| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001L13 | Sequence | 536 | 006007 (14) | ref|XP_009789164.1| | 9e-107 | PREDICTED: 60S ribosomal protein L13a-1 [Nicotiana sylvestris] | 664 | 006007 (14) | emb|CDP03876.1| | 6e-115 | unnamed protein product [Coffea canephora] |
| JMFF031B18 | Sequence | 553 | 006007 (14) | ref|XP_009622553.1| | 1e-110 | PREDICTED: 60S ribosomal protein L13a-4-like [Nicotiana tomentosiformis] | 688 | 006007 (14) | ref|XP_009622553.1| | 2e-129 | PREDICTED: 60S ribosomal protein L13a-4-like [Nicotiana tomentosiformis] |
| JMFF034H09 | Sequence | 533 | 006007 (14) | ref|XP_009789164.1| | 3e-107 | PREDICTED: 60S ribosomal protein L13a-1 [Nicotiana sylvestris] | 626 | 006007 (14) | emb|CDP03876.1| | 5e-98 | unnamed protein product [Coffea canephora] |
| JMFN005I11 | Sequence | 593 | 006007 (14) | ref|XP_009622553.1| | 5e-123 | PREDICTED: 60S ribosomal protein L13a-4-like [Nicotiana tomentosiformis] | |||||
| JMSF005E17 | Sequence | 427 | 002104 (5) | ref|XP_006344418.1| | 132 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] | 152 | 006007 (14) | |||
| JMSF005G19 | Sequence | 201 | 006007 (14) | ||||||||
| JMSF016B15 | Sequence | 340 | 006007 (14) | ref|XP_008793237.1| | 2e-58 | PREDICTED: 60S ribosomal protein L13a-4 [Phoenix dactylifera] | 792 | 006007 (14) | emb|CDP03876.1| | 6e-136 | unnamed protein product [Coffea canephora] |
| JMSF038G08 | Sequence | 624 | 006007 (14) | ref|XP_009622553.1| | 2e-125 | PREDICTED: 60S ribosomal protein L13a-4-like [Nicotiana tomentosiformis] | 779 | 006007 (14) | emb|CDP03876.1| | 5e-136 | unnamed protein product [Coffea canephora] |
| JMSF046H18 | Sequence | 228 | 006007 (14) | ref|XP_008793237.1| | 1e-25 | PREDICTED: 60S ribosomal protein L13a-4 [Phoenix dactylifera] | |||||
This contig is upended
. : . : . : . : . : . :
JMSF005G19+ TTTTTTTTTTAACAGCTTCAAGCAAATAATTTGTCACATGTAACACAAAAATTGTACC
rJMFF001L13- GTAACACAAAAATTGTACC
rJMSF016B15- GTAACACAAAAATTGTACC
rJMSF038G08- C
____________________________________________________________
consensus TTTTTTTTTTAACAGCTTCAAGCAAATAATTTGTCACATGTAACACAAAAATTGTACC
. : . : . : . : . : . :
JMSF005G19+ ACAGCCACAAGAAAATGTTCCACTCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
rJMSF005E17- TCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
rJMFF031B18- GCCACAAGAAAATGTTCCACTCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
rJMFF001L13- ACAGCCACAAGAAAATGTTCCACTCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
rJMSF016B15- ACAGCCACAAGAAAATGTTCCACTCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
rJMSF038G08- ACAGCCACAAGAAAATGTTCCACTCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
____________________________________________________________
consensus ACAGCCACAAGAAAATGTTCCACTCAATACCATTGTCTCTGAAATTCCAAGGCTACTTAA
. : . : . : . : . : . :
JMSF005G19+ TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
rJMFF034H09- GATG
rJMSF005E17- TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
rJMFF031B18- TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
rJMFF001L13- TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
rJMSF016B15- TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
rJMSF038G08- TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
____________________________________________________________
consensus TACTATATTTAAGATTTAGGATCTACTAACTCAATTTAGTACTTCACTGAGGATAAGATG
. : . : . : . : . : . :
JMSF005G19+ TCAAGTTGGGTACCCAGTCTC
rJMFF034H09- TCAAGTTGGGTACCCAGTCTCTCCTCTGCAGCCTTCTCAGCTTTGACCCTAAGCTTTGTC
rJMSF005E17- TCAAGTTGGGTACCCAGTCTC
rJMFF031B18- TCAAGTTGGGTACCCAGTCTCTCCTCTGCAGCCTTCTCAGCTTTGACCCTAAGCTTTGTC
rJMFF001L13- TCAAGTTGGGTACCCAGTCTCTCCTCTGCAGCCTTCTCAGCTTTGACCCTAAGCTTTGTC
rJMSF016B15- TCAAGTTGGGTACCCAGTCTCTCCTCTGCAGCCTTCTCAGCTTTGACCCTAAGCTTTGTC
JMSF038G08+ TCTCAGCTTTGACCNTAAGCTTTGTC
JMFN005I11+ AAGCTTTGTC
rJMSF038G08- TCAAGTTGGGTACCCAGTCTCTCCTCTGCAGCCTTCTCAGCTTTGACCCTAAGCTTTGTC
____________________________________________________________
consensus TCAAGTTGGGTACCCAGTCTCTCCTCTGCAGCCTTCTCAGCTTTGACCCTAAGCTTTGTC
. : . : . : . : . : . :
rJMFF034H09- AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
rJMFF031B18- AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
rJMFF001L13- AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
rJMSF016B15- AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
JMSF038G08+ AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
JMFN005I11+ AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
rJMSF038G08- AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
JMFF031B18+ ATTCTCTAGAACC
____________________________________________________________
consensus AACTGCTTCCTCCTCTCGTATGCAGCTTGGGCCCTCTCCTTCCTCTTATTCTCTAGAACC
. : . : . : . : . : . :
rJMFF034H09- TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
rJMFF031B18- TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
rJMFF001L13- TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
rJMSF016B15- TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
JMSF038G08+ TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
JMFN005I11+ TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
rJMSF038G08- TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
JMFF001L13+ GATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
JMFF034H09+ GGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
JMFF031B18+ TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
____________________________________________________________
consensus TTGATGGTATCATAGTGGTTCCAGCCAACCTCAGATGAAAGCTTACCCAGCAGGCAGTAC
. : . : . : . : . : . :
rJMFF034H09- TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
rJMFF031B18- TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
rJMFF001L13- TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
rJMSF016B15- TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
JMSF038G08+ TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
JMFN005I11+ TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
rJMSF038G08- TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
JMFF001L13+ TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
JMFF034H09+ TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
JMFF031B18+ TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
____________________________________________________________
consensus TTGTGCCCAGCCTGGAGCCTCAATACCTTGAGGGCATCAGGAATAACCATCCGCTTCACC
. : . : . : . : . : . :
rJMFF034H09- TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
rJMFF031B18- TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
rJMFF001L13- TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
rJMSF016B15- TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
JMSF038G08+ TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
JMFN005I11+ TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
rJMSF038G08- TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
JMFF001L13+ TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
JMFF034H09+ TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
JMFF031B18+ TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
____________________________________________________________
consensus TTATCATACGGCGGAGGAACACCCTCGTACACCTTCAATCGAGCCAGCGCCGCAGCTCCT
. : . : . : . : . : . :
rJMFF034H09- CTCTTCGTCTTATGCGGAACCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
rJMFF031B18- CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
rJMFF001L13- CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
rJMSF016B15- CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
JMSF038G08+ CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
JMFN005I11+ CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
JMSF016B15+ GCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
rJMSF038G08- CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
JMFF001L13+ CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
JMFF034H09+ CTCTTCGTCTTATGCGGAACCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
JMFF031B18+ CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
____________________________________________________________
consensus CTCTTCGTCTTATGCGGAATCATTCCTCGGATGGTGCGCCAGAGGATCTTAGACGGTGCG
. : . : . : . : . : . :
rJMFF034H09- CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
rJMFF031B18- CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
rJMFF001L13- CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
rJMSF016B15- CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
JMSF038G08+ CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
JMFN005I11+ CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
JMSF016B15+ CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
rJMSF038G08- CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
JMFF001L13+ CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
JMFF034H09+ CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
JMFF031B18+ CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
____________________________________________________________
consensus CGGAAGTGGATGGGGCCGTGGGAGGGCTTGGTGTTCATGCGCTTGCGGAGGAAGCGGTGA
. : . : . : . : . : . :
rJMFF034H09- TACTTCATTTTCTGACGGACAAGG
rJMFF031B18- TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
rJMFF001L13- TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
rJMSF016B15- TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMSF038G08+ TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMFN005I11+ TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMSF016B15+ TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
rJMSF038G08- TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMFF001L13+ TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMFF034H09+ TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMSF046H18+ TGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
JMFF031B18+ TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
____________________________________________________________
consensus TACTTCATTTTCTGACGGACAAGGCCGCCGGAGAGGCAGATTTCCTCGCAGCGGACAACA
. : . : . : . : . : . :
rJMFF031B18- ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
rJMFF001L13- ACCACTCGCTGACCATTGAGCAGCTCCTTG
rJMSF016B15- ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
JMSF038G08+ ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
JMFN005I11+ ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
JMSF016B15+ ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
rJMSF038G08- ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
JMFF001L13+ ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
JMFF034H09+ ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
JMSF046H18+ ACCACTCGCTGACCATTGAGCAGCTCNTTGGCCAAGANGGAGGCCAGCCGTCCCAACATA
JMFF031B18+ ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
____________________________________________________________
consensus ACCACTCGCTGACCATTGAGCAGCTCCTTGGCCAAGATGGAGGCCAGCCGTCCCAACATA
. : . : . : . : . : . :
rJMFF031B18- TGATGCCTCGCGTCCACCACCACTCTACGAG
rJMSF016B15- TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
JMSF038G08+ TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
JMFN005I11+ TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
JMSF016B15+ TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
rJMSF038G08- TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
JMFF001L13+ TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCGAGATCCCGACACCATTTTT
JMFF034H09+ TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
JMSF046H18+ TGATGCCTNGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTAT
JMFF031B18+ TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
____________________________________________________________
consensus TGATGCCTCGCGTCCACCACCACTCTACGAGCGCAGATTCCAGATCCCGACACCATTTTT
. : . : . : . : . : . :
rJMSF016B15- GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGA
JMSF038G08+ GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTCTGCTCT
JMFN005I11+ GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAG
JMSF016B15+ GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTC
rJMSF038G08- GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTCTGCTCT
JMFF001L13+ GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTCTGCTCT
JMFF034H09+ GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTCTGCTCT
JMSF046H18+ GCTGCGTCTTCTCTTCACTCCCTTCNTATCCGGNGATGACTAGCTTAGCTCTGCTC
JMFF031B18+ GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTCTGCTCTAGC
____________________________________________________________
consensus GCTGCGTCTTCTCTTCACTCCCTTCCTATCCGGCGATGACTAGCTTAGCTCTGCTCTAGC