Contig 005936:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001A04Sequence383005936 (6)
JMFF015B18Sequence534005936 (6)ref|XP_009604024.1|116PREDICTED: uncharacterized protein LOC104098884 [Nicotiana tomentosiformis]595005936 (6)ref|XP_006344000.1|84.0PREDICTED: uncharacterized protein LOC102605156 [Solanum tuberosum]
JMFF016A05Sequence403005936 (6)ref|XP_009604024.1|104PREDICTED: uncharacterized protein LOC104098884 [Nicotiana tomentosiformis]
JMFN029N19Sequence628005936 (6)ref|XP_006344000.1|140PREDICTED: uncharacterized protein LOC102605156 [Solanum tuberosum]
JMFS002G06Sequence543005936 (6)ref|XP_006344000.1|129PREDICTED: uncharacterized protein LOC102605156 [Solanum tuberosum]

Alignment

This contig is upended


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rJMCP001A04+                                                           CACTCTGCAGA
                      ____________________________________________________________
consensus                                                              CACTCTGCAGA
 
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rJMCP001A04+          TTTGCTTTTCCTGAAGTTGAAGCCAGACCAACAACTGGTTAAAAAGCCTTCCCTCCTGTG
rJMFF015B18-                                 CAGACCAACNACTGGTTAAAAAGCCTTTCCTCCTGTG
                      ____________________________________________________________
consensus             TTTGCTTTTCCTGAAGTTGAAGCCAGACCAACAACTGGTTAAAAAGCCTTTCCTCCTGTG
 
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rJMCP001A04+          GGGTGTGGTGGTGCTATTGCTGCTACTTGTGGTGCTGCCATCACTGCTGCCACTGATATT
rJMFF015B18-          GGGTGTGGTGGTGCTATTGCTGCTACTTGTGGTGCTGCCATCACTGCTGCCACTGATATT
                      ____________________________________________________________
consensus             GGGTGTGGTGGTGCTATTGCTGCTACTTGTGGTGCTGCCATCACTGCTGCCACTGATATT
 
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rJMCP001A04+          GCTGCTATCACTCTCTCTGGAACCCCATGATCTCTTCTTCTTCCACCACTCTTTATCCAC
rJMFF015B18-          GCTGCTATCACTCTCTCTGGAACCCCATGATCTCTTCTTCTTCCACCACTCTTTATCCAC
                      ____________________________________________________________
consensus             GCTGCTATCACTCTCTCTGGAACCCCATGATCTCTTCTTCTTCCACCACTCTTTATCCAC
 
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rJMCP001A04+          ACTACTCTTGCTGGATTTCTCAGATCCCTCTACTGCTGGCTTAGGAGAAACCTTTGCCAA
rJMFF015B18-          ACTACTCTTGCTGGATTTCTCANATCCCTCTACTGCTGGCTTAAGAGAAACCTTTGCCAA
JMFN029N19+                                                                TTGCCAA
                      ____________________________________________________________
consensus             ACTACTCTTGCTGGATTTCTCAGATCCCTCTACTGCTGGCTTAGGAGAAACCTTTGCCAA
 
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rJMCP001A04+          TGTCTTACTCCCTGAAGATGAAGATGGGTTCTTTTTCTTGTTTGATCCCCCCAGACCCAG
rJMFF015B18-          TGTCTTACTCCCTGAANATGAAGATGGGTTCTTCTTCTTGTTTGATCCCCCCANACCCAG
JMFN029N19+           TGTCTTACTCCCTGAAGATGAAGATGGGTTCTTTTTCTTGTTTGATCCCCCCAGACCCAG
                      ____________________________________________________________
consensus             TGTCTTACTCCCTGAAGATGAAGATGGGTTCTTTTTCTTGTTTGATCCCCCCAGACCCAG
 
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rJMCP001A04+          TGAGATCGGAAACACCAACTTCAGAAACATCCCTCTGTTCTCCATGCTCCCACTTCTTCC
rJMFF015B18-          NGAGATCGGAAACACCAACTTCAGAAACATCCCTCTGTTCTCCATGCTCCCACTTCTTCC
JMFN029N19+           TGAGATCGGAAACACCAACTTCAGAAACATCCCTCTGTTCTCCATGCTCCCACTTCTTCC
JMFS002G06+                              TTCAGAAACATCCCTCTGTTCTCCATGCTCCCACTTCTTCC
                      ____________________________________________________________
consensus             TGAGATCGGAAACACCAACTTCAGAAACATCCCTCTGTTCTCCATGCTCCCACTTCTTCC
 
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rJMCP001A04+          CATCTTCCCTG                                                 
rJMFF015B18-          CATCTTCCCTGNACTCTTCTTGATACTCTCTTGCCTCTTCACTCTCTCTGCACCACCACC
JMFN029N19+           CATCTTCCCTGTACTCTTCTTGATACTCTCTTGCCTCTTCACTCTCTCTGCACCACCACC
JMFS002G06+           CATCTTCCCTGTACTCTTCTTGATACTCTCTTGCCTCTTCACTCTCTNTGCACCACCACC
JMFF015B18+                 CCCTGTACTCTTCTTGATACTCTCTTGCCTCTTCACTCTCTCTGCACCACCACC
                      ____________________________________________________________
consensus             CATCTTCCCTGTACTCTTCTTGATACTCTCTTGCCTCTTCACTCTCTCTGCACCACCACC
 
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rJMFF015B18-          ATAGTCTTTCATCAAGCATTCTTCTTGGGTTTCTACTACTACTCTAGCAGGCTGTTCCAC
JMFN029N19+           ATAGTCTTTCATCAAGCATTCTTCTTGGGTTTCTACTACTACTCTAGCAGGCTGTTCCAC
JMFS002G06+           ATAGTCTTTCATCAAGCATTCTTCTTGGGTTTCTACTACTACTCTAGCAGGCTGTTCCAC
JMFF016A05+                                                              CTGTTCCAC
JMFF015B18+           ATAGTCTTTCATCAAGCATTCTTCTTGGGTTTCTACTACTACTCTAGCAGGCTGTTCCAC
                      ____________________________________________________________
consensus             ATAGTCTTTCATCAAGCATTCTTCTTGGGTTTCTACTACTACTCTAGCAGGCTGTTCCAC
 
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rJMFF015B18-          AAGATCCTTCAAGGATAACTCGTAGCAAGACTCCGGCATGTTCTTCACCATCTCCATCAG
JMFN029N19+           AAGATCCTTCAAGGATAACTCGTAGCAAGACTCCGGCATGTTCTTCACCATCTCCATCAG
JMFS002G06+           AAGATCCTTCAAGGATAACTCGTAGCAAGACTCCGGCATGTTCTTCACCATCTCCATCAG
JMFF016A05+           AAGATCCTTCAAGGATAACTCGTAGCAAGACTCCGGCATGTTCTTCACCATCTCCATCAG
JMFF015B18+           AAGATCCTTCAAGGATAACTCGTAGCAAGACTCCGGCATGTTCTTCACCATCTCCATCAG
                      ____________________________________________________________
consensus             AAGATCCTTCAAGGATAACTCGTAGCAAGACTCCGGCATGTTCTTCACCATCTCCATCAG
 
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rJMFF015B18-          CTCCCACTGCCCTCTAGNAATGGCCTCANCTCTGCTATGGTGGTGGCGAAGGCGGGCATG
JMFN029N19+           CTCCCACTGCCCTCTAGCAATGGCCTCAGCTCTGCTATGGTGGTGGCGAAGGCGGGCAGG
JMFS002G06+           CTCCCACTGCCCTCTAGCAATGGCCTCAGCTCTGCTATGGTGGTGGCGAAGGCGGGCAGG
JMFF016A05+           CTCCCACTGCCCTNTAGCAATGGCCTCAGCTCTGCTATGGTGGTGGCGAAGGCGGGCAGG
JMFF015B18+           CTCCCACTGCCCTCTAGCAATGGCCTCAGCTCTGCTATGGTGGTGGCGAAGGCGGGCAGG
                      ____________________________________________________________
consensus             CTCCCACTGCCCTCTAGCAATGGCCTCAGCTCTGCTATGGTGGTGGCGAAGGCGGGCAGG
 
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rJMFF015B18-          ACTGTTCTGCCGCCACAA                                          
JMFN029N19+           ACTGTTCTGCCGCCACAAGGGAGGTGAAGAAACACCAGACTGGTGGTCATCATCAGGCCT
JMFS002G06+           ACTGTTCTGCCGCCACAAGGGAGGTGAAGAAACACCAGACTGGTGGTCATCATCAGGCCT
JMFF016A05+           ACTGTTCTGCCGCCACAAGGGAGGTGAAGAAACACCAGACTGGTGGTCATCATCAGGCCT
JMFF015B18+           ACTGTTCTGCCGCCACAAGGGAGGTGAAGAAACACCAGACTGGTGGTCATCATCAGGCCT
                      ____________________________________________________________
consensus             ACTGTTCTGCCGCCACAAGGGAGGTGAAGAAACACCAGACTGGTGGTCATCATCAGGCCT
 
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JMFN029N19+           GAATTGGATCCCTCTGTAGTGGTGGTGTTCATGGTTCTTTGATGGGTGATTGGCGTTGGT
JMFS002G06+           GAATTGGATCCCTCTGTAGTGGTGGTGTTCATGGTTCTTTGATGGGTGATTGGCGTTGGT
JMFF016A05+           GAATTGGATCCCTCTGTAGTGGTGGTGTTCATGGTTCTTTGATGGGTGATTGGCGTTGGT
JMFF015B18+           GAATTGGATCCCTCTGTAGTGGTGGTGTTCATGGTTCTTTGATGGGTGATTGGCGTTGGT
                      ____________________________________________________________
consensus             GAATTGGATCCCTCTGTAGTGGTGGTGTTCATGGTTCTTTGATGGGTGATTGGCGTTGGT
 
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JMFN029N19+           GACAAAATTCAGGGGCTCCCACCCATCAAAGCTGTAATCATGGTCTCTGCTGGTGACTGG
JMFS002G06+           GACAAAATTCAGGGGCTCCCACCCATCAAAGCTGTAATCATGGTCTCTGCTGGTGACTGG
JMFF016A05+           GACAAAATTCAGGGGCTCCCACCCATCAAAGCTGTAATCATGGTCTCTGCTGGTGACTGG
JMFF015B18+           GACAAAATTCAGGGGCTCCCACCCATCAAAGCTGTAATCATGGTCTCTGCTGGTGACTGG
                      ____________________________________________________________
consensus             GACAAAATTCAGGGGCTCCCACCCATCAAAGCTGTAATCATGGTCTCTGCTGGTGACTGG
 
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JMFN029N19+           ATCAAGAATATGGACATGATCGTTTGGGGGAGAAAGCATGGTTTTTGGGAGGAGATTGGG
JMFS002G06+           ATCAAGAATATGGACATGATCGTTTGGGGGAGAAAGCATGGTTTTTGGGAGGAGATTGGG
JMFF016A05+           ATCAAGAATATGGACATGATCGTTTGGGGGAGAAAGCATGGTTTTTGGGAGGAGATTGGG
JMFF015B18+           ATCAAGAATATGGACATGATCGTTTGGGGGAGAAAGCATGGTTTTTGGGAGGAGATTGGG
                      ____________________________________________________________
consensus             ATCAAGAATATGGACATGATCGTTTGGGGGAGAAAGCATGGTTTTTGGGAGGAGATTGGG
 
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JMFN029N19+           GAAATGGTTGGGTTGT                                            
JMFS002G06+           GAAATGGTTGGGTTGT                                            
JMFF016A05+           GAAATGGTTGAGTTGTNTTGNGTTCTGTTGGTGT                          
JMFF015B18+           GAAATGGTTGAGTTGTGTTGTGTTGTGTTGGTGTGAGAAGATGAGAGGAGGAAGAGAATC
                      ____________________________________________________________
consensus             GAAATGGTTGGGTTGTGTTGTGTTGTGTTGGTGTGAGAAGATGAGAGGAGGAAGAGAATC