| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018O17 | Sequence | 532 | 005954 (8) | ref|XP_011088208.1| | 1e-53 | PREDICTED: protein TIC 21, chloroplastic [Sesamum indicum] | 708 | 005954 (8) | ref|XP_011088208.1| | 2e-99 | PREDICTED: protein TIC 21, chloroplastic [Sesamum indicum] |
| JMSF013F01 | Sequence | 300 | 005954 (8) | ref|XP_011088208.1| | 6e-08 | PREDICTED: protein TIC 21, chloroplastic [Sesamum indicum] | 711 | 005954 (8) | ref|XP_011088208.1| | 4e-102 | PREDICTED: protein TIC 21, chloroplastic [Sesamum indicum] |
| JMSF014E15 | Sequence | 501 | 005954 (8) | ref|XP_011088208.1| | 3e-48 | PREDICTED: protein TIC 21, chloroplastic [Sesamum indicum] | 777 | 005954 (8) | ref|XP_006647012.1| | 4e-43 | PREDICTED: protein TIC 21, chloroplastic-like [Oryza brachyantha] |
| JMSF016M20 | Sequence | 491 | 005954 (8) | ref|XP_011088208.1| | 3e-48 | PREDICTED: protein TIC 21, chloroplastic [Sesamum indicum] | 741 | 005954 (8) | ref|XP_002285372.1| | 1e-38 | PREDICTED: protein TIC 21, chloroplastic [Vitis vinifera] emb|CBI40266.3| unname |
This contig is upended
. : . : . : . : . : . :
rJMSF014E15- GAGGAATTACGGAGCTCTCAAGGGAGAGCTTCCTAGCCA
____________________________________________________________
consensus GAGGAATTACGGAGCTCTCAAGGGAGAGCTTCCTAGCCA
. : . : . : . : . : . :
rJMSF016M20- CATTTCTAGTCTCAAATTGCTCTTCTAGTGCAAAGAACACAAATAATCCTTTCTCCACCG
rJMSF014E15- CATTTCTAGTCTCAAATTGCTCTTCTAGTGCAAAGAACACAAATAATCCTTTCTCCACCG
____________________________________________________________
consensus CATTTCTAGTCTCAAATTGCTCTTCTAGTGCAAAGAACACAAATAATCCTTTCTCCACCG
. : . : . : . : . : . :
rJMSF016M20- CCCACAGTCGGTGCCGCCGCCACAGCAACGTTTCCCTTCCCCTCCTCGAGCTGTGGCTGC
rJMSF014E15- CCCACAGTCGGTGCCGCCGCCACAGCAACGTTTCCCTTCCCCTCCTCGAGCTGTGGCTGC
____________________________________________________________
consensus CCCACAGTCGGTGCCGCCGCCACAGCAACGTTTCCCTTCCCCTCCTCGAGCTGTGGCTGC
. : . : . : . : . : . :
rJMSF016M20- CGATGTAGCGGCGGCGGAGGTTGCACAATATCCCCGGTGGGCACCTCGCTTGAGAAGAAC
rJMSF014E15- CGATGTAGCGGCGGCGGAGGTTGCACAATATCCCCGGTGGGCACCTCGCTTGAGAAGAAC
____________________________________________________________
consensus CGATGTAGCGGCGGCGGAGGTTGCACAATATCCCCGGTGGGCACCTCGCTTGAGAAGAAC
. : . : . : . : . : . :
rJMSF016M20- ACCCAGGAGAAGGGTCCTCTGATGGATGGAGATTCCAACAAAGTGCAGTACAGTCCTGTC
rJMSF014E15- ACCCAGGAGAAGGGTCCTCTGATGGATGGAGATTCCAACAAAGTGCAGTACAGTCCTGTC
____________________________________________________________
consensus ACCCAGGAGAAGGGTCCTCTGATGGATGGAGATTCCAACAAAGTGCAGTACAGTCCTGTC
. : . : . : . : . : . :
rJMSF016M20- CTTGATAATAAAATGGATGCAACATACAAAGCTAAACCTCACTTATACAATTAAACGACA
rJMSF014E15- CTTGATAATAAAATGGATGCAACATACAAAGCTAAACCTCACTTATACAATTAAACGACA
rJMFF018O17- ATTAAACGACA
____________________________________________________________
consensus CTTGATAATAAAATGGATGCAACATACAAAGCTAAACCTCACTTATACAATTAAACGACA
. : . : . : . : . : . :
rJMSF016M20- ATGTTATTCCAGTGTTAACCATCACCAGATTACACTTTTTTAAGTAGAGCTCATGCAACC
rJMSF014E15- ATGTTATTCCAGTGTTAACCATCACCAGATTACACTTTTTTAAGTAGAGCTCATGCAACC
rJMFF018O17- ATGTTATTCCAGTGTTAACCATCACCAGATTACACTTTTTTAAGTAGAGCTCATGCAACC
rJMSF013F01- CCATCACCAGATTACACTTTTTTAAGTAGAGCTCATGCAACC
____________________________________________________________
consensus ATGTTATTCCAGTGTTAACCATCACCAGATTACACTTTTTTAAGTAGAGCTCATGCAACC
. : . : . : . : . : . :
rJMSF016M20- TTAGGAACAGGAACAGGAATGCTTTCAGAAGGTGGCGGTAATGTTACTGAGCGCAATAGT
rJMSF014E15- TTAGGAACAGGAACAGGAATGCTTTCAGAAGGTGGCGGTAATGTTACTGAGCGCAATAGT
rJMFF018O17- TTAGGAACAGGAACAGGAATGCTTTCAGAAGGTGGCGGTAATGTTACTGAGCGCAATAGT
rJMSF013F01- TTAGGAACAGGAACAGGAATGCTTTCAGAAGGTGGCGGTAATGTTACTGAGCGCAATAGT
____________________________________________________________
consensus TTAGGAACAGGAACAGGAATGCTTTCAGAAGGTGGCGGTAATGTTACTGAGCGCAATAGT
. : . : . : . : . : . :
rJMSF016M20- TCCAGTGAGAATAACAGCCCAAGAAAGTGTGATAAAATAGTGTTTGCTGATGCCTGTACC
rJMSF014E15- TCCAGTGAGAATAACAGCCCAAGAAAGTGTGATAAAATAGTGTTTGCTGATGCCTGTACC
rJMFF018O17- TCCAGTGAGAATAACAGCCCAAGAAAGTGTGATAAAATAGTGTTTGCTGATGCCTGTACA
rJMSF013F01- TCCAGTGAGAATAACAGCCCAAGAAAGTGTGATAAAATAGTGTTTGCTGATGCCTGTACC
____________________________________________________________
consensus TCCAGTGAGAATAACAGCCCAAGAAAGTGTGATAAAATAGTGTTTGCTGATGCCTGTACC
. : . : . : . : . : . :
rJMSF016M20- AAAATCACATCCAATGCAAGCACAGGGCTACTACCAGGGGAAATACCCTGATAGTATGGA
rJMSF014E15- AAAATCACATCCAATGCAAGCACAGGGCTACTACCAGGGGAAATACCCTGATAGTATGGA
rJMFF018O17- AAAATCACATCCAATGCAAGCACAGGGCTACTACCAGGGGAAATACCCTGATAGTATGGA
rJMSF013F01- AAAATCACATCCAATGCAAGCACAGGGCTACTACCAGGGGAAATACCCTGATAGTATGGA
____________________________________________________________
consensus AAAATCACATCCAATGCAAGCACAGGGCTACTACCAGGGGAAATACCCTGATAGTATGGA
. : . : . : . : . : . :
rJMSF016M20- ACACTTGAGGTGGTAAGAGCCTTAGCTGACAACCAACCTACCGTGGCTTGCAACCCAACT
rJMSF014E15- ACACTTGAGGTGGTAAGAGCCTTAGCTGACAACCAACCTACCGTGGCTTGCAACCCAACT
rJMFF018O17- ACACTTGAGGTGGTAAGAGCCTTAGCTGACAACCAACCTACCGTGGCTTGCAACCCAACT
rJMSF013F01- ACACTTGAGGTGGTAAGAGCCTTAGCTGACAACCAACCTACCGTGGCTTGCAACCCAACT
____________________________________________________________
consensus ACACTTGAGGTGGTAAGAGCCTTAGCTGACAACCAACCTACCGTGGCTTGCAACCCAACT
. : . : . : . : . : . :
rJMSF016M20- ACAGCAGCACCCATTCCCACAAGGTTCAACGCAATCCCATTTTTCAAGCTTTTCACCACA
rJMSF014E15- ACAGCAGCACCCATTCCCACAAGGTTCAACGCAATCCCATTTTTCAAGCTTTTCACCACA
rJMFF018O17- ACAGCAGCACCCATTCCCACAAGGTTCAACGCAATCCCATTTTTCAAGCTTTTCACCACA
rJMSF013F01- ACAGCAGCACCCATTCCCACAAGGTTCAACGCAATCCCATTTTTCAAGCTTTTCACCACA
____________________________________________________________
consensus ACAGCAGCACCCATTCCCACAAGGTTCAACGCAATCCCATTTTTCAAGCTTTTCACCACA
. : . : . : . : . : . :
rJMSF016M20- TCAGCACGAGGAGGAGCCTTTGAAGGCTCACTGGCTG-TTTCTTTAGCTTCGCAGACAAG
rJMSF014E15- TCAGCACGAGGAGGAGCCTTTGAAGGCTCACTGGCTGTTTTCTTTAGCTTCGCAGACAAG
rJMFF018O17- TCAGCACGAGGAGGAGCCTTTGAAGGCTCACTGGCTGTTTTCTTTAGCTTCGCAGACAAG
rJMSF013F01- TCAGCACGAGGAGGAGCCTTTGAAGGCTCACTGGCTGTTTTCTTTAGCTTCGCAGACAAG
____________________________________________________________
consensus TCAGCACGAGGAGGAGCCTTTGAAGGCTCACTGGCTGTTTTCTTTAGCTTCGCAGACAAG
. : . : . : . : . : . :
rJMSF016M20- CGAAGATAACC
rJMSF014E15- CGAAGATAACCCAAA
rJMFF018O17- CGAAGATAACCAAAAGACCAGAAAACAGAAAGAAAAGCTGCAGCAATTCCAGCAGCAGTT
rJMSF013F01- CGAAGATAACCAAAAGACCAGAAAACAGAAAGAAAAGCTGCAGCAATTCCAGCAGCAGTT
JMSF014E15+ CAGAAAGAAAAGCTGCAGCAATTCCAGCAGCAGTT
JMSF016M20+ CAGAAAGAAAAGCTGCAGCAATTCCAGCAGCAGTT
JMFF018O17+ ACCAAAAGACCAGAAAACAGAAAGAAAAGCTGCAGCAATTCCAGCAGCAGTT
____________________________________________________________
consensus CGAAGATAACCAAAAGACCAGAAAACAGAAAGAAAAGCTGCAGCAATTCCAGCAGCAGTT
. : . : . : . : . : . :
rJMFF018O17- GAGTAGAATGTAAAGGGTGATGTGATCTTCCCAGTGATAACTACAGAAAAAGAAAGGATC
rJMSF013F01- GAGTAGAATGTAAAGGGTGATGTGATCTTCCCAGTGATAACTACAGAAAAAGAAAGGATC
JMSF014E15+ GAGTAGAATGTAAAGGGTGATGTGATCTTCCCAGTGATAACTACAGAAAAAGAAAGGATC
JMSF016M20+ GAGTAGAATGTAAAGGGTGATGTGATCTTCCCAGTGATAACTACAGAAAAAGAAAGGATC
JMFF018O17+ GAGTAGAATGTAAAGGGTGATGTGATCTTCCCAGTGATAACTACAGAAAAAGAAAGGATC
____________________________________________________________
consensus GAGTAGAATGTAAAGGGTGATGTGATCTTCCCAGTGATAACTACAGAAAAAGAAAGGATC
. : . : . : . : . : . :
rJMFF018O17- CCAGCAGCAACGACTGTGCAAACCAGCTGCCCCCAAAACCCTATACTACCCAATCTCTTG
rJMSF013F01- CCAGCAGCAACGACTGTGCAAACCAGCTGCCCCCAAAACCCTATACTACCCAATCTCTTG
JMSF014E15+ CCAGCAGCAACGACTGTGCAAACCAGCTGCCCCCAAAACCCTATACTACCCAATCTCTTG
JMSF016M20+ CCAGCAGCAACGACTGTGCAAACCAGCTGCCCCCAAAACCCTATACTACCCAATCTCTTG
JMFF018O17+ CCAGCAGCAACGACTGTGCAAACCAGCTGCCCCCAAAACCCTATACTACCCAATCTCTTG
____________________________________________________________
consensus CCAGCAGCAACGACTGTGCAAACCAGCTGCCCCCAAAACCCTATACTACCCAATCTCTTG
. : . : . : . : . : . :
rJMFF018O17- AAATACCTTGAAGTACTCTCCAATCTCTTTGAGACCTGAGCGAGCTTCGCTTTTTCCGAT
rJMSF013F01- AAATACCTTGAAGTACTCTCCAATCTCTTTGAGACCTGAGCGAGCTTCGCTTTTTCCGAT
JMSF014E15+ AAATACCTTGAAGTACTCTCCAATCTCTTTGAGACCTGAGCGAGCTTCGCTTTTTCCGAT
JMSF016M20+ AAATACCTTGAAGTACTCTCCAATCTCTTTGAGACCTGAGCGAGCTTCGCTTTTTCCGAT
JMSF013F01+ CCTGAGCGAGCTTCGCTTTTTCCGAT
JMFF018O17+ AAATACCTTGAAGTACTCTCCAATCTCTTTGAGACCTGAGCGAGCTTCGCTTTTTCCGAT
____________________________________________________________
consensus AAATACCTTGAAGTACTCTCCAATCTCTTTGAGACCTGAGCGAGCTTCGCTTTTTCCGAT
. : . : . : . : . : . :
rJMFF018O17- TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGA
rJMSF013F01- TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGACCCGCGGCGGCGAGGGTTCTACTC
JMSF014E15+ TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGACCCGCGGCGGCGAGGGTTCTACTC
JMSF016M20+ TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGACCCGCGGCGGCGAGGGTTCTACTC
JMSF013F01+ TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGACCCGCGGCGGCGAGGGTTCTACTC
JMFF018O17+ TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGACCCGCGGCGGCGAGGGTTCTACTC
____________________________________________________________
consensus TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGACCCGCGGCGGCGAGGGTTCTACTC
. : . : . : . : . : . :
rJMSF013F01- CTTGTGTAA
JMSF014E15+ CTTGTGTAAATGAGACTTGAGTAAGGTGGAGAGAGAAATCGTTGAGCCTGTGAGGATGTG
JMSF016M20+ CTTGTGTAAATGAGACTTGAGTAAGGTGGAGAGAGAAATCGTTGAGCCTGTGAGGATGTG
JMSF013F01+ CTTGTGTAAATGAGACTTGAGTAAGGTGGAGAGAGAAATCGTTGAGCCTGTGAGGATGTG
JMFF018O17+ CTTGTGTAAATGAGACTTGAGTAAGGTGGAGAGAGAAATCGTTGAGCCTGTGAGGATGTG
____________________________________________________________
consensus CTTGTGTAAATGAGACTTGAGTAAGGTGGAGAGAGAAATCGTTGAGCCTGTGAGGATGTG
. : . : . : . : . : . :
JMSF014E15+ AGACTGTGGGGTAACGTGATAGGAATCGGGGAAATTAGGGGGCGTAAAATATTAAGCGGA
JMSF016M20+ AGACTGTGGGGTAACGTGATAGGAATCGGGGAAATTAGGGGGCGTAAAATATTAAGCGGA
JMSF013F01+ AGACTGTGGGGTAACGTGATAGGAATCGGGGAAATTAGGGGGCGTAAAATATTAAGCGGA
JMFF018O17+ AGACTGTGGGGTAACGTGATAGGAATCGGGGAAATTAGGGGGCGTAAAATATTAAGCGGA
____________________________________________________________
consensus AGACTGTGGGGTAACGTGATAGGAATCGGGGAAATTAGGGGGCGTAAAATATTAAGCGGA
. : . : . : . : . : . :
JMSF014E15+ ATGCGTTTCGCCACGACCGGCGAGATCATCGGCAAAGGTGGAGGTGCGCCACCGGAGCGC
JMSF016M20+ ATGCGTTTCGCCACGACCGGCGAGATCATCGGCAAAGGTGGAGGTGCGCCACCGGAGCGC
JMSF013F01+ ATGCGTTTCGCCACGACCGGCGAGATCATCGGCAAAGGTGGAGGTGCGCCACCGGAGCGC
JMFF018O17+ ATGCGTTTCGCCACGACCGGCGAGATCATCGGCAAAGGTGGAGGTGCGCCACCGGAGCGC
____________________________________________________________
consensus ATGCGTTTCGCCACGACCGGCGAGATCATCGGCAAAGGTGGAGGTGCGCCACCGGAGCGC
. : . : . : . : . : . :
JMSF014E15+ GTAGCCGGCAAAAGTAGTGTCTGCATATCGAGTGATGAGCC
JMSF016M20+ GTAGCCGGCAAAAGTAGTGTCTGCATATCGAGT
JMSF013F01+ GTAGCCGGCAAAAGTAGTGTCTGCATATCGAGT
JMFF018O17+ GTAGCCGGCAAAAGTAGTGTCTGCATATCGAGTGATGAGCCAATTTGAGTTGTCCTTATT
____________________________________________________________
consensus GTAGCCGGCAAAAGTAGTGTCTGCATATCGAGTGATGAGCCAATTTGAGTTGTCCTTATT