Contig 005951:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018M02Sequence593005951 (2)ref|XP_006349021.1|5e-23PREDICTED: CRS2-associated factor 2, chloroplastic-like [Solanum tuberosum]397016955gb|KDO82354.1|2e-11hypothetical protein CISIN_1g018444mg [Citrus sinensis]
JMFS160G06Sequence616005951 (2)ref|XP_006349021.1|4e-30PREDICTED: CRS2-associated factor 2, chloroplastic-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160G06+                                             TTCCCGGATTGCCAGGGGCTGAGCCT
                      ____________________________________________________________
consensus                                               TTCCCGGATTGCCAGGGGCTGAGCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160G06+           TGGGCGTCTCAGAATAACTGTATTGGAACTCAAATGGAGCCCCGGGGAGGCGGTATGACA
JMFF018M02+                  CTCAGAATAACTGTATTGGAACTCAAATGGAGCCCCGGGGAGGCGGTATGACA
                      ____________________________________________________________
consensus             TGGGCGTCTCAGAATAACTGTATTGGAACTCAAATGGAGCCCCGGGGAGGCGGTATGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160G06+           CGCCAGAGTCACCGACGATGACGGCGCGATCCCCATCCGCTGAGATGACTTCCCCTGGCT
JMFF018M02+           CGCCAGAGTCACCGACGATGACGGCGCGATCCCCATCCGCTGAGATGACTTCCCCTGGCT
                      ____________________________________________________________
consensus             CGCCAGAGTCACCGACGATGACGGCGCGATCCCCATCCGCTGAGATGACTTCCCCTGGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160G06+           TAACCGGCTTGTGGTATTTGGAGTTATGGTGGTGGGTCTTAAACCCCGGGTTGTTCTTGG
JMFF018M02+           TAACCGGCTTGTGGTATTTGGAGTTATGGTGGTGGGTCTTAAACCCCGGGTTGTTCTTGG
                      ____________________________________________________________
consensus             TAACCGGCTTGTGGTATTTGGAGTTATGGTGGTGGGTCTTAAACCCCGGGTTGTTCTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160G06+           GTTTCTGTAGAGGTTTTGGATGATTGTTGGATCGCTTTTGGAATTTTAAAGGAGGTGGGT
JMFF018M02+           GTTTCTGTAGAGGTTTTGGATGATTGTTGGATCGCTTTTGGAATTTTAAAGGAGGTGGGT
                      ____________________________________________________________
consensus             GTTTCTGTAGAGGTTTTGGATGATTGTTGGATCGCTTTTGGAATTTTAAAGGAGGTGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160G06+           ACTTGGGTATGGGGATGGGTGGTTGTGGAGGCAGTGCATTGCGGCGGGTATCACCGGAAG
JMFF018M02+           ACTTGGGTATGGGGATGGGTGGTTGTGGAGGCAGTGCATTGCGGCGGGTATCACCGGAAG
                      ____________________________________________________________
consensus             ACTTGGGTATGGGGATGGGTGGTTGTGGAGGCAGTGCATTGCGGCGGGTATCACCGGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160G06+           AAGACGGCGGCGGAGTGGTGGGCAGATTGGAGAAGAGGTCGAAGCCTTTCAGTGTTGCTA
JMFF018M02+           AAGACGGCGGCGGAGTGGTGGGCAGATTGGAGAAGAGGTCGAAGCCTTTCAGTGTTGCTA
                      ____________________________________________________________
consensus             AAGACGGCGGCGGAGTGGTGGGCAGATTGGAGAAGAGGTCGAAGCCTTTCAGTGTTGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160G06+           GAATTGCCATCAATCAAAGCAATAATCTTGAGAATTACACAGCGAGAGACACTACCAAAC
JMFF018M02+           GAATTGCCATCAATCAAAGCAATAATCTTGAGAATTACACAGCGAGAGACACTACCAAAC
                      ____________________________________________________________
consensus             GAATTGCCATCAATCAAAGCAATAATCTTGAGAATTACACAGCGAGAGACACTACCAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160G06+           AACACATATTCACTGCTGGCAATTCCTGGACCGTTCGTCGGTGAGCGAGTGAGGCGGCGG
JMFF018M02+           AACACATATTCACTGCTGGCAATTCCTGGACCGTTCGTCGGTGAGCGAGTGAGGCGGCGG
                      ____________________________________________________________
consensus             AACACATATTCACTGCTGGCAATTCCTGGACCGTTCGTCGGTGAGCGAGTGAGGCGGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160G06+           AGCAGGCAACCGGCGAAGAACTCAGAGGTGGTGGACAATGGAGTTCACCGGCGACGTCGC
JMFF018M02+           AGCAGGCAACCGGCGAAGAACTCAGAGGTGGTGGACAATGGAGTTCACCGGCGACGTCGC
                      ____________________________________________________________
consensus             AGCAGGCAACCGGCGAAGAACTCAGAGGTGGTGGACAATGGAGTTCACCGGCGACGTCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS160G06+           GAGGAGCTTGGAGGCGGTTCTATTGCGACGAGACCACTGCCAGAAGATGG          
JMFF018M02+           GAGGAGCTTGGAGGCGGTTCTATTGCGACGAGACCACTGCCAGAAGATGGGATTACGACC
                      ____________________________________________________________
consensus             GAGGAGCTTGGAGGCGGTTCTATTGCGACGAGACCACTGCCAGAAGATGGGATTACGACC