| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008O03 | Sequence | 623 | 005945 (4) | ref|XP_009778271.1| | 3e-25 | PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris] | 708 | 003958 (6) | ref|XP_009629097.1| | 5e-59 | PREDICTED: autophagy-related protein 18a [Nicotiana tomentosiformis] |
| JMFF017G08 | Sequence | 539 | 005945 (4) | emb|CAN67661.1| | 4e-18 | hypothetical protein VITISV_044410 [Vitis vinifera] | 754 | 003958 (6) | ref|XP_009778271.1| | 4e-116 | PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris] |
| JMFF026J17 | Sequence | 548 | 005945 (4) | ref|XP_006344646.1| | 7e-24 | PREDICTED: autophagy-related protein 18a-like [Solanum tuberosum] | 766 | 003958 (6) | ref|XP_009778271.1| | 2e-150 | PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris] |
| JMFN014C20 | Sequence | 621 | 005945 (4) | ref|XP_009778271.1| | 2e-53 | PREDICTED: autophagy-related protein 18a [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
JMFN014C20+ GAGCGAAAGGATAGCTC
____________________________________________________________
consensus GAGCGAAAGGATAGCTC
. : . : . : . : . : . :
JMFN014C20+ TCCGATGCACCTGGACTGATGATCGTCCCAGATCATGACCTTATTCAAAGGATACTGTGG
JMFF008O03+ ACTGATGATCGTCCCAGATCATGACCTTATTCAAAGGATACTGTGG
____________________________________________________________
consensus TCCGATGCACCTGGACTGATGATCGTCCCAGATCATGACCTTATTCAAAGGATACTGTGG
. : . : . : . : . : . :
JMFN014C20+ TTCCGGCCCTCCCCCAA-CCAGCGACAGAATATTACAACGGAATAGCATCTGAACAACCC
JMFF026J17+ CCAGCGACAGAATATTACAACGGAATAGCATCTGAACAACCC
JMFF008O03+ TTCCGGCCCTCCCCCAACCCAGCGACAGAATATTACAACGGAATAGCATCTGAACAACCC
____________________________________________________________
consensus TTCCGGCCCTCCCCCAACCCAGCGACAGAATATTACAACGGAATAGCATCTGAACAACCC
. : . : . : . : . : . :
JMFN014C20+ CAATT-CCGCCGCCCACGCCGCCATTATTGTTGGTGAAATCGCGGCGGAAAAACTCTCGG
JMFF026J17+ CAATT-CCGCCGCCCACGCCGCCATTATTGTTGGTGAAATCGCGGCGGAAAAACTCTCGG
JMFF008O03+ CAATTCCCGCCGCCCACGCCGCCATTATTGTTGGTGAAATCGCGGCGGAAAAACTCTCGG
JMFF017G08+ CCGCCGCCCACGCCGCCATTATTGTTGGTGAAATCGCGGCGGAAAAACTCTCGG
____________________________________________________________
consensus CAATT-CCGCCGCCCACGCCGCCATTATTGTTGGTGAAATCGCGGCGGAAAAACTCTCGG
. : . : . : . : . : . :
JMFN014C20+ ACGGGATCGCAATTGTAGATACGGAATCCTCGATCGGTGCCAGCAGCGAAACAGCTGTGG
JMFF026J17+ ACGGGATCGCAATTGTAGATACGGAATCCTCGATCGGTGCCAGCAGCGAAACAGCTGTGG
JMFF008O03+ ACGGGATCGCAATTGTAGATACGGAATCCTCGATCGGTGCCAGCAGCGAAACAGCTGTGG
JMFF017G08+ ACGGGATCGCAATTGTAGATACGGAATCCTCGATCGGTGCCAGCAGCGAAACAGCTGTGG
____________________________________________________________
consensus ACGGGATCGCAATTGTAGATACGGAATCCTCGATCGGTGCCAGCAGCGAAACAGCTGTGG
. : . : . : . : . : . :
JMFN014C20+ TCCTGGTTGAAGGAGAGGTGGAGGAGGGTAGGGCGAGAGGAGTCCACGATTTGAGGAACC
JMFF026J17+ TCCTGGTTGAAGGAGAGGTGGAGGAGGGTAGGGCGAGAGGAGTCCACGATTTGAGGAACC
JMFF008O03+ TCCTGGTTGAAGGAGAGGTGGAGGAGGGTAGGGCGAGAGGAGTCCACGATTTGAGGAACC
JMFF017G08+ TCCTGGTTGAAGGAGAGGTGGAGGAGGGTAGGGCGAGAGGAGTCCACGATTTGAGGAACC
____________________________________________________________
consensus TCCTGGTTGAAGGAGAGGTGGAGGAGGGTAGGGCGAGAGGAGTCCACGATTTGAGGAACC
. : . : . : . : . : . :
JMFN014C20+ GGATTAGGGTTAACATTCTGCGAAGTAGTGGTGGGGGAAGAAGTTTGAGAGCGGGGGTTA
JMFF026J17+ GGATTAGGGTTAACATTCTGCGAAGTAGTGGTGGGGGAAGAAGTTTGAGAGCGGGGGTTA
JMFF008O03+ GGATTAGTGTTAACATTCTGCGAAGTAGTGGTGGGGGAAGAAGTTTGAGAGCGGGGGTTA
JMFF017G08+ GGATTAGGGTTAACATTCTGCGAAGTAGTGGTGGGGGAAGAAGTTTGAGAGCGGGGGTTA
____________________________________________________________
consensus GGATTAGGGTTAACATTCTGCGAAGTAGTGGTGGGGGAAGAAGTTTGAGAGCGGGGGTTA
. : . : . : . : . : . :
JMFN014C20+ TCGTCGTCCGCAGGAGCCGGGGAGACAACAGCGGAGATACCGGAGAGGTCGGAGAGAAAG
JMFF026J17+ TCGTCGTCCGCAGGAGCCGGGGAGACAACAGCGGAGATACCGGAGAGGTCGGAGAGAGAG
JMFF008O03+ TCGTCGTCCGCAGGAGCCGGGGAGACAACAGCGGAGATACCGGAGAGGTCGGAGAGAGAG
JMFF017G08+ TCGTCGTCCGCAGGAGCCGGGGAGACAACAGCGGAGATACCGGAGAGGTCGGAGAGAGAG
____________________________________________________________
consensus TCGTCGTCCGCAGGAGCCGGGGAGACAACAGCGGAGATACCGGAGAGGTCGGAGAGAGAG
. : . : . : . : . : . :
JMFN014C20+ GAGTGATCGTCGGCGTCTAAGGGCTGAGACGGAGGAGAATTGTCGTCCATGAAGATCGGT
JMFF026J17+ GAGTGATCGTCGGCGTCTAAGGGCTGAGACGGAGGAGAATTGTCGTCCATGAAGATCGGT
JMFF008O03+ GAGTGATCGTCGGCGTCTAAGGGCTGAGACGGAGGAGAATTGTCGTCCATGAAGATCGGT
JMFF017G08+ GAGTGATCGTCGGCGTCTAAGGGCTGAGACGGAGGAGAATTGTCGTCCATGAAGATCGGT
____________________________________________________________
consensus GAGTGATCGTCGGCGTCTAAGGGCTGAGACGGAGGAGAATTGTCGTCCATGAAGATCGGT
. : . : . : . : . : . :
JMFN014C20+ GACGGGAGGCGGCGATTGGGGCTGGGACTTGCTGGGTTAGGGGGCCAAGGAGAGGAGGAG
JMFF026J17+ GACGGGAGGCGGCGATTGGGGCTGGGACTTGCAGGGTTAGGGGGCCAAGGAGAGGAGGAG
JMFF008O03+ GACGGGAGGCGGCGATTGGGGCTGGGACTTGCAGGGTTAGGGGGCCAAGGAGAGGAGGAG
JMFF017G08+ GACGGGAGGCGGCGATTGGGGCTGGGACTTGCAGGGTTAGGGGGCCAAGGAGAGGAGGAG
____________________________________________________________
consensus GACGGGAGGCGGCGATTGGGGCTGGGACTTGCAGGGTTAGGGGGCCAAGGAGAGGAGGAG
. : . : . : . : . : . :
JMFN014C20+ GGTAGAGTTGAGGTCATCGGAAGGAGGAACGGCGGCGGAATACGGCGGAGGAAAGAGGGG
JMFF026J17+ GGTAGAGTTGAGGTCATCGGAAGGAGGAACGGCGGCGGAATACGGCGGAGGAAAGAGGGG
JMFF008O03+ GGTAGAGTTGAGGTCATCGGAAGGAGGAACGGCGGCGGAATACGGCGGAGGAAAGAGGGG
JMFF017G08+ GGTAGAGTTGAGGTCATCGGAAGGAGGAACGGCGGCGGAATACGGCGGAGGAAAGAGGGG
____________________________________________________________
consensus GGTAGAGTTGAGGTCATCGGAAGGAGGAACGGCGGCGGAATACGGCGGAGGAAAGAGGGG
. : . : . : . : . : . :
JMFN014C20+ AATTGC
JMFF026J17+ AATTGCGTACAAGC
JMFF008O03+ AATTGCGTACAAGCGGTGGCAAGGGACAGAGGGTAAT
JMFF017G08+ AATTGCGTACAAGCGGTGGCAAGGGACAGAGGGTAATAAACTATAAATATTTGGGATTTT
____________________________________________________________
consensus AATTGCGTACAAGCGGTGGCAAGGGACAGAGGGTAATAAACTATAAATATTTGGGATTTT