Contig 005915:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010A17Sequence569005915 (6)gb|AGW21715.1|1e-80tobamovirus multiplication protein 1 [Nicotiana benthamiana]742005915 (6)ref|XP_009776464.1|5e-55PREDICTED: tobamovirus multiplication protein 1-like, partial [Nicotiana sylves
JMFN032P14Sequence576005915 (6)ref|XP_010647565.1|103PREDICTED: tobamovirus multiplication protein 1 [Vitis vinifera]
JMFS031G10Sequence593005915 (6)gb|AGW21715.1|6e-103tobamovirus multiplication protein 1 [Nicotiana benthamiana]
JMFS038C09Sequence604005915 (6)gb|AGW21715.1|1e-105tobamovirus multiplication protein 1 [Nicotiana benthamiana]
JMSF048L11Sequence660010909 (3)gb|AGW21715.1|7e-101tobamovirus multiplication protein 1 [Nicotiana benthamiana]728005915 (6)ref|XP_009776464.1|2e-51PREDICTED: tobamovirus multiplication protein 1-like, partial [Nicotiana sylves

Alignment

This contig is upended


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JMFN032P14-                                                                 GAGAGA
                      ____________________________________________________________
consensus                                                                   GAGAGA
 
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JMFN032P14-           GAACTAGTCTCGAGXXXXXXXXXXXXXXXXXXAACATGAACAATTGCAAAGTCAGTCTTT
rJMSF048L11-                                          AACATGAACAATTGCAAAGTCAGTCTTT
rJMFF010A17-                                          AACATGAACAATTGCAAAGTCAGTCTTT
                      ____________________________________________________________
consensus             GAACTAGTCTCGAGNNNNNNNNNNNNNNNNNNAACATGAACAATTGCAAAGTCAGTCTTT
 
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JMFN032P14-           CAGCAGGCAGCCAAGTTCATCAAGTTACACTGAGAGTGTACAACTACAAGAGGCAAAAGA
rJMSF048L11-          CAGCAGGCAGCCAAGTTCATCAAGTTACACTGAGAGTGTACAACTACAAGAGGCAAAAGA
rJMFF010A17-          CAGCAGGCAGCCAAGTTCATCAAGTTACACTGAGAGTGTACAACTACAAGAGGCAAAAGA
                      ____________________________________________________________
consensus             CAGCAGGCAGCCAAGTTCATCAAGTTACACTGAGAGTGTACAACTACAAGAGGCAAAAGA
 
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JMFN032P14-           AAGCCCACACCATCCTATATGAACATTACAGCAATGATTCTACGGGCATTAGCTTGAATC
rJMSF048L11-          AAGCCCACACCATCCTATATGAACATTACAGCAATGATTCTACGGGCATTAGCTTGAATC
rJMFF010A17-          AAGCCCACACCATCCTATATGAACATTACAGCAATGATTCTACGGGCATTAGCTTGAATC
                      ____________________________________________________________
consensus             AAGCCCACACCATCCTATATGAACATTACAGCAATGATTCTACGGGCATTAGCTTGAATC
 
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JMFN032P14-           TTGATGAACAACTGAAATTCCAAAATGCTAACACACACACACGCAGCTCATATTCCACGC
rJMSF048L11-          TTGATGAACAACTGAAATTCCAAAATGCTAACACACACACACGCAGCTCATATTCCACGC
rJMFF010A17-          TTGATGAACAACTGAAATTCCAAAATGCTAACACACACACACGCAGCTCATATTCCACGC
                      ____________________________________________________________
consensus             TTGATGAACAACTGAAATTCCAAAATGCTAACACACACACACGCAGCTCATATTCCACGC
 
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JMFN032P14-           CACAGAGAAACGAGAAAAATACGCGTTAATAGTAGCTTAAGCTTCACATGTTCGAGAAAA
rJMSF048L11-          CACAGAGAAACGAGAAAAATACGCGTTAATAGTAGCTTAAGCTTCACATGTTCGAGAAAA
rJMFF010A17-          CACAGAGAAACGAGAAAAATACGCGTTAATAGTAGCTTAAGCTTCACATGTTCGAGAAAA
                      ____________________________________________________________
consensus             CACAGAGAAACGAGAAAAATACGCGTTAATAGTAGCTTAAGCTTCACATGTTCGAGAAAA
 
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JMFN032P14-           ACAAGCTCCCACCGGGGTTCTCGTTCCTGATCTAACTTCAAACGCCACAACCATGGGAAA
rJMSF048L11-          ACAAGCTCCCACCGGGGTTCTCGTTCCTGATCTAACTTCAAACGCCACAACCATGGGAAA
rJMFF010A17-          ACAAGCTCCCACCGGGGTTCTCGTTCCTGATCTAACTTCAAACGCCACAACCATGGGAAA
                      ____________________________________________________________
consensus             ACAAGCTCCCACCGGGGTTCTCGTTCCTGATCTAACTTCAAACGCCACAACCATGGGAAA
 
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JMFN032P14-           ACAAATAATACTTCCCTCTGAGGACCGTAAAAATGCAGCTAACAGATGGGGTGGTACTGT
rJMSF048L11-          ACAAATAATACTTCCCTCTGAGGACCGTAAAAATGCAGCTAACAGATGGGGTGGTACTGT
rJMFF010A17-          ACAAATAATACTTCCCTCTGAGGACCGTAAAAATGCAGCTAACAGATGGGGTGGTACTGT
                      ____________________________________________________________
consensus             ACAAATAATACTTCCCTCTGAGGACCGTAAAAATGCAGCTAACAGATGGGGTGGTACTGT
 
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JMFN032P14-           GCAGATACTCGTTTCGGGGGCAGTTTACGCAGGATGTAGAGAACGAGAGCCGAAGGAAGA
rJMSF048L11-          GCAGATACTCGTTTCGGGGGCAGTTTACGCAGGATGTAGAGAACGAGAGCCGAAGGAAGA
rJMFF010A17-          GCAGATACTCGTTTCGGGGGCAGTTTACGCAGGATGTAGAGAACGAGAGCCGAAGGAAGA
                      ____________________________________________________________
consensus             GCAGATACTCGTTTCGGGGGCAGTTTACGCAGGATGTAGAGAACGAGAGCCGAAGGAAGA
 
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JMFN032P14-           ATCTCCACTAGCACGTAATATATCAGATTCAGAACTGGATGGTCCAATACATCGAGTGTT
rJMSF048L11-          ATCTCCACTAGCACGTAATATATCAGATTCAGAACTGGATGGTCCAATACATCGAGTGTT
rJMFF010A17-          ATCTCCACTAGCACGTAATATATCAGATTCAGAACTGGATGGTCCAATACATCGAGTGTT
                      ____________________________________________________________
consensus             ATCTCCACTAGCACGTAATATATCAGATTCAGAACTGGATGGTCCAATACATCGAGTGTT
 
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JMFN032P14-           GCATCAGAATCGAAAGCAGACAGCACAACC                              
rJMSF048L11-          GCATCAGAATCGAAAGCAGACAGCACAACCACAAAACATCTTATGACGAAACAGGTGAAA
rJMFF010A17-          GCATCAGAATCGAAAGCAGACAGCACAACCACAAAACATCTTATGACGAAACAGGTGAAA
                      ____________________________________________________________
consensus             GCATCAGAATCGAAAGCAGACAGCACAACCACAAAACATCTTATGACGAAACAGGTGAAA
 
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rJMSF048L11-          CATATGGCTGTCACGGATCCAACCTCGTGAAGCTTCTTTCTTCTCCCTTTGGATTCAATA
rJMFF010A17-          CATATGGCTGTCACGGATCCAACCTCGTGAAGCTTCTTTCTTCTCCCTTTGGATTCAATA
                      ____________________________________________________________
consensus             CATATGGCTGTCACGGATCCAACCTCGTGAAGCTTCTTTCTTCTCCCTTTGGATTCAATA
 
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rJMSF048L11-          GGAAAGCGTCTCAGCATGAAAAACAGCCTTCCTCCATAAAGTAAGAAACCCAACGCTGCT
rJMFF010A17-          GGAAAGCGTCTCAGCATGAAAAACAGCCTTCCTCCATAAAGTAAGAAACCCAACGCTGCT
JMFS038C09+                                             CATAAAGTAAGAAACCCAACGCTGCT
JMFS031G10+                                                        AAACCCAACGCTGCT
                      ____________________________________________________________
consensus             GGAAAGCGTCTCAGCATGAAAAACAGCCTTCCTCCATAAAGTAAGAAACCCAACGCTGCT
 
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rJMSF048L11-          ATGAATGAAACAACCGCGA                                         
rJMFF010A17-          ATGAATGAAACAACCGCGATAAATATCTTTCCAA                          
JMFS038C09+           ATGAATGAAACAACCGCGATAAATATCTTTCCAATAAACTCAATGGCACTATTGTCATTA
JMFS031G10+           ATGAATGAAACAACCGCGATAAATATCTTTCCAATAAACTCAATGGCACTATTGTCATTA
JMFF010A17+                                          CAATAAACTCAATGGCACTATTGTCATTA
                      ____________________________________________________________
consensus             ATGAATGAAACAACCGCGATAAATATCTTTCCAATAAACTCAATGGCACTATTGTCATTA
 
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JMFS038C09+           ATCCAAAGGTACACCCATATA-CCACCCTGTATGATGTATATTCCAGCATTGATTGAAAT
JMFS031G10+           ATCCAAAGGTACACCCATATA-CCACCCTGTATGATGTATATTCCAGCATTGATTGAAAT
JMFF010A17+           ATCCAAAGGTACACCCATATACCCACCCTGTATGATGTATATTCCAGCATTGATTGAAAT
                      ____________________________________________________________
consensus             ATCCAAAGGTACACCCATATA-CCACCCTGTATGATGTATATTCCAGCATTGATTGAAAT
 
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JMFS038C09+           ATAAAACAATCTGAGCTTATCAGTTGGCAAACTTCTAGCCTGGCGATATATTTCTGCCCA
JMFS031G10+           ATAAAACAATCTGAGCTTATCAGTTGGCAAACTTCTAGCCTGGCGATATATTTCTGCCCA
JMFF010A17+           ATAAAACAATCTGAGCTTATCAGTTGGCAAACTTCTAGCCTGGCGATATATTTCTGCCCA
                      ____________________________________________________________
consensus             ATAAAACAATCTGAGCTTATCAGTTGGCAAACTTCTAGCCTGGCGATATATTTCTGCCCA
 
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JMFS038C09+           GAATAGGGCAAGAAGTGTATAAGTTGAGAAAAAAAGCAACCCAGGGAGGTCCAACATTAC
JMFS031G10+           GAATAGGGCAAGAAGTGTATAAGTTGAGAAAAAAAGCAACCCAGGGAGGTCCAACATTAC
JMFF010A17+           GAATAGGGCAAGAAGTGTATAAGTTGAGAAAAAAAGCAACCCAGGGAGGTCCAACATTAC
                      ____________________________________________________________
consensus             GAATAGGGCAAGAAGTGTATAAGTTGAGAAAAAAAGCAACCCAGGGAGGTCCAACATTAC
 
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JMFS038C09+           CAAAGTAAGCACCTTGGGATGGAAAAGAAACACTTGTTTGTGAAATCCAAAGACAATAGC
JMFS031G10+           CAAAGTAAGCACCTTGGGATGGAAAAGAAACACTTGTTTGTGAAATCCAAAGACAATAGC
JMFF010A17+           CAAAGTAAGCACCTTGGGATGGAAAAGAAACACTTGTTTGTGAAATCCAAAGACAATAGC
                      ____________________________________________________________
consensus             CAAAGTAAGCACCTTGGGATGGAAAAGAAACACTTGTTTGTGAAATCCAAAGACAATAGC
 
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JMFS038C09+           ACGAACTCCATTTACAATGAAATTCATAAGATGAAAGACCTTTTGTGTTGTCCAGCCAAA
JMFS031G10+           ACGAACTCCATTTACAATGAAATTCATAAGATGAAAGACCTTTTGTGTTGTCCAGCCAAA
JMFF010A17+           ACGAACTCCATTTACAATGAAATTCATAAGATGAAAGACCTTTTGTGTTGTCCAGCCAAA
                      ____________________________________________________________
consensus             ACGAACTCCATTTACAATGAAATTCATAAGATGAAAGACCTTTTGTGTTGTCCAGCCAAA
 
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JMFS038C09+           CTCTGGCACTCTCAGTTCAATTCTTATCAATTGAATAAGGGCAACGGCGGAGACGAGTGC
JMFS031G10+           CTCTGGCACTCTCAGTTCAATTCTTATCAATTGAATAAGGGCAACGGCGGAGACGAGTGC
JMFF010A17+           CTCTGGCACTCTCAGTTCAATTCTTATCAATTGAATAAGGGCAACGGCGGAGACGAGTGC
                      ____________________________________________________________
consensus             CTCTGGCACTCTCAGTTCAATTCTTATCAATTGAATAAGGGCAACGGCGGAGACGAGTGC
 
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JMFS038C09+           AAAGGCACCGCAGAGTGAATAGAAGATTCCATCTTGCCATTCAACTGATTCATTGATCTC
JMFS031G10+           AAAGGCACCGCAGAGTGAATAGAAGATTCCATCTTGCCATTCAACTGATTCATTGATCTC
JMFF010A17+           AAAGGCACCGCAGAGTGAATAGAAGATTCCATCTTGCCATTCAACTGATTCATTGATCTC
                      ____________________________________________________________
consensus             AAAGGCACCGCAGAGTGAATAGAAGATTCCATCTTGCCATTCAACTGATTCATTGATCTC
 
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JMFS038C09+           GTCCCACCAGTTCGCCGGAGACAGCGATACAACGCCGGCGATAAGATCCGGCAGCGCTCT
JMFS031G10+           GTCCCACCAGTTCGCCGGAGACAGCGATACAACGCCGGCGATAAGATCCGGCAGCGCTCT
JMFF010A17+           GTCCCACCAGTTCGCCGGAGACAGCGATACAACGCCGGCGATAAGATCCGGCAGCGCTCT
                      ____________________________________________________________
consensus             GTCCCACCAGTTCGCCGGAGACAGCGATACAACGCCGGCGATAAGATCCGGCAGCGCTCT
 
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JMFS038C09+           GACCATCGCACTTTGACCTTCTCCCCAACTCTCTATCAG                     
JMFS031G10+           GACCATCGCACTTTGACCTTCTCCCCAACTCTCTATCAG                     
JMFF010A17+           GACCATCGCACTTTGACCTTCTCCCCAACTCTCTATCAGTCTATCTTACCTGCGCTAGTC
                      ____________________________________________________________
consensus             GACCATCGCACTTTGACCTTCTCCCCAACTCTCTATCAGTCTATCTTACCTGCGCTAGTC