Contig 005935:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007P22Sequence587005935 (2)749001044 (2)ref|XP_011043641.1|3e-05PREDICTED: homeobox protein 2-like isoform X2 [Populus euphratica]
JMFF014P23Sequence523005935 (2)744001044 (2)ref|XP_011043641.1|2e-05PREDICTED: homeobox protein 2-like isoform X2 [Populus euphratica]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF007P22+ GAGTAGCCATTGTTGGGGTTATTGTAGTACTTGCCGTTGTCCTCGGG
                      ____________________________________________________________
consensus GAGTAGCCATTGTTGGGGTTATTGTAGTACTTGCCGTTGTCCTCGGG
 
. : . : . : . : . : . :
JMFF007P22+ GACGGTGTAGCCGTTGTGTTTGTCAAAATGCCTNTGAGAGTAGCCGCCGTTGTTGTTGAA
JMFF014P23+ GTTTGTCAAAATGCCTCTGAGAGTAGCCGCCGTTGTTGTTGAA
                      ____________________________________________________________
consensus GACGGTGTAGCCGTTGTGTTTGTCAAAATGCCTCTGAGAGTAGCCGCCGTTGTTGTTGAA
 
. : . : . : . : . : . :
JMFF007P22+ ATTGTAGTTGAAAGAATTCTCCGTCGTCCTGGACTCGCGGAATGTCTCGGTGGACGGATT
JMFF014P23+ ATTGTAGTTGAAAGAATTCTCCGTCGTCCTGGACTCGCGGAATGTCTCGGTGGACGGATT
                      ____________________________________________________________
consensus ATTGTAGTTGAAAGAATTCTCCGTCGTCCTGGACTCGCGGAATGTCTCGGTGGACGGATT
 
. : . : . : . : . : . :
JMFF007P22+ CTCCTTCGTCTGGAATCCATAAAGCCCGTACCCGGTGTCGCTTTCCATGGGCGACGGCGA
JMFF014P23+ CTCCTTCGTCTGGAATCCATAAAGCCCGTACCCGGTGTCGCTTTCCATGGGCGACGGCGA
                      ____________________________________________________________
consensus CTCCTTCGTCTGGAATCCATAAAGCCCGTACCCGGTGTCGCTTTCCATGGGCGACGGCGA
 
. : . : . : . : . : . :
JMFF007P22+ GACGTCGTCGGCGATGGCCGGCCCAGGCGCGGGTGCTGAGTCCACTGGAAAAGCAATTTC
JMFF014P23+ GACGTCGTCGGCGATGGCCGGCCCAGGCGCGGGTGCTGAGTCCACTGGAAAAGCAATTTC
                      ____________________________________________________________
consensus GACGTCGTCGGCGATGGCCGGCCCAGGCGCGGGTGCTGAGTCCACTGGAAAAGCAATTTC
 
. : . : . : . : . : . :
JMFF007P22+ CGGCGCTGAAACCGGAGCCGACACGGGTGGGGAAGGGAAACTAATGTCGCCAATGGCGGG
JMFF014P23+ CGGCGCTGAAACCGGAGCCGACACGGGTGGGGAAGGGAAACTAATGTCGCCAATGGCGGG
                      ____________________________________________________________
consensus CGGCGCTGAAACCGGAGCCGACACGGGTGGGGAAGGGAAACTAATGTCGCCAATGGCGGG
 
. : . : . : . : . : . :
JMFF007P22+ TCCGGGGGCTGAAGCCGGTGTTGACAACGATGCCGGCGGGAAGCTTATTTCGCTGGTGGT
JMFF014P23+ TCCGGGGGCTGAAGCCGGTGTTGACAACGATGCCGGCGGGAAGCTTATTTCGCTGGTGGT
                      ____________________________________________________________
consensus TCCGGGGGCTGAAGCCGGTGTTGACAACGATGCCGGCGGGAAGCTTATTTCGCTGGTGGT
 
. : . : . : . : . : . :
JMFF007P22+ AGGCGCCGGCGCCGGAGATGAAGTAATGGTGATGAATTGGCCGGGTCTAGTAGCTTCCGT
JMFF014P23+ AGGCGCCGGCGCCGGAGATGAAGTAATGGTGATGAATTGGCCGGGTCTAGTAGCTTCCGT
                      ____________________________________________________________
consensus AGGCGCCGGCGCCGGAGATGAAGTAATGGTGATGAATTGGCCGGGTCTAGTAGCTTCCGT
 
. : . : . : . : . : . :
JMFF007P22+ TTGGAACAAACAAGAAGTGACCGCCAAGACTAGAAAAGCAAAAGCTCCGGCGAGATTAGC
JMFF014P23+ TTGGAACAAACAAGAAGTGACCGCCAAGACTAGAAAAGCAAAAGCTCCGGCGAGATTAGC
                      ____________________________________________________________
consensus TTGGAACAAACAAGAAGTGACCGCCAAGACTAGAAAAGCAAAAGCTCCGGCGAGATTAGC
 
. : . : . : . : . : . :
JMFF007P22+ CATGGCGGAGAACAGAGTTGAAGCTAAGTGGCCGGAGAAAAGAGAAAACAATGGTGATTT
JMFF014P23+ CATGGCGGAGAACAGAGTTGAAGCTAAGTGGCCGGAGAAAAGAGAAAACAATGGTGATTT
                      ____________________________________________________________
consensus CATGGCGGAGAACAGAGTTGAAGCTAAGTGGCCGGAGAAAAGAGAAAACAATGGTGATTT