Contig 005959:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014H20Sequence550005959 (2)ref|XP_006349816.1|8e-26PREDICTED: ubiquitin-like-specific protease ESD4-like [Solanum tuberosum]762005377 (2)ref|XP_009612677.1|5e-73PREDICTED: ubiquitin-like-specific protease ESD4 isoform X2 [Nicotiana tomentos
JMFF020F18Sequence525005959 (2)ref|XP_006342802.1|4e-19PREDICTED: ubiquitin-like-specific protease ESD4-like isoform X2 [Solanum tuber716005377 (2)ref|XP_009612677.1|2e-63PREDICTED: ubiquitin-like-specific protease ESD4 isoform X2 [Nicotiana tomentos

Alignment

This contig is upended


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JMFF014H20+                                      CCTCCACAGTCGAATCCTCAGAAGCATCCTCTT
                      ____________________________________________________________
consensus                                        CCTCCACAGTCGAATCCTCAGAAGCATCCTCTT
 
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JMFF014H20+           TCCTAGTATCACTATCAATCTCAATCACCTCCTTCCCATACCTCGAGCTCTCAAGTCCCC
                      ____________________________________________________________
consensus             TCCTAGTATCACTATCAATCTCAATCACCTCCTTCCCATACCTCGAGCTCTCAAGTCCCC
 
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JMFF014H20+           TCGCTTTCTCCTTCTTGGACGGCCTACCGAACAAATTCCCCATTTCACTACCGAACTTCT
JMFF020F18+                          TGGACGGCCTACCGAACAAATTCCCCATTTCACTACCGAACTTCT
                      ____________________________________________________________
consensus             TCGCTTTCTCCTTCTTGGACGGCCTACCGAACAAATTCCCCATTTCACTACCGAACTTCT
 
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JMFF014H20+           CTCTAAAATCACCGCTGCTCGATGAATTCCTCGAATTCGCAGAAAAACCGAATCTGCTCT
JMFF020F18+           CTCTAAAATCACCGCTGCTCGATGAATTCCTCGAATTCGCAGAAAAACCGAATCTGCTCT
                      ____________________________________________________________
consensus             CTCTAAAATCACCGCTGCTCGATGAATTCCTCGAATTCGCAGAAAAACCGAATCTGCTCT
 
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JMFF014H20+           GTCTACAAGGAGCGTGAACTTCTCTTCTTATAGGGGCAACCACTTCCGGGTAACGGAAAA
JMFF020F18+           GTCTACAAGGAGCGTGAACTTCTCTTCTTATAGGGGCAACCACTTCCGGGTAACGGAAAA
                      ____________________________________________________________
consensus             GTCTACAAGGAGCGTGAACTTCTCTTCTTATAGGGGCAACCACTTCCGGGTAACGGAAAA
 
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JMFF014H20+           GCCTCGAAACTATGGACTTCGCCGAGACGGGTCGAGCCAAATCAGGACCTTGTTGTACGA
JMFF020F18+           GCCTCGAAACTATGGACTTCGCCGAGACGGGTCGAGCCAAATCAGGACCTTGTTGTACGA
                      ____________________________________________________________
consensus             GCCTCGAAACTATGGACTTCGCCGAGACGGGTCGAGCCAAATCAGGACCTTGTTGTACGA
 
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JMFF014H20+           CGGAAGGCGAAAGCCTGGGTTTTTTCGAAACGTGATCGAAATTGGGCACCGGGGTTCTGT
JMFF020F18+           CGGAAGGCGAAAGCCTGGGTTTTTTCGAAACGTGATCGAAATTGGGCACCGGGGTTCTGT
                      ____________________________________________________________
consensus             CGGAAGGCGAAAGCCTGGGTTTTTTCGAAACGTGATCGAAATTGGGCACCGGGGTTCTGT
 
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JMFF014H20+           GATTCACTGCGAAATAATCCTCGCCGCGTTTCCGATTGATCGTTAATGCTCCCATTGCAG
JMFF020F18+           GATTCACTGCGAAATAATCCTCGCCGCGTTTCCGATTGATCGTTAATGCTCCCATTGCAG
                      ____________________________________________________________
consensus             GATTCACTGCGAAATAATCCTCGCCGCGTTTCCGATTGATCGTTAATGCTCCCATTGCAG
 
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JMFF014H20+           AAACTCAAAAACCCGACGGAACCCTAGAATGAATCGCCGTCGATACATGGAGCACTCGAC
JMFF020F18+           AAACTCAAAAACCCGACGGAACCCTAGAATGAATCGCCGTCGATACATGGAGCACTCGAC
                      ____________________________________________________________
consensus             AAACTCAAAAACCCGACGGAACCCTAGAATGAATCGCCGTCGATACATGGAGCACTCGAC
 
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JMFF014H20+           TCTCCGACTAAAACAAGCACCAAACCAAGTACTTCAC                       
JMFF020F18+           TCTCCGACTAAAACAAGCACCAAACCAAGTACTTCACAAGTATCACCAAAATTTGAACCA
                      ____________________________________________________________
consensus             TCTCCGACTAAAACAAGCACCAAACCAAGTACTTCACAAGTATCACCAAAATTTGAACCA
 
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JMFF020F18+           GAGATTTTAAAGCCTGATCTCCACAAGTGCATACATGATTTGCTCACTACAATATTTCAT
                      ____________________________________________________________
consensus             GAGATTTTAAAGCCTGATCTCCACAAGTGCATACATGATTTGCTCACTACAATATTTCAT