clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF016D18 | Sequence | 359 | 005989 (4) | ref|XP_009623871.1| | 2e-28 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like | 628 | 006826 (4) | ref|XP_009351030.1| | 3e-30 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like |
JMFF020E04 | Sequence | 408 | 005989 (4) | ref|XP_009623871.1| | 3e-28 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like | 639 | 006826 (4) | ref|XP_008386160.1| | 2e-43 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like |
JMFF023A01 | Sequence | 337 | 005989 (4) | ref|XP_009623871.1| | 5e-12 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like | 507 | 006826 (4) | gb|KDO74061.1| | 3e-16 | hypothetical protein CISIN_1g0225552mg, partial [Citrus sinensis] |
JMFF027I17 | Sequence | 530 | 005989 (4) | ref|XP_004248267.1| | 5e-60 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial [Sola | 664 | 006826 (4) | ref|XP_009628354.1| | 1e-50 | PREDICTED: 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial-like, |
This contig is upended
. : . : . : . : . : . :
JMFF027I17+ AACAACAATGTCATACTTCTTCTCGAGCTTTTGAAGAGCCTCATTACATC
____________________________________________________________
consensus AACAACAATGTCATACTTCTTCTCGAGCTTTTGAAGAGCCTCATTACATC
. : . : . : . : . : . :
JMFF027I17+ GCTCAGTTCCATTTCTACATGATTCAGAAGTCATAATGACTTCAGCACCAAATCCCCTAC
____________________________________________________________
consensus GCTCAGTTCCATTTCTACATGATTCAGAAGTCATAATGACTTCAGCACCAAATCCCCTAC
. : . : . : . : . : . :
JMFF020E04+ TCTTTTCATCATCCGTCGCCACAACAACTTGATCCAATGCCCTAGNTA
JMFF016D18+ ACATTCAGCAATCTTTTCATCATCCGTCGCCACAACAACTTGATCCAATGCCCTAGCTA
JMFF027I17+ AACATTCAGCAATCTTTTCATCATCCGTCGCCACAACAACTTGATCCAATGCCCTAGCTA
____________________________________________________________
consensus AACATTCAGCAATCTTTTCATCATCCGTCGCCACAACAACTTGATCCAATGCCCTAGCTA
. : . : . : . : . : . :
JMFF020E04+ ATTTCGCCCTTTCCCATGTTCTCTGGATCATGGGCTTGCCGAGGATATCTACGAGCGGTT
JMFF016D18+ ATTTCGCCCTTTCCCATGTTCTNTGGATCANGGGCTNGCCGAGGATATNTACGAGCGGTT
JMFF023A01+ TGGATCATGGGCTTGCCGAGGATATCTACGAGCGGTT
JMFF027I17+ ATTTCGCCCTTTCCCATGTTCTCTGGATCATGGGCTTGCCGAGGATATCTACGAGCGGTT
____________________________________________________________
consensus ATTTCGCCCTTTCCCATGTTCTCTGGATCATGGGCTTGCCGAGGATATCTACGAGCGGTT
. : . : . : . : . : . :
JMFF020E04+ TACCAGGGAACCGAGTGGAAGCGAAACGGGCGGGTATGATCCCGATGACCCGACTCCGGA
JMFF016D18+ TACCAGGGAACCGAGTGGAAGCGAAACGGGCGGGTATGATCCCGATGACCCGACTCCGGA
JMFF023A01+ TACCAGGGAACCGAGTGGAAGGGAAACGGGCGGGTATGATCCCGATGACCCGACTCCGGA
JMFF027I17+ TACCAGGGAACCGAGTGGAAGCGAAACGGGCGGGTATGATCCCGATGACCCGACTCCGGA
____________________________________________________________
consensus TACCAGGGAACCGAGTGGAAGCGAAACGGGCGGGTATGATCCCGATGACCCGACTCCGGA
. : . : . : . : . : . :
JMFF020E04+ ACTTCCCAGATCTAAGAAAGTATCTGTGAGCACCGAAAGCAACGGCCACTGCGGCTCCGG
JMFF016D18+ ACTTCCCAGATNTAAGAAAGTATCTGTGAGCACCGAAAGCAACGGCCACTGCGGCTCCGG
JMFF023A01+ ACTTCCCAGATCTAAGAAAGTATCTGTGAGCACCGAAAGCAACGGCCACTGCGGCTCCGG
JMFF027I17+ ACTTCCCAGATCTAAGAAAGTATCTGTGAGCACCGAAAGCAACGGCCACTGCGGCTCCGG
____________________________________________________________
consensus ACTTCCCAGATCTAAGAAAGTATCTGTGAGCACCGAAAGCAACGGCCACTGCGGCTCCGG
. : . : . : . : . : . :
JMFF020E04+ CCACCAGAGCGTGAACGAGCCACGATTTCGTTGAGCTCGACGACGTGGACGACGGCGGCG
JMFF016D18+ CCACCAGAGCGTGAACGAGCCNCGATTTCGTTGAGCTCGACGACGTGGACGACGGCGGCG
JMFF023A01+ CCACCAGAGCGTGAACGAGCCACGATTTCGTTGAGCTCGACGACGTGGACGACGGCGGCG
JMFF027I17+ CCACCAGAGCGTGAACGAGCCACGATTTCGTTGAGCTCGACGACGTGGACGACGGCGGCG
____________________________________________________________
consensus CCACCAGAGCGTGAACGAGCCACGATTTCGTTGAGCTCGACGACGTGGACGACGGCGGCG
. : . : . : . : . : . :
JMFF020E04+ ACGAGTTGCACATCGGCATTGCGCTTTTCCAGCTTCAGGGAACACGTGGGAAAGATTTAT
JMFF016D18+ ACGAGTTGCACATCGGCATTGCGCTTTTCCAGCTTCAGGGAACACGTGGGAAAGATTTAT
JMFF023A01+ ACGAGTTGCACATCGGCATTGCGCTTTTCCAGCTTCAGGGAACACGTGGGAAAGATTTAT
JMFF027I17+ ACGAGTTGCACATCGGCATTGCGCTTTTCCAGCTTCAGGGAACACGTGGGAAAGATTTAT
____________________________________________________________
consensus ACGAGTTGCACATCGGCATTGCGCTTTTCCAGCTTCAGGGAACACGTGGGAAAGATTTAT
. : . : . : . : . : . :
JMFF020E04+ AAGCCACTCCACCTGGATTTGCGGAGTATGATTAGCTCCAGAAACTGGCAGCCGATGACC
JMFF023A01+ AAGCCACTCCACCTGGATTTGCGGAGTATGATTAGCTCCAGAAACTGGCAGCCGATGACC
JMFF027I17+ AAGCCACTCCACCTGGATTTGCGGAGTATGATTAGCTCCAGAAACTGGCAGCCGATGACC
____________________________________________________________
consensus AAGCCACTCCACCTGGATTTGCGGAGTATGATTAGCTCCAGAAACTGGCAGCCGATGACC