Contig 005939:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF034I09+                                                           TCCGGCGAGGAG
                      ____________________________________________________________
consensus                                                             TCCGGCGAGGAG
 
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JMSF034I09+           GTGGAATCCAGTACGGTGACGAGCACCGGAACGACTCCCTGCGCCACCGCAATCAACACG
                      ____________________________________________________________
consensus             GTGGAATCCAGTACGGTGACGAGCACCGGAACGACTCCCTGCGCCACCGCAATCAACACG
 
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JMSF034I09+           TTCTTATCGTCTCCCTGCAACAGCCCTAGGAGCGAGTCGAGCACCGAGTTCTTCGACTCA
JMFF016A04+                          TGCAACAGCCNTAGGAGCGAGTCGAGCACCGAGTTCTTCGACTCA
                      ____________________________________________________________
consensus             TTCTTATCGTCTCCCTGCAACAGCCCTAGGAGCGAGTCGAGCACCGAGTTCTTCGACTCA
 
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JMSF034I09+           GTGGTCCCGATCTGGAGCCGAGTGATCAGATTCCTCGTCTCCGCCCTAATCGTCTCCCTC
JMFF016A04+           GTGGTCCCGATCTGGAGCCGAGTGATCAGATTCCTCGTCTCCGCCCTAATCGTCTCCCTC
                      ____________________________________________________________
consensus             GTGGTCCCGATCTGGAGCCGAGTGATCAGATTCCTCGTCTCCGCCCTAATCGTCTCCCTC
 
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JMSF034I09+           TTCGAATAACTACTACTCGACGAAACGGCGCCGTTCTCGCAGAGAACCCCGCTCTTGATA
JMFF016A04+           TTCGAATAACTACTACTCGACGAAACGGCGCCGTTCTCGCAGAGAACCCCGCTCTTGATA
                      ____________________________________________________________
consensus             TTCGAATAACTACTACTCGACGAAACGGCGCCGTTCTCGCAGAGAACCCCGCTCTTGATA
 
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JMSF034I09+           AGAACCTCCAGGTCTCTGCTAAGGCTATCGATTTTCGCGGCCAAGGAGTCGATGTCGTTC
JMFF016A04+           AGAACCTCCAGGTCTCTGCTAAGGCTATCGATTTTC--GGCCAAGGAGTCGATGTCGTTC
                      ____________________________________________________________
consensus             AGAACCTCCAGGTCTCTGCTAAGGCTATCGATTTTCGCGGCCAAGGAGTCGATGTCGTTC
 
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JMSF034I09+           TGCGTCTTGAGCTTCCCGCCGGGAGGGTTAGGGTTGTGGCAGCAAGCCGAGAGAGATACC
JMFF016A04+           TGCGTCTTGAGCTTCCCGCCGGGAGGGTTAGGGTTGTGGCAGCAAGCCGAGAGAGATACC
                      ____________________________________________________________
consensus             TGCGTCTTGAGCTTCCCGCCGGGAGGGTTAGGGTTGTGGCAGCAAGCCGAGAGAGATACC
 
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JMSF034I09+           CCGTCGGAGAGCGCGGCGGAGAGTGACCGGAGAAGGTCCGCCGAGAGAGCGTTGTCATTG
JMFF016A04+           CCGTCGGAGAGCGCGGCGGAGAGTGACCGGAGAAGGTCCGCCGAGAGAGCGTTGTCATTG
                      ____________________________________________________________
consensus             CCGTCGGAGAGCGCGGCGGAGAGTGACCGGAGAAGGTCCGCCGAGAGAGCGTTGTCATTG
 
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JMSF034I09+           GCCGCGGATGAGAGCTCAGAGAGGTGAGTCTGAAGCGCCGAGAGCTTCGTTCTCATCAGA
JMFF016A04+           GCCGCGGATGAGAGCTCAGAGAGGTGAGTCTGAAGCGCCGAGAGCTTCGTTCTCATCAGA
                      ____________________________________________________________
consensus             GCCGCGGATGAGAGCTCAGAGAGGTGAGTCTGAAGCGCCGAGAGCTTCGTTCTCATCAGA
 
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JMSF034I09+           GACCATTTTCCCTTGAAGCTTTGGGTTTCAGTAATGGAATCAAGGAGGGACAGTAGTACT
JMFF016A04+           GACCATTTTCCCTTGAAGCTTTGGGTTTCAGTAATGGAATCAAGGAGGGACAGTAGTACT
                      ____________________________________________________________
consensus             GACCATTTTCCCTTGAAGCTTTGGGTTTCAGTAATGGAATCAAGGAGGGACAGTAGTACT
 
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JMSF034I09+           TCGGTGCTTGATAGAACGAGATCAACGGGCTCTTTGAGGTTCTTCTCTGATACTTTCATG
JMFF016A04+           TCGGTGCTTGATAGAACGAGATCAACGGGCTCTTTGAGGTTCTTCTCTGATACTTTCATG
                      ____________________________________________________________
consensus             TCGGTGCTTGATAGAACGAGATCAACGGGCTCTTTGAGGTTCTTCTCTGATACTTTCATG
 
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JMSF034I09+           GCGACTTTCAGAGAGAGAACAGAAAGTAGAGAGAGAAAGGAACGT               
JMFF016A04+           GCGACTTTCAGAGAGAGAACAGAAAGTAGAGAGAGAAAGGAACGTATTGATGAAGGCAAT
                      ____________________________________________________________
consensus             GCGACTTTCAGAGAGAGAACAGAAAGTAGAGAGAGAAAGGAACGTATTGATGAAGGCAAT