Contig 005990:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027J11Sequence501005990 (2)ref|XP_010510475.1|3e-96PREDICTED: tubulin beta-7 chain isoform X1 [Camelina sativa] ref|XP_010510476.1|736005436 (2)ref|XP_010550770.1|5e-143PREDICTED: tubulin beta-8 chain-like [Tarenaya hassleriana]
JMFF040G24Sequence533005990 (2)gb|KHG25436.1|4e-93Tubulin beta-8 chain -like protein [Gossypium arboreum]692005436 (2)emb|CAN76383.1|2e-135hypothetical protein VITISV_015843 [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF040G24+ TTGAAATCAGAAGGGTCCCCATTCCGGATCCAGTTCCTCCACCCAACGAATGG
                      ____________________________________________________________
consensus TTGAAATCAGAAGGGTCCCCATTCCGGATCCAGTTCCTCCACCCAACGAATGG
 
. : . : . : . : . : . :
JMFF040G24+ CAGACCTGAAACCCTTGCAGACAATCGCAATTTTCCGCTTCCTTGCGAACAACATCCAGA
JMFF027J11+ AACCCTTGCAGACAATCGCAATTTTCCGCTTCCTTGCGAACAACATCCAGA
                      ____________________________________________________________
consensus CAGACCTGAAACCCTTGCAGACAATCGCAATTTTCCGCTTCCTTGCGAACAACATCCAGA
 
. : . : . : . : . : . :
JMFF040G24+ ACGGAATCAATCAGCTCAGCTCCCTCCGTGTAATGCCCCTTAGCCCAGTTGTTACCGGCG
JMFF027J11+ ACGGAATCAATCAGCTCAGCTCCCTCCGTGTAATGCCCCTTAGCCCAGTTGTTACCGGCG
                      ____________________________________________________________
consensus ACGGAATCAATCAGCTCAGCTCCCTCCGTGTAATGCCCCTTAGCCCAGTTGTTACCGGCG
 
. : . : . : . : . : . :
JMFF040G24+ CCGTTCTGTCCGAACACGAAGTTATCGGGCCGGAAAATCTGGCCGTAGGGCCCAGATCTC
JMFF027J11+ CCGTTCTGTCCGAACACGAAGTTATCGGGCCGGAAAATCTGGCCGTAGGGCCCAGATCTC
                      ____________________________________________________________
consensus CCGTTCTGTCCGAACACGAAGTTATCGGGCCGGAAAATCTGGCCGTAGGGCCCAGATCTC
 
. : . : . : . : . : . :
JMFF040G24+ ACGCTGTCCATGGTACCCGGTTCCAGATCCATGAGAACAGCCCGAGGCACATACCGCCCA
JMFF027J11+ ACGCTGTCCATGGTACCCGGTTCCAGATCCATGAGAACAGCCCGAGGCACATACCGCCCA
                      ____________________________________________________________
consensus ACGCTGTCCATGGTACCCGGTTCCAGATCCATGAGAACAGCCCGAGGCACATACCGCCCA
 
. : . : . : . : . : . :
JMFF040G24+ CAGCTAGCCTCGTTGTAATACACATTGACGCGCTCCAGTTGCAGATCCGAATCCCCGTCG
JMFF027J11+ CAGCTAGCCTCGTTGTAATACACATTGACGCGCTCCAGTTGCAGATCCGAATCCCCGTCG
                      ____________________________________________________________
consensus CAGCTAGCCTCGTTGTAATACACATTGACGCGCTCCAGTTGCAGATCCGAATCCCCGTCG
 
. : . : . : . : . : . :
JMFF040G24+ AAGCGTCCGGTGGCGTCGATGCCGTGCTCCGCGCACACCACCTCCCAGAACTTGGACCCG
JMFF027J11+ AAGCGTCCGGTGGCGTCGATGCCGTGCTCCGCGCACACCACCTCCCAGAACTTGGACCCG
                      ____________________________________________________________
consensus AAGCGTCCGGTGGCGTCGATGCCGTGCTCCGCGCACACCACCTCCCAGAACTTGGACCCG
 
. : . : . : . : . : . :
JMFF040G24+ ATCTGGTTGCCGCATTGGCCACCTTGAATGTGAAGAATCTCACGCAT
JMFF027J11+ ATCTGGTTGCCGCATTGGCCACCTTGAATGTGAAGAATCTCACGCATTTTCAGAGGAAGA
                      ____________________________________________________________
consensus ATCTGGTTGCCGCATTGGCCACCTTGAATGTGAAGAATCTCACGCATTTTCAGAGGAAGA
 
. : . : . : . : . : . :
JMFF027J11+ AAAAGGGAACGAGAGATTCTTCGAGAGAGATGGAGGGGCGAAAATGGAGAGCTGTCCGGG
                      ____________________________________________________________
consensus AAAAGGGAACGAGAGATTCTTCGAGAGAGATGGAGGGGCGAAAATGGAGAGCTGTCCGGG