Contig 005922:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012B15Sequence538005922 (4)gb|KHG07223.1|2e-42Cytochrome c-type biogenesis CcmH [Gossypium arboreum]678005922 (4)ref|XP_006343085.1|2e-76PREDICTED: uncharacterized protein LOC102593427 isoform X1 [Solanum tuberosum]
JMFF012B16Sequence571005922 (4)ref|XP_007024200.1|2e-48Cytochrome c biogenesis protein family [Theobroma cacao] gb|EOY26822.1| Cytochro618005922 (4)ref|XP_004149299.1|3e-75PREDICTED: cytochrome c-type biogenesis protein CcmH-like [Cucumis sativus] ref

Alignment

This contig is upended


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rJMFF012B16-                                                                   ATT
rJMFF012B15-                                                   GCATTGCCAAGCTGTAATT
                      ____________________________________________________________
consensus                                                      GCATTGCCAAGCTGTAATT
 
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rJMFF012B16-          CTTGTATGATTACNAAGCACGATCACTTATTAGGGAATAATTATACAGGTTGCATTTACT
rJMFF012B15-          CTTGTATGATTACAAAGCACGATCACTTATTAGGGAATAATTATACAGGTTGCATTTACT
                      ____________________________________________________________
consensus             CTTGTATGATTACAAAGCACGATCACTTATTAGGGAATAATTATACAGGTTGCATTTACT
 
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rJMFF012B16-          ATTCAAAAAAAAACTGAGATTTGGACATTTCTCTTCTCTAATGTTTCACTGACNAAGCAA
rJMFF012B15-          ATTCAAAAAAAAACTGAGATTTGGACATTTCTCTTCTCTAATGTTTCACTGACGAAGCAA
                      ____________________________________________________________
consensus             ATTCAAAAAAAAACTGAGATTTGGACATTTCTCTTCTCTAATGTTTCACTGACGAAGCAA
 
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rJMFF012B16-          TCTTTGCAACCAATATGAAGGAGAATATTGAGAAGGAGGTGGAGTAAGGAGATTTAGCAT
rJMFF012B15-          TCTTTGCAACCAATATGAAGGAGAATATTGAGAAGGAGGTGGAGTAAGGAGATTTAGCAT
                      ____________________________________________________________
consensus             TCTTTGCAACCAATATGAAGGAGAATATTGAGAAGGAGGTGGAGTAAGGAGATTTAGCAT
 
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rJMFF012B16-          GGTCTCTCTCTCCTTTGGGGTTAATGGGACTCCCCTGATGAGATTCAAAGTCAGAACGTG
rJMFF012B15-          GGTCTCTCTCTCCTTTGGGGTTAATGGGACTCCCCTGATGAGATTCAAAGTCAGAACGTG
                      ____________________________________________________________
consensus             GGTCTCTCTCTCCTTTGGGGTTAATGGGACTCCCCTGATGAGATTCAAAGTCAGAACGTG
 
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rJMFF012B16-          GACGTTAGACCTTCGCCTGTGCTTTTGGTAAGCCCAAATAGCTGCAGCGCCACCAGCAAC
rJMFF012B15-          GACGTTAGACCTTCGCCTGTGCTTTTGGTAAGCCCAAATAGCTGCAGCGCCACCAGCAAC
JMFF012B16+                                        AAGCCCAAATAGCTGCAGCGCCACCAGCAAC
                      ____________________________________________________________
consensus             GACGTTAGACCTTCGCCTGTGCTTTTGGTAAGCCCAAATAGCTGCAGCGCCACCAGCAAC
 
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rJMFF012B16-          CATAAGCGGAGATAGCCACAAAGCAGCTGTCTGCAGATCAAATTTTGGTCTGTAAAGCAC
rJMFF012B15-          CATAAGCGGAGATAGCCACAAAGCAGCTGTCTGCAGATCAAATTTTGGTCTGTAAAGCAC
JMFF012B15+             TAAGCGGAGATAGCCACAAAGCAGCTGTCTGCAGATCAAATTTTGGTCTGTAAAGCAC
JMFF012B16+           CATAAGCGGAGATAGCCACAAAGCAGCTGTCTGCAGATCAAATTTTGGTCTGTAAAGCAC
                      ____________________________________________________________
consensus             CATAAGCGGAGATAGCCACAAAGCAGCTGTCTGCAGATCAAATTTTGGTCTGTAAAGCAC
 
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rJMFF012B16-          TGTCTCACCATAATCATCCTCCAGTTTCTTGTANATCTCTTTGTCACTTTTTCCCTCTCG
rJMFF012B15-          TGTCTCACCATAATCATCCTCCAGTTTCTTGTAGATCTCTTTGTCACTTTTTCCCTCTCG
JMFF012B15+           TGTCTCACCATAATCATCCTCCAGTTTCTTGTAGATCTCTTTGTCACTTTTTCCCTCTCG
JMFF012B16+           TGTCTCACCATAATCATCCTCCAGTTTCTTGTAGATCTCTTTGTCACTTTTTCCCTCTCG
                      ____________________________________________________________
consensus             TGTCTCACCATAATCATCCTCCAGTTTCTTGTAGATCTCTTTGTCACTTTTTCCCTCTCG
 
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rJMFF012B16-          AATCTCATCTCGGATCAACTTCCTTAGGANAATGGCAATGTCAGCTTGAGATTCTTCAAT
rJMFF012B15-          AATCTCATCTCGGATCAACTTCCTTAGGAGAATGGCAATGTCAGCTTGAGATTCTTCAAT
JMFF012B15+           AATCTCATCTCGGATCAACTTCCTTAGGAGAATGGCAATGTCAGCTTGAGATTCTTCAAT
JMFF012B16+           AATCTCATCTCGGATCAACTTCCTTAGGAGAATGGCAATGTCAGCTTGAGATTCTTCAAT
                      ____________________________________________________________
consensus             AATCTCATCTCGGATCAACTTCCTTAGGAGAATGGCAATGTCAGCTTGAGATTCTTCAAT
 
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rJMFF012B16-          GGACTGACTGCCACACTCTGTGCACCTGACGTTATGACTGATGTTTCTTGCTCTCGCCTC
rJMFF012B15-          GGACTGACTGCCACACTCTGTGCACCTGACGTTATGACTGATGTTTCTTGCTCTCGCCTC
JMFF012B15+           GGACTGACTGCCACACTCTGTGCACCTGACGTTATGACTGATGTTTCTTGCTCTCGCCTC
JMFF012B16+           GGACTGACTGCCACACTCTGTGCACCTGACGTTATGACTGATGTTTCTTGCTCTCGCCTC
                      ____________________________________________________________
consensus             GGACTGACTGCCACACTCTGTGCACCTGACGTTATGACTGATGTTTCTTGCTCTCGCCTC
 
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rJMFF012B16-          CACCACCCGCTCCTCCCTCAATGCATCCTCTTTGTCCTCCATCGTGCTTGCAAAATTTCA
rJMFF012B15-          CACCACCCGCTCCTCCCTCACTGCATCCTCTTTGTCCTCCATCGTGCTTGCAAAATTTCA
JMFF012B15+           CACCACCCGCTCCTCCCTCACTGCATCCTCTTTGTCCTCCATCGTGCTTGCAAAATTTCA
JMFF012B16+           CACCACCCGCTCCTCCCTCACTGCATCCTCTTTGTCCTCCATCGTGCTTGCAAAATTTCA
                      ____________________________________________________________
consensus             CACCACCCGCTCCTCCCTCACTGCATCCTCTTTGTCCTCCATCGTGCTTGCAAAATTTCA
 
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rJMFF012B16-          ATCACTTACCACCGC                                             
rJMFF012B15-          ATCACTTACCACCGCACAAACTAACAGAGACGCAGAGGCTGGAACACATGGAACGTCCT 
JMFF012B15+           ATCACTTACCACCGCACAAACTAACAGAGACGCAGAGGCTGGAACACATGGAACGTCCTA
JMFF012B16+           ATCACTTACCACCGCACAAACTAACAGAGACGCAGAGGCTGGAACACATGGAACGTCCTA
                      ____________________________________________________________
consensus             ATCACTTACCACCGCACAAACTAACAGAGACGCAGAGGCTGGAACACATGGAACGTCCTA
 
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JMFF012B15+           GATTCGCAGGGGAGGGAGGGAGGCAGCGACCGCAGCGTCGTCGGCCTAACCTTCTTCGTC
JMFF012B16+           GATTCGCAGGGGAGGGAGGGAGGCAGCGACCGCAGCGTCGTCGGCCTAACCTTCTTCGTC
                      ____________________________________________________________
consensus             GATTCGCAGGGGAGGGAGGGAGGCAGCGACCGCAGCGTCGTCGGCCTAACCTTCTTCGTC
 
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JMFF012B15+           TTCTGCTTGCTTCGTCGCAGATTCGCAGGGTAGGGCGGGAGGCGGCGGCGTCCGCTGATA
JMFF012B16+           TTCTGCTTGCTTCGTCGCAGATTCGCAGGGTAGGGCGGGAGGCGGCGGCGTCCGCTGATA
                      ____________________________________________________________
consensus             TTCTGCTTGCTTCGTCGCAGATTCGCAGGGTAGGGCGGGAGGCGGCGGCGTCCGCTGATA
 
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JMFF012B15+           CTAGCTCCGTCGTCGGCCTTGGCTATGTTAGGATTTAGGAAATTCGGAATAGGGATTTTC
JMFF012B16+           CTAGCTCCGTCGTCGGCCTTGGCTATGTTAGGATTTAGGAAATTCGGAATAGGGATTTTC
                      ____________________________________________________________
consensus             CTAGCTCCGTCGTCGGCCTTGGCTATGTTAGGATTTAGGAAATTCGGAATAGGGATTTTC