Contig 005917:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011A03Sequence522005917 (2)ref|XP_004238077.1|3e-49PREDICTED: RNA-binding protein 1 [Solanum lycopersicum]806005917 (2)ref|XP_009800333.1|2e-59PREDICTED: RNA-binding protein 1 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF011A03-                                                     CAATAATAGCAACATAT
                      ____________________________________________________________
consensus                                                        CAATAATAGCAACATAT
 
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rJMFF011A03-          CCTCAATCAGAAAAGTTACTAATCTATCACTGTATCTACATCTAGTCACAAGGTAGCCAA
                      ____________________________________________________________
consensus             CCTCAATCAGAAAAGTTACTAATCTATCACTGTATCTACATCTAGTCACAAGGTAGCCAA
 
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rJMFF011A03-          TCAGAATTTCTTTACCTCGTCGAATGTGTTTGCTAGTAGCAACACCTAAGTTTCCAACAG
                      ____________________________________________________________
consensus             TCAGAATTTCTTTACCTCGTCGAATGTGTTTGCTAGTAGCAACACCTAAGTTTCCAACAG
 
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rJMFF011A03-          AAGCTAAAGAATTTATATGTACATTTCCTCTACCAATCTGACTGTGGGTTGAATGAAATA
                      ____________________________________________________________
consensus             AAGCTAAAGAATTTATATGTACATTTCCTCTACCAATCTGACTGTGGGTTGAATGAAATA
 
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rJMFF011A03-          CGCCCTGTGCTTCCAGGTTGAGCGGGTTTCCCATTTATTCCAGTTCCCATAAACCCATTA
                      ____________________________________________________________
consensus             CGCCCTGTGCTTCCAGGTTGAGCGGGTTTCCCATTTATTCCAGTTCCCATAAACCCATTA
 
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rJMFF011A03-          AATCCACTAGTAGTCATGCCAATCACTCCAACTCCACCGTTCAAATAGGCAGGATAGATA
                      ____________________________________________________________
consensus             AATCCACTAGTAGTCATGCCAATCACTCCAACTCCACCGTTCAAATAGGCAGGATAGATA
 
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rJMFF011A03-          GTTGCACCGCCATAAGGTAATGAACTTCCTGAGCCAATCCAAGGACCCCTAGGTGCAAAA
                      ____________________________________________________________
consensus             GTTGCACCGCCATAAGGTAATGAACTTCCTGAGCCAATCCAAGGACCCCTAGGTGCAAAA
 
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rJMFF011A03-          GGAGCAGCACCACAAACAAATCCACTGTATGTTCCAGCAGGGTAATCACTGCCGATAAAT
                      ____________________________________________________________
consensus             GGAGCAGCACCACAAACAAATCCACTGTATGTTCCAGCAGGGTAATCACTGCCGATAAAT
 
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rJMFF011A03-          CCAGCTTGATATGGATACCCTGCAACACTTTCATACCCCGTAATAGGTCCATAACTGGGG
                      ____________________________________________________________
consensus             CCAGCTTGATATGGATACCCTGCAACACTTTCATACCCCGTAATAGGTCCATAACTGGGG
 
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rJMFF011A03-          AAAACTCTGTAACTAGGACTAACAGGTGGATAAATTAAGTGCTGGTAACTTTCAAAGGAA
                      ____________________________________________________________
consensus             AAAACTCTGTAACTAGGACTAACAGGTGGATAAATTAAGTGCTGGTAACTTTCAAAGGAA
 
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rJMFF011A03-          GCACCCCTTCCACTACCATTATAAAAGTGGCTGTGACTGCTACTGCTACTACCATCTTTC
                      ____________________________________________________________
consensus             GCACCCCTTCCACTACCATTATAAAAGTGGCTGTGACTGCTACTGCTACTACCATCTTTC
 
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rJMFF011A03-          GGTACAGCCCTCTTAACCTCTACAAGCTTACCACACAACTCATGGAAATTCTTCTGTGTA
                      ____________________________________________________________
consensus             GGTACAGCCCTCTTAACCTCTACAAGCTTACCACACAACTCATGGAAATTCTTCTGTGTA
 
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rJMFF011A03-          ACTTGTTCAACAGCGTCCTCTGAACTAAAAGTAATAAACCCAAATCCCCGTGGCTTATGG
JMFF011A03+                             TCTGAACTAAAAGTAATAAACCCAAATCCCCGTGGCTTATGG
                      ____________________________________________________________
consensus             ACTTGTTCAACAGCGTCCTCTGAACTAAAAGTAATAAACCCAAATCCCCGTGGCTTATGG
 
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rJMFF011A03-          GTCACGTTGTCGTGCATCACAACTACGT-CCATGATCCTACCAAACCTTTCGAAATAA  
JMFF011A03+           GTCACGTTGTCGTGCATCACAACTACGTCCCATGATCCTACCAAACCTTTCGAAATAACC
                      ____________________________________________________________
consensus             GTCACGTTGTCGTGCATCACAACTACGTCCCATGATCCTACCAAACCTTTCGAAATAACC
 
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JMFF011A03+           CTTGAACTCTTCCTCAGTTAGAGTAGCTGATAACCCCCCGACAAAAATCTTTTTTGTGCT
                      ____________________________________________________________
consensus             CTTGAACTCTTCCTCAGTTAGAGTAGCTGATAACCCCCCGACAAAAATCTTTTTTGTGCT
 
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JMFF011A03+           AAACTGGTTATCGCTCCTACCGCTAGTCCTACTACTCCTACTCAACCCCTGCCTACTATG
                      ____________________________________________________________
consensus             AAACTGGTTATCGCTCCTACCGCTAGTCCTACTACTCCTACTCAACCCCTGCCTACTATG
 
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JMFF011A03+           TTGTTCTCTTTGTTCTTGTTCACTTCTAGGTATTGCTTTTTTCACCTCTACCGTTCTTCC
                      ____________________________________________________________
consensus             TTGTTCTCTTTGTTCTTGTTCACTTCTAGGTATTGCTTTTTTCACCTCTACCGTTCTTCC
 
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JMFF011A03+           GAGGATTTCATGGGTATCTCGGAGGGCATTATCAACGGCGGAGGGTTCGGTGAAGGAGAC
                      ____________________________________________________________
consensus             GAGGATTTCATGGGTATCTCGGAGGGCATTATCAACGGCGGAGGGTTCGGTGAAGGAGAC
 
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JMFF011A03+           GAAGGCGAACCCTCGAGGGTTGCCGGTAATTCCATCCTTGGCGATAGCAGCGCTAACCAC
                      ____________________________________________________________
consensus             GAAGGCGAACCCTCGAGGGTTGCCGGTAATTCCATCCTTGGCGATAGCAGCGCTAACCAC
 
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JMFF011A03+           GGTTCCGTACTTAGAGAAGTGTTCCCTGAGGGTCTCGTCGGTAGTCTGCCGGGAAACCCC
                      ____________________________________________________________
consensus             GGTTCCGTACTTAGAGAAGTGTTCCCTGAGGGTCTCGTCGGTAGTCTGCCGGGAAACCCC
 
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JMFF011A03+           TCCCACAAACAGCTTGCTTCTGTCCGAATCCTGCATTGCCCAAACGCAACGCCTGTAAAG
                      ____________________________________________________________
consensus             TCCCACAAACAGCTTGCTTCTGTCCGAATCCTGCATTGCCCAAACGCAACGCCTGTAAAG