Contig 005935:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007P22Sequence587005935 (2)749001044 (2)ref|XP_011043641.1|3e-05PREDICTED: homeobox protein 2-like isoform X2 [Populus euphratica]
JMFF014P23Sequence523005935 (2)744001044 (2)ref|XP_011043641.1|2e-05PREDICTED: homeobox protein 2-like isoform X2 [Populus euphratica]

Alignment

This contig is upended


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JMFF007P22+                        GAGTAGCCATTGTTGGGGTTATTGTAGTACTTGCCGTTGTCCTCGGG
                      ____________________________________________________________
consensus                          GAGTAGCCATTGTTGGGGTTATTGTAGTACTTGCCGTTGTCCTCGGG
 
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JMFF007P22+           GACGGTGTAGCCGTTGTGTTTGTCAAAATGCCTNTGAGAGTAGCCGCCGTTGTTGTTGAA
JMFF014P23+                            GTTTGTCAAAATGCCTCTGAGAGTAGCCGCCGTTGTTGTTGAA
                      ____________________________________________________________
consensus             GACGGTGTAGCCGTTGTGTTTGTCAAAATGCCTCTGAGAGTAGCCGCCGTTGTTGTTGAA
 
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JMFF007P22+           ATTGTAGTTGAAAGAATTCTCCGTCGTCCTGGACTCGCGGAATGTCTCGGTGGACGGATT
JMFF014P23+           ATTGTAGTTGAAAGAATTCTCCGTCGTCCTGGACTCGCGGAATGTCTCGGTGGACGGATT
                      ____________________________________________________________
consensus             ATTGTAGTTGAAAGAATTCTCCGTCGTCCTGGACTCGCGGAATGTCTCGGTGGACGGATT
 
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JMFF007P22+           CTCCTTCGTCTGGAATCCATAAAGCCCGTACCCGGTGTCGCTTTCCATGGGCGACGGCGA
JMFF014P23+           CTCCTTCGTCTGGAATCCATAAAGCCCGTACCCGGTGTCGCTTTCCATGGGCGACGGCGA
                      ____________________________________________________________
consensus             CTCCTTCGTCTGGAATCCATAAAGCCCGTACCCGGTGTCGCTTTCCATGGGCGACGGCGA
 
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JMFF007P22+           GACGTCGTCGGCGATGGCCGGCCCAGGCGCGGGTGCTGAGTCCACTGGAAAAGCAATTTC
JMFF014P23+           GACGTCGTCGGCGATGGCCGGCCCAGGCGCGGGTGCTGAGTCCACTGGAAAAGCAATTTC
                      ____________________________________________________________
consensus             GACGTCGTCGGCGATGGCCGGCCCAGGCGCGGGTGCTGAGTCCACTGGAAAAGCAATTTC
 
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JMFF007P22+           CGGCGCTGAAACCGGAGCCGACACGGGTGGGGAAGGGAAACTAATGTCGCCAATGGCGGG
JMFF014P23+           CGGCGCTGAAACCGGAGCCGACACGGGTGGGGAAGGGAAACTAATGTCGCCAATGGCGGG
                      ____________________________________________________________
consensus             CGGCGCTGAAACCGGAGCCGACACGGGTGGGGAAGGGAAACTAATGTCGCCAATGGCGGG
 
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JMFF007P22+           TCCGGGGGCTGAAGCCGGTGTTGACAACGATGCCGGCGGGAAGCTTATTTCGCTGGTGGT
JMFF014P23+           TCCGGGGGCTGAAGCCGGTGTTGACAACGATGCCGGCGGGAAGCTTATTTCGCTGGTGGT
                      ____________________________________________________________
consensus             TCCGGGGGCTGAAGCCGGTGTTGACAACGATGCCGGCGGGAAGCTTATTTCGCTGGTGGT
 
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JMFF007P22+           AGGCGCCGGCGCCGGAGATGAAGTAATGGTGATGAATTGGCCGGGTCTAGTAGCTTCCGT
JMFF014P23+           AGGCGCCGGCGCCGGAGATGAAGTAATGGTGATGAATTGGCCGGGTCTAGTAGCTTCCGT
                      ____________________________________________________________
consensus             AGGCGCCGGCGCCGGAGATGAAGTAATGGTGATGAATTGGCCGGGTCTAGTAGCTTCCGT
 
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JMFF007P22+           TTGGAACAAACAAGAAGTGACCGCCAAGACTAGAAAAGCAAAAGCTCCGGCGAGATTAGC
JMFF014P23+           TTGGAACAAACAAGAAGTGACCGCCAAGACTAGAAAAGCAAAAGCTCCGGCGAGATTAGC
                      ____________________________________________________________
consensus             TTGGAACAAACAAGAAGTGACCGCCAAGACTAGAAAAGCAAAAGCTCCGGCGAGATTAGC
 
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JMFF007P22+           CATGGCGGAGAACAGAGTTGAAGCTAAGTGGCCGGAGAAAAGAGAAAACAATGGTGATTT
JMFF014P23+           CATGGCGGAGAACAGAGTTGAAGCTAAGTGGCCGGAGAAAAGAGAAAACAATGGTGATTT
                      ____________________________________________________________
consensus             CATGGCGGAGAACAGAGTTGAAGCTAAGTGGCCGGAGAAAAGAGAAAACAATGGTGATTT