Contig 005913:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009L14Sequence367005913 (2)ref|XP_006587015.1|5e-40PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Glycine max]333005913 (2)ref|XP_006587015.1|3e-40PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Glycine max]

Alignment

This contig is upended


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rJMFF009L14+                                                                   TTG
JMFF009L14-                                                                ACTCTTG
                      ____________________________________________________________
consensus                                                                  ACTCTTG
 
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rJMFF009L14+          CGAGGACTGGTAAGGATACGCTGCATATAGCTCTTCTAGCTGCTACGCTCTCGCCATGGG
JMFF009L14-           CGAGGACTGGTAAGGATACGCTGCATATAGCTCTTCTAGCTGCTACGCTCTCGCCATGGG
                      ____________________________________________________________
consensus             CGAGGACTGGTAAGGATACGCTGCATATAGCTCTTCTAGCTGCTACGCTCTCGCCATGGG
 
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rJMFF009L14+          TCTCGCTGACGACCCAGAGGCTTTCGCCGAGCTCAAGGTGAAGGAGCTCAAGAATGGCAG
JMFF009L14-           TCTCGCTGACGACCCAGAGGCTTTCGCCGAGCTCAAGGTGAAGGAGCTCAAGAATGGCAG
                      ____________________________________________________________
consensus             TCTCGCTGACGACCCAGAGGCTTTCGCCGAGCTCAAGGTGAAGGAGCTCAAGAATGGCAG
 
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rJMFF009L14+          ACTTGCCATGTTCTCCATGTTCGGATTCTTCGTTCAGGCCATCGTTACCGGAAAGGGCCC
JMFF009L14-           ACTTGCCATGTTCTCCATGTTCGGATTCTTCGTTCAGGCCATCGTTACCGGAAAGGGCCC
                      ____________________________________________________________
consensus             ACTTGCCATGTTCTCCATGTTCGGATTCTTCGTTCAGGCCATCGTTACCGGAAAGGGCCC
 
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rJMFF009L14+          ATTGGAGAACCTCGCCGACCACCTTGCCGACCCAGTTAACAACAACGCCTGGGCCTATGC
JMFF009L14-           ATTGGAGAACCTCGCCGACCACCTTGCCGACCCAGTTAACAACAACGCCTGGGCCTATGC
                      ____________________________________________________________
consensus             ATTGGAGAACCTCGCCGACCACCTTGCCGACCCAGTTAACAACAACGCCTGGGCCTATGC
 
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rJMFF009L14+          CACAAACTTCGTTCCCGGAAAGTGAATATGAACAGTAGAGTTAGTGCATGTGTTTTTGTG
JMFF009L14-           CACAAACTTCGTTCCCGGAAAGTGAATATGAACAGTAGAGTTAGTGCATGTGTTTTTGTG
                      ____________________________________________________________
consensus             CACAAACTTCGTTCCCGGAAAGTGAATATGAACAGTAGAGTTAGTGCATGTGTTTTTGTG
 
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rJMFF009L14+          TGATGTGCTGAAGTGGTTTGATCTAA                                  
JMFF009L14-           TGATGTGCTGAAGTGGTTTGATCTAATGGATAATATGTGAATTCTTTGCGAAAAAAAAAA
                      ____________________________________________________________
consensus             TGATGTGCTGAAGTGGTTTGATCTAATGGATAATATGTGAATTCTTTGCGAAAAAAAAAA