| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015E09 | Sequence | 539 | 006004 (8) | ref|XP_009622550.1| | 3e-36 | PREDICTED: protein PXR1 [Nicotiana tomentosiformis] | 713 | 006004 (8) | ref|XP_009796003.1| | 1e-39 | PREDICTED: protein PXR1 [Nicotiana sylvestris] |
| JMFF030K24 | Sequence | 536 | 006004 (8) | ref|XP_009622550.1| | 1e-31 | PREDICTED: protein PXR1 [Nicotiana tomentosiformis] | 662 | 006004 (8) | ref|XP_009796003.1| | 1e-36 | PREDICTED: protein PXR1 [Nicotiana sylvestris] |
| JMFN008P11 | Sequence | 611 | 006004 (8) | ref|XP_009796003.1| | 3e-44 | PREDICTED: protein PXR1 [Nicotiana sylvestris] | |||||
| JMSF024A06 | Sequence | 662 | 006004 (8) | ref|XP_009796003.1| | 2e-44 | PREDICTED: protein PXR1 [Nicotiana sylvestris] | 722 | 006004 (8) | ref|XP_009796003.1| | 4e-44 | PREDICTED: protein PXR1 [Nicotiana sylvestris] |
| JMSF024A07 | Sequence | 609 | 006004 (8) | ref|XP_009796003.1| | 1e-38 | PREDICTED: protein PXR1 [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF030K24- ATCTTTATTATCTTCAACTTTGATCAAAACTACATTTGATAAGAAAAATAAAC
rJMFF015E09- ACTTTGATCAAAACTACATTTGATAAGAAAAATAAAC
____________________________________________________________
consensus ATCTTTATTATCTTCAACTTTGATCAAAACTACATTTGATAAGAAAAATAAAC
. : . : . : . : . : . :
rJMFF030K24- AAGAATACCAAAACTGCATTGTATGTTTGGAATTTTAAAACACTAAAACATAGCAGTTCT
rJMSF024A07- AGTTCT
rJMFF015E09- AAGAATACCAAAACTGCATTGTATGTTTGGAATTTTAAAACACTAAAACATAGCAGTTCT
rJMSF024A06- AAACACTAAAACATAGCAGTTCT
____________________________________________________________
consensus AAGAATACCAAAACTGCATTGTATGTTTGGAATTTTAAAACACTAAAACATAGCAGTTCT
. : . : . : . : . : . :
rJMFF030K24- GGTTCTGTAGCACCAATAGGCCAACTACTCTTTAAGTTGATGAAATAAACAACCGATTAT
rJMSF024A07- GGTTCTGTAGCACCAATAGGCCAACTACTCTTTAAGTTGATGAAATAAACAACCGATTAT
rJMFF015E09- GGTTCTGTAGCACCAATAGGCCAACTACTCTTTAAGTTGATGAAATAAACAACCGATTAT
rJMSF024A06- GGTTCTGTAGCACCAATAGGCCAACTACTCTTTAAGTTGATGAAATAAACAACCGATTAT
JMSF024A06+ TTTAAGTTGATGAAATAAACAACCGATTAT
____________________________________________________________
consensus GGTTCTGTAGCACCAATAGGCCAACTACTCTTTAAGTTGATGAAATAAACAACCGATTAT
. : . : . : . : . : . :
rJMFF030K24- AAAAAGATTCAGAGGGGAGTGGGTTTACAGGAGGCATCAAGTAACTTGGCCTCCAGGTCC
rJMSF024A07- AAAAAGATTCAGAGGGGAGTGGGTTTACAGGAGGCATCAAGTAACTTGGCCTCCAGGTCC
rJMFF015E09- AAAAAGATTCAGAGGGGAGTGGGTTTACAGGAGGCATCAAGTAACTTGGCCTCCAGGTCC
JMFN008P11+ AAGATTCAGAGGGGAGTGGGTTTACAGGAGGCATCAAGTAACTTGGCCTCCAGGTCC
rJMSF024A06- AAAAAGATTCAGAGGGGAGTGGGTTTACAGGAGGCATCAAGTAACTTGGCCTCCAGGTCC
JMSF024A06+ AAAAAGATTCAGAGGGGAGTGGGTTTACAGGAGGCATCAAGTAACTTGGCCTCCAGGTCC
____________________________________________________________
consensus AAAAAGATTCAGAGGGGAGTGGGTTTACAGGAGGCATCAAGTAACTTGGCCTCCAGGTCC
. : . : . : . : . : . :
rJMFF030K24- TCCTCATCAATCCACAACGAACTTTTTCGACGCAAAAGCTCATTCCCCTTTGTCTTCTTT
rJMSF024A07- TCCTCATCAATCCACAACGAACTTTTTCGACGCAAAAGCTCATTCCCCTTTGTCTTCTTT
rJMFF015E09- TCCTCATCAATCCACAACGAACTTTTTCGACGCAAAAGCTCATTCCCCTTTGTCTTCTTT
JMFN008P11+ TCCTCATCAATCCACAACGAACTTTTTCGACGCAAAAGCTCATTCCCCTTTGTCTTCTTT
rJMSF024A06- TCCTCATCAATCCACAACGAACTTTTTCGACGCAAAAGCTCATTCCCCTTTGTCTTCTTT
JMFF015E09+ CACAACGAACTTTTTCGACGCAAAAGCTCATTCCCCTTTGTCTTCTTT
JMSF024A06+ TCCTCATCAATCCACAACGAACTTTTTCGACGCAAAAGCTCATTCCCCTTTGTCTTCTTT
____________________________________________________________
consensus TCCTCATCAATCCACAACGAACTTTTTCGACGCAAAAGCTCATTCCCCTTTGTCTTCTTT
. : . : . : . : . : . :
rJMFF030K24- TCTTTAATTTTAGTTTCTCTCATCCTCCAGTATTCAAGCTTCTCTTGTCTTTCTTTTAGG
rJMSF024A07- TCTTTAATTTTAGTTTCTCTCATCCTCCAGTATTCAAGCTTCTCTTGTCTTTCTTTTAGG
rJMFF015E09- TCTTTAATTTTAGTTTCTCTCATCCTCCAGTATTCAAGCTTCTCTTGTCTTTCTTTTAGG
JMFN008P11+ TCTTTAATTTTAGTTTCTCTCATCCTCCAGTATTCAAGCTTCTCTTGTCTTTCTTTTAGG
rJMSF024A06- TCTTTAATTTTAGTTTCTCTCATCCTCCAGTATTCAAGCTTCTCTTGTCTTTCTTTTAGG
JMFF015E09+ TCTTTAATTTTAGTTTCTCTCATCCTCCAGTATTCAAGCTTCTCTTGTCTTTCTTTTAGG
JMSF024A06+ TCTTTAATTTTAGTTTCTCTCATCCTCCAGTATTCAAGCTTCTCTTGTCTTTCTTTTAGG
JMFF030K24+ TAATTTTAGTTTCTCTCATCCTCCAGTATTCAAGCTTCTCTTGTCTTTCTTTTAGG
____________________________________________________________
consensus TCTTTAATTTTAGTTTCTCTCATCCTCCAGTATTCAAGCTTCTCTTGTCTTTCTTTTAGG
. : . : . : . : . : . :
rJMFF030K24- AGAGTTCGGCGGAATTCCTCTTCAAAGATGGCTATCTCTTCAGCCTTGGCCTTCTTCTCA
rJMSF024A07- AGAGTTCGGCGGAATTCCTCTTCAAAGATGGCTATCTCTTCAGCCTTGGCCTTCTTCTCA
rJMFF015E09- AGAGTTCGGCGGAATTCCTCTTCAAAGATGGCTATCTCTTCAGCCTTGGCCTTCTTCTCA
JMFN008P11+ AGAGTTCGGCGGAATTCCTCTTCAAAGATGGCTATCTCTTCAGCCTTGGCCTTCTTCTCA
rJMSF024A06- AGAGTTCGGCGGAATTCCTCTTCAAAGATGGCTATCTCTTCAGCCTTGGCCTTCTTCTCA
JMFF015E09+ AGAGTTCGGCGGAATTCCTCTTCAAAGATGGCTATCTCTTCAGCCTTGGCCTTCTTCTCA
JMSF024A06+ AGAGTTCGGCGGAATTCCTCTTCAAAGATGGCTATCTCTTCAGCCTTGGCCTTCTTCTCA
JMFF030K24+ AGAGTTCGGCGGAATTCCTCTTCAAAGATGGCTATCTCTTCAGCCTTGGCCTTCTTCTCA
____________________________________________________________
consensus AGAGTTCGGCGGAATTCCTCTTCAAAGATGGCTATCTCTTCAGCCTTGGCCTTCTTCTCA
. : . : . : . : . : . :
rJMFF030K24- GCGGCTTTAGCAGCCTTCCGCTCCTCATTTGCGATCCTCAAAGCTTCCTTCTTGGCCTCG
rJMSF024A07- GCGGCTTTAGCAGCCTTCCGCTCCTCATTTGCGATCCTCAAAGCTTCCTTCTTGGCCTCG
rJMFF015E09- GCGGCTTTAGCAGCCTTCCGCTCCTCATTTGCGATCCTCAAAGCTTCCTTCTTGGCCTCG
JMFN008P11+ GCGGCTTTAGCAGCCTTCCGCTCCTCATTTGCGATCCTCAAAGCTTCCTTCTTGGCCTCG
rJMSF024A06- GCGGCTTTAGCAGCCTTCCGCTCCTCATTTGCGATCCTCAAAGCTTCCTTCTTGGCCTCG
JMFF015E09+ GCGGCTTTAGCAGCCTTCCGCTCCTCATTTGCGATCCTCAAAGCTTCCTTCTTGGCCTCG
JMSF024A06+ GCGGCTTTAGCAGCCTTCCGCTCCTCATTTGCGATCCTCAAAGCTTCCTTCTTGGCCTCG
JMFF030K24+ GCGGCTTTAGCAGCCTTCCGCTCCTCATTTGCGATCCTCAAAGCTTCCTTCTTGGCCTCG
____________________________________________________________
consensus GCGGCTTTAGCAGCCTTCCGCTCCTCATTTGCGATCCTCAAAGCTTCCTTCTTGGCCTCG
. : . : . : . : . : . :
rJMFF030K24- GCTTTTCTCAGCTTTTCGAGCCGCAGGACCTCCATCTCCTTGATGTAATCCTTGCGGACC
rJMSF024A07- GCTTTTCTCAGCTTTTCGAGCCGCAGGACCTCCATCTCCTTGATGTAATCCTTGCGGACC
rJMFF015E09- GCTTTTCTCAGCTTTTCGAGCCGCAGGACCTCCATCTCCTTGATGTAATCCTTGCGGACC
JMFN008P11+ GCTTTTCTCAGCTTTTCGAGCCGCAGGACCTCCATCTCCTTGATGTAATCCTTGCGGACC
rJMSF024A06- GCTTTTCTCAGCTTTTCGAGCCGCAGGACCTCCATCTCCTTGATGTAATCCTTGCGGACC
JMFF015E09+ GCTTTTCTCAGCTTTTCGAGCCGCAGGACCTCCATCTCCTTGATGTAATCCTTGCGGACC
JMSF024A06+ GCTTTTCTCAGCTTTTCGAGCCGCAGGACCTCCATCTCCTTGATGTAATCCTTGCGGACC
JMFF030K24+ GCTTTTCTCAGCTTTTCGAGCCGCAGGACCTCCATCTCCTTGATGTAATCCTTGCGGACC
____________________________________________________________
consensus GCTTTTCTCAGCTTTTCGAGCCGCAGGACCTCCATCTCCTTGATGTAATCCTTGCGGACC
. : . : . : . : . : . :
rJMFF030K24- ACCTTGACCTTCTTGGCATACTCGCGGCGGAGAAGCGCGAGCTGGGCTTCCGCCTCCTTG
rJMSF024A07- ACCTTGACCTTCTTGGCATACTCGCGGCGGAGAAGCGCGAGCTGGGCTTCCGCCTCCTTG
rJMFF015E09- ACCTTGACCTTCTTGGCATACTCGCGGCGGAGAAGCGCGAGCTGGGCTTCCGCCTCCTTG
JMFN008P11+ ACCTTGACCTTCTTGGCATACTCGCGGCGGAGAAGCGCGAGCTGGGCTTCCGCCTCCTTG
rJMSF024A06- ACCTTGACCTTCTTGGCATACTCGCGGCGGAGAAGCGCGAGCTGGGCTTCCGCCTCCTTG
JMFF015E09+ ACCTTGACCTTCTTGGCATACTCGCGGCGGAGAAGCGCGAGCTGGGCTTCCGCCTCCTTG
JMSF024A06+ ACCTTGACCTTCTTGGCATACTCGCGGCGGAGAAGCGCGAGCTGGGCTTCCGCCTCCTTG
JMFF030K24+ ACCTTGACCTTCTTGGCATACTCGCGGCGGAGAAGCGCGAGCTGGGCTTCCGCCTCCTTG
____________________________________________________________
consensus ACCTTGACCTTCTTGGCATACTCGCGGCGGAGAAGCGCGAGCTGGGCTTCCGCCTCCTTG
. : . : . : . : . : . :
rJMFF030K24- GGATCCCTCGGGGGCTTCCACGAGTTCAGGTACTCGCTCGGCGCCAGGAATTTGTGGCTC
rJMSF024A07- GGATCCCTCGGGGGCTTCCACGAGTTCAGGTACTCGCTCGGCGCCAGGAATTTGTGGCTC
rJMFF015E09- GGATCCCTCGGGGGCTTCCACGAGTTCAGGTACTCGCTCGGCGCCAGGAATTTGTGGCTC
JMFN008P11+ GGATCCCTCGGGGGCTTCCACGAGTTCAGGTACTCGCTCGGCGCCAGGAATTTGTGGCTC
rJMSF024A06- GGATCCCTCGGGGGCTTCCACGAGTTCAGGTACTCGCTCGGCGCCAGGAATTTGTGGCTC
JMFF015E09+ GGATCCCTCGGGGGCTTCCACGAGTTCAGGTACTCGCTCGGCGCCAGGAATTTGTGGCTC
JMSF024A06+ GGATCCCTCGGGGGCTTCCACGAGTTCAGGTACTCGCTCGGCGCCAGGAATTTGTGGCTC
JMFF030K24+ GGATCCCTCGGGGGCTTCCACGAGTTCAGGTACTCGCTCGGCGCCAGGAATTTGTGGCTC
____________________________________________________________
consensus GGATCCCTCGGGGGCTTCCACGAGTTCAGGTACTCGCTCGGCGCCAGGAATTTGTGGCTC
. : . : . : . : . : . :
rJMFF030K24- TGCTGGTGG
rJMSF024A07- TGCTGGTGGAGATTCTTCTCCAACGCCGCCTGGGTTTCGGNGGTGGCGG
rJMFF015E09- TGCTGGTGGAGATTCTTCTCCAACGCCGCCTGGGTTTCGGCGGTGGCGGAAAGCGATCGG
JMFN008P11+ TGCTGGTGGAGATTCTTCTCCAACGCCGCCTGGGTTTCGGCGGTGGCGGAAAGCGATCGG
rJMSF024A06- TGCTGGTGGAGATTCTTCTCCAACGCCGCCTGGGTTTCGGCGGTGGCGGAAAGCGATCGG
JMFF015E09+ TGCTGGTGGAGATTCTTCTCCAACGCCGCCTGGGTTTCGGCGGTGGCGGAAAGCGATCGG
JMSF024A06+ TGCTGGTGGAGATTCTTCTCCAACGCCGCCTGGGTTTCGGCGGTGGCGGAAAGCGATCGG
JMFF030K24+ TGCTGGTGGAGATTCTTCTCCAACGCCGCCTGGGTTTCGGCGGTGGCGGAAAGCGATCGG
____________________________________________________________
consensus TGCTGGTGGAGATTCTTCTCCAACGCCGCCTGGGTTTCGGCGGTGGCGGAAAGCGATCGG
. : . : . : . : . : . :
rJMFF015E09- AGATGGTGGAGCTTTA
JMFN008P11+ AGATGGTGGAGCTTTAGGGCTTGGGTGGAAATGGGGTTCCGAAGAAGATACCGGGAGAGC
rJMSF024A06- AGATGGTGGAGCTTTAGGGCTTGGGTGGAAATGGGGTTCCGAAGAAGATGCCGGGAGAGC
JMFF015E09+ AGATGGTGGAGCTTTAGGGCTTGGGTGGAAATGGGGTTCCGAAGAAGATGCCGGGAGAGC
JMSF024A06+ AGATGGTGGAGCTTTAGGGCTTGGGTGGAAATGGGGTTCCGAAGAAGATGCCGGGAGAGC
JMFF030K24+ AGATGGTGGAGCTTTAGGGTTTGGGTGGAAATGGGGTTCCGAAGAAGATGCCGGGAGAGC
____________________________________________________________
consensus AGATGGTGGAGCTTTAGGGCTTGGGTGGAAATGGGGTTCCGAAGAAGATGCCGGGAGAGC
. : . : . : . : . : . :
JMFN008P11+ GACATTTGGTTGAA
rJMSF024A06- GACATTTGGTTGAAAGGTAATGCCGCTGCTC
JMFF015E09+ GACATTTGGTT
JMSF024A06+ GACATTTGGTTGAAAGGTAATGCCGCTGCTC
JMFF030K24+ GACATTTGGTTGAAAGGTAATGCCGCTGCTCAGATCGATAAAACCCTAGCGAGCAGAGAT
____________________________________________________________
consensus GACATTTGGTTGAAAGGTAATGCCGCTGCTCAGATCGATAAAACCCTAGCGAGCAGAGAT