clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF008M01 | Sequence | 495 | 005965 (9) | ref|XP_009780936.1| | 5e-81 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 654 | 002581 (9) | ref|XP_002540513.1| | 6e-89 | glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis] gb|EEF2187 |
JMFF022A03 | Sequence | 472 | 005965 (9) | ref|XP_009780936.1| | 8e-67 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 771 | 002581 (9) | ref|XP_011034836.1| | 5e-107 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
JMFF024H10 | Sequence | 560 | 005965 (9) | ref|XP_009780936.1| | 3e-81 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 757 | 002581 (9) | ref|XP_011034836.1| | 1e-111 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
JMSF002P10 | Sequence | 270 | 005965 (9) | ref|XP_009780936.1| | 1e-26 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 747 | 002581 (9) | ref|XP_011034836.1| | 2e-105 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
JMSF008L11 | Sequence | 377 | 005965 (9) | ref|XP_009780936.1| | 3e-53 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 761 | 002581 (9) | ref|XP_011034836.1| | 1e-89 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
JMSF010P24 | Sequence | 263 | 005965 (9) | ref|XP_009780936.1| | 3e-25 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | |||||
JMSF021N16 | Sequence | 636 | 005965 (9) | ref|XP_009780936.1| | 7e-115 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 752 | 002581 (9) | ref|XP_011034836.1| | 9e-118 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
JMSF034G15 | Sequence | 673 | 005965 (9) | ref|XP_009780936.1| | 1e-124 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 751 | 002581 (9) | ref|XP_011034836.1| | 2e-117 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
JMSF038B20 | Sequence | 661 | 005965 (9) | ref|XP_009780936.1| | 9e-125 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic-like [Nico | 833 | 002581 (9) | ref|XP_011034836.1| | 1e-107 | PREDICTED: glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 |
This contig is upended
. : . : . : . : . : . :
JMSF038B20+ TACGCCAACAACATAGGTTGGAATATCAGCCCCTTTTGCTGGGGCAGTGATGATA
JMSF034G15+ CCAACAACATAGGTTGGAATATCAGCCCCTTTTGCTGGGGCAGTGATGATA
JMSF021N16+ GCAGTGATGATA
____________________________________________________________
consensus TACGCCAACAACATAGGTTGGAATATCAGCCCCTTTTGCTGGGGCAGTGATGATA
. : . : . : . : . : . :
JMSF038B20+ ACTTTCTTTGCACCAGCTTGTATGTGCTTTCCAGCACCCGGACCATCCACAAACACTCCT
JMSF034G15+ ACTTTCTTTGCACCAGCTTGTATGTGCTTTCCAGCACCCGGACCATCCACAAACACTCCT
JMFF024H10+ CT
JMSF021N16+ ACTTTCTTTGCACCAGCTTGTATGTGCTTTCCAGCACCCGGACCATCCACAAACACTCCT
____________________________________________________________
consensus ACTTTCTTTGCACCAGCTTGTATGTGCTTTCCAGCACCCGGACCATCCACAAACACTCCT
. : . : . : . : . : . :
JMSF038B20+ GTTCCCTCAATAACAATGTCAATACCCATATCAGCCCAGGGAAGCTTGAGAGGAT-CCCT
JMSF034G15+ GTTCCCTCAATAACAATGTCAATACCCATATCAGCCCAGGGAAGCTTGAGAGGAT-CCCT
JMFF024H10+ GTTCCCTCAATAACAATGTCAATACCCATATCAGCCCAGGGAAGCTTGAGAGGATCCCCT
JMSF021N16+ GTTCCCTCAATAACAATGTCAATACCCATATCAGCCCAGGGAAGCTTGAGAGGAT-CCCT
____________________________________________________________
consensus GTTCCCTCAATAACAATGTCAATACCCATATCAGCCCAGGGAAGCTTGAGAGGAT-CCCT
. : . : . : . : . : . :
JMSF038B20+ GTTGGAGACAACCTTAATGGGCTTCCCATCAACAGAGATGGTCTCATTGTCCACTACCTT
JMSF034G15+ GTTGGAGACAACCTTAATGGGCTTCCCATCAACAGAGATGGTCTCATTGTCCACTACCTT
JMFF024H10+ GTTGGAGACAACCTTAATGGGCTTCCCATCAACAGAGATGGTCTCATTGTCCACTACCTT
JMFF008M01+ TGGAGACAACCTTAATGGGCTTCCCATCAACAGAGATGGTCTCATTGTCCACTACCTT
JMSF021N16+ GTTGGAGACAACCTTAATGGGCTTCCCATCAACAGAGATGGTCTCATTGTCCACTACCTT
____________________________________________________________
consensus GTTGGAGACAACCTTAATGGGCTTCCCATCAACAGAGATGGTCTCATTGTCCACTACCTT
. : . : . : . : . : . :
JMSF038B20+ CACATCTGCCTTGAAAGTTCCCAGCATGGAATCATACTTGAGCAAGTGAGCCGCATTCTT
JMSF034G15+ CACATCTGCCTTGAAAGTTCCCAGCATGGAATCATACTTGAGCAAGTGAGCCGCATTCTT
JMFF024H10+ CACATCTGCCTTGAAAGTTCCCAGCATGGAATCATACTTGAGCAAGTGAGCCGCATTCTT
JMFF008M01+ CACATCTGCCTTGAAAGTTCCCAGCATGGAATCATACTTGAGCAAGTGAGCCGCATTCTT
JMSF021N16+ CACATCTGCCTTGAAAGTTCCCAGCATGGAATCATACTTGAGCAAGTGAGCCGCATTCTT
JMFF022A03+ CCTTGAAAGTTCCCAGCATGGAATCATACTTGAGCAAGTGAGCCGCATTCTT
____________________________________________________________
consensus CACATCTGCCTTGAAAGTTCCCAGCATGGAATCATACTTGAGCAAGTGAGCCGCATTCTT
. : . : . : . : . : . :
JMSF038B20+ GACACCAGCACTGTCATTGACAACAATAACTTCCAATGGCGAATCCTTGCGCCCGTGCCA
JMSF034G15+ GACACCAGCACTGTCATTGACAACAATAACTTCCAATGGCGAATCCTTGCGCCCGTGCCA
JMFF024H10+ GACACCAGCACTGTCATTGACAACAATAACTTCCAATGGCGAATCCTTGCGCCCGTGCCA
JMFF008M01+ GACACCAGCACTGTCATTGACAACAATAACTTCCAATGGCGAATCCTTGCGCCCGTGCCA
JMSF008L11+ ACCAGCACTGTCATTGACAACAATAACTTCCAATGGCGAATCCTTGCGCCCGTGCCA
JMSF021N16+ GACACCAGCACTGTCATTGACAACAATAACTTCCAATGGCGAATCCTTGCGCCCGTGCCA
JMFF022A03+ GACACCAGCACTGTCATTGACAACAATAACTTCCAATGGCGAATCCTTGCGCCCGTGCCA
____________________________________________________________
consensus GACACCAGCACTGTCATTGACAACAATAACTTCCAATGGCGAATCCTTGCGCCCGTGCCA
. : . : . : . : . : . :
JMSF038B20+ GCAGCGCAGGAAGTTTCTACCAATGCGCCCAAAACCATTGATTGCAACCTTCAATTTGGC
JMSF034G15+ GCAGCGCAGGAAGTTTCTACCAATGCGCCCAAAACCATTGATTGCAACCTTCAATTTGGC
JMFF024H10+ GCAGCGCAGGAAGTTTCTACCAATGCGCCCAAAACCATTGATTGCAACCTTCAATTTGGC
JMSF010P24+ TTGGC
JMFF008M01+ GCAGCGCAGGAAGTTTCTACCAATGCGCCCAAAACCATTGATTGCAACCTTCAATTTGGC
JMSF008L11+ GCAGCGCAGGAAGTTTCTACCAATGCGCCCAAAACCATTGATTGCAACCTTCAATTTGGC
JMSF021N16+ GCAGCGCAGGAAGTTTCTACCAATGCGCCCAAAACCATTGATTGCAACCTTCAATTTGGC
JMSF002P10+ TCAATTTGGC
JMFF022A03+ GCAGCGCAGGAAGTTTCTACCAATGCGCCCAAAACCATTGATTGCAACCTTCAATTTGGC
____________________________________________________________
consensus GCAGCGCAGGAAGTTTCTACCAATGCGCCCAAAACCATTGATTGCAACCTTCAATTTGGC
. : . : . : . : . : . :
JMSF038B20+ AACAGTGACCCCCTTAACTGGGGCTCCTGTAGCTTTGGGAGTGAGTTGGGCAGCCACAAC
JMSF034G15+ AACAGTGACCCCCTTAACTGGGGCTCCTGTAGCTTTGGGAGTGAGTTGGGCAGCCACAAC
JMFF024H10+ AACAGTGACCCCCTTAACTGGGGCTCCTGTAGCTTTGGGAGTGAGTTGGGCAGCCACAAC
JMSF010P24+ AACAGTGACCCCCTTAACTGGGGCTCCTGTAGCTTTGGGAGTGAGTTGGGCAGCCACAAC
JMFF008M01+ AACAGTGACCCCCTTAACTGGGGCTCCTGTAGCTTTGGGAGTGAGTTGGGCAGCCACAAC
JMSF008L11+ AACAGTGACCCCCTTAACTGGGGCTCCTGTAGCTTTGGGAGTGAGTTGGGCAGCCACAAC
JMSF021N16+ AACAGTGACCCCCTTAACTGGGGCTCCTGTAGCTTTGGGAGTGAGTTGGGCAGCCACAAC
JMSF002P10+ AACAGTGACCCCCTTAACTGGGGCTCCTGTAGCTTTGGGAGTGAGTTGGGCAGCCACAAC
JMFF022A03+ AACAGTGACCCCCTTAACTGGGGCTCCTGTAGCTTTGGGAGTGAGTTGGGCAGCCACAAC
____________________________________________________________
consensus AACAGTGACCCCCTTAACTGGGGCTCCTGTAGCTTTGGGAGTGAGTTGGGCAGCCACAAC
. : . : . : . : . : . :
JMSF038B20+ ATCAGAGAAGGAAGCTTCCCTGTTAGAAAACGTAACACATCCACTTGAACGCAGACCAGA
JMSF034G15+ ATCAGAGAAGGAAGCTTCCCTGTTAGAAAACGTAACACATCCACTTGAACGCAGACCAGA
JMFF024H10+ ATCAGAGAAGGAAGCTTCCCTGTTAGAAAACGTAACACATCCACTTGAACGCAGACCAGA
JMSF010P24+ ATCAGAGAAGGAAGCTTCCCTGTTAGAAAACGTAACACATCCACTTGAACGCAGACCAGA
JMFF008M01+ ATCAGAGAAGGAAGCTTCCCTGTTAGAAAACGTAACACATCCACTTGAACGCAGACCAGA
JMSF008L11+ ATCAGAGAAGGAAGCTTCCCTGTTAGAAAACGTAACACATCCACTTGAACGCAGACCAGA
JMSF021N16+ ATCAGAGAAGGAAGCTTCCCTGTTAGAAAACGTAACACATCCACTTGAACGCAGACCAGA
JMSF002P10+ ATCAGAGAAGGAAGCTTCCCTGTTAGAAAACGTAACACATCCACTTGAACGCAGACCAGA
JMFF022A03+ ATCAGAGAAGGAAGCTTCCCTGTTAGAAAACGTAACACATCCACTTGAACGCAGACCAGA
____________________________________________________________
consensus ATCAGAGAAGGAAGCTTCCCTGTTAGAAAACGTAACACATCCACTTGAACGCAGACCAGA
. : . : . : . : . : . :
JMSF038B20+ GAACTCAGCCACTTCTAGCCTCTTGGAGAAGCATTGAGGAGTGGAGGTCTTGGAGGGAAG
JMSF034G15+ GAACTCAGCCACTTCTAGCCTCTTGGAGAAGCATTGAGGAGTGGAGGTCTTGGAGGGAAG
JMFF024H10+ GAACTCAGCCACTTCTAGCCTCTTGGAGAAGCATTGAGGAGTGGAGGTCTTGGAGGGAAG
JMSF010P24+ GAACTCAGCCACTTCTAGCCTCTTGGAGAAGCATTGAGGAGTGGAGGTCTTGGAGGGAAG
JMFF008M01+ GAACTCAGCCACTTCTAGCCTCTTGGAGAAGCATTGAGGAGTGGAGGTCTTGGAGGGAAG
JMSF008L11+ GAACTCAGCCACTTCTAGCCTCTTGGAGAAGCATTGAGGAGTGGAGGTCTTGGAGGGAAG
JMSF021N16+ GAACTCAGCCACTTCTAGCCTCTTGGAGAAGCATTGAGGAGTGGAGGTCTTGGAGGGAAG
JMSF002P10+ GAACTCAGCCACTTCTAGCCTCTTGGAGAAGCATTGAGGAGTGGAGGTCTTGGAGGGAAG
JMFF022A03+ GAACTCAGCCACTTCTAGCCTCTTGGAGAAGCATTGAGGAGTGGAGGTCTTGGAGGGAAG
____________________________________________________________
consensus GAACTCAGCCACTTCTAGCCTCTTGGAGAAGCATTGAGGAGTGGAGGTCTTGGAGGGAAG
. : . : . : . : . : . :
JMSF038B20+ CCTGGTTCGGGTTGGGATTCTTGAATAAACTAGAGCTGCATGGGAAGCCATGGCTGCAAC
JMSF034G15+ CCTGGTTCGGGTTGGGATTCTTGAATAAACTAGAGCTGCATGGGAAGCCATGGCTGCAAC
JMFF024H10+ CCTGGTTCGGGTTGGGATTCTTGAATAAACTAGAGCTGCATGGGAAGCCATGGCTGCAAC
JMSF010P24+ CCTGGTTCGGGTTGGGATTCTTGAATAAACTAGAGCTGCATGGGAAGCCATGGCTGCAAC
JMFF008M01+ CCTGGTTCGGGTTGGGATTCTTGAATAAACTAGAGCTGCATGGGAAGCCATGGCTGCAAC
JMSF008L11+ CCTGGTTCGGGTTGGGATTCTTGAATAAACTAGAGCTGCATGGGAAGCCATGGCTGCAAC
JMSF021N16+ CCTGGTTCGGGTTGGGATTCTTGAATAAACTAGAGCTGCATGGGAAGCCATGGCTGCAAC
JMSF002P10+ CCTGGTTCGGGTTGGGATTCTTGAATAAACTAGAGCTGCATGGGAAGCCATGGCTGCAAC
JMFF022A03+ CCTGGTTCGGGTTGGGATTCTTGAATAAACTAGAGCTGCATGGGAAGCCATGGCTGCAAC
____________________________________________________________
consensus CCTGGTTCGGGTTGGGATTCTTGAATAAACTAGAGCTGCATGGGAAGCCATGGCTGCAAC
. : . : . : . : . : . :
JMSF038B20+ TGC
JMSF034G15+ TGCAACAACTTCAGGACC
JMFF024H10+ TGCAACAACTTCAGGACC
JMSF010P24+ TGCAACAACTTCAGG
JMFF008M01+ TGCAACAACTTCAGGAC
JMSF008L11+ TGCAACAACTTCAGGACC
JMSF021N16+ TGCAACAACTTCAGGACC
JMSF002P10+ TGCAACAACTTCAGGACC
JMFF022A03+ TGCAACAACTTCAGGACCAACTTACAAATCCTGATTTCCCAGTTATTTATACTACATTTC
____________________________________________________________
consensus TGCAACAACTTCAGGACCAACTTACAAATCCTGATTTCCCAGTTATTTATACTACATTTC