGCTCGCTCGTGAAA
 
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JMFF020N18+           GACTTGAATCTGCCCCCTCGTCGGATTCATATACGTGACACCTTCTACGTACTAAAATCC
JMFF031C03+           GACTTGAATCTGCCCCCTCGTCGGATTCATATACGTGACACCTTCTACGTACTAAAATCC
                      ____________________________________________________________
consensus             GACTTGAATCTGCCCCCTCGTCGGATTCATATACGTGACACCTTCTACGTACTAAAATCC