| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF007L03 | Sequence | 537 | 005902 (6) | ref|XP_009620049.1| | 3e-46 | PREDICTED: probable prolyl 4-hydroxylase 3 [Nicotiana tomentosiformis] | 772 | 005902 (6) | ref|XP_009620049.1| | 3e-130 | PREDICTED: probable prolyl 4-hydroxylase 3 [Nicotiana tomentosiformis] |
| JMFF046P17 | Sequence | 591 | 005902 (6) | ref|XP_009620049.1| | 2e-55 | PREDICTED: probable prolyl 4-hydroxylase 3 [Nicotiana tomentosiformis] | 472 | 005902 (6) | ref|XP_009620049.1| | 6e-44 | PREDICTED: probable prolyl 4-hydroxylase 3 [Nicotiana tomentosiformis] |
| JMSF033A23 | Sequence | 682 | 005902 (6) | ref|XP_009620049.1| | 4e-82 | PREDICTED: probable prolyl 4-hydroxylase 3 [Nicotiana tomentosiformis] | 716 | 005902 (6) | ref|XP_009620049.1| | 4e-131 | PREDICTED: probable prolyl 4-hydroxylase 3 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMFF046P17- CTATT
____________________________________________________________
consensus CTATT
. : . : . : . : . : . :
rJMFF046P17- AATTTGTATTGCTTCTTAACCTACATCAAGCTCATAACAACTTTGAGGGGAAAATAAAAG
rJMFF007L03- ACTTTGAGGGGAAAATAAAAG
____________________________________________________________
consensus AATTTGTATTGCTTCTTAACCTACATCAAGCTCATAACAACTTTGAGGGGAAAATAAAAG
. : . : . : . : . : . :
rJMFF046P17- TTAAAAAGCGTGTATACCTCTTCTAAACACAGAGAGAAGATTTTGATGGGGCTAGTAAAG
rJMFF007L03- TTAAAAAGCGTGTATACCTCTTCTAAACACAGAGAGAAGATTTTGATGGGGCTAGTAAAG
rJMSF033A23- AAGATTTTGATGGGGCTAGTAAAG
____________________________________________________________
consensus TTAAAAAGCGTGTATACCTCTTCTAAACACAGAGAGAAGATTTTGATGGGGCTAGTAAAG
. : . : . : . : . : . :
rJMFF046P17- AAAAAATACAAATTTGAATTCGCTCAAATGTAGAATTTAGAATTGGACAATTACCAAAAT
rJMFF007L03- AAAAAATACAAATTTGAATTCGCTCAAATGTAGAATTTAGAATTGGACAATTACCAAAAT
rJMSF033A23- AAAAAATACAAATTTGAATTCGCTCAAATGTAGAATTTAGAATTGGACAATTACCAAAAT
____________________________________________________________
consensus AAAAAATACAAATTTGAATTCGCTCAAATGTAGAATTTAGAATTGGACAATTACCAAAAT
. : . : . : . : . : . :
rJMFF046P17- ATACCTAGAGGCACCATCAAAGAACTGTAACACCTATTGAAAAATAATTAGAGCTTGTAC
rJMFF007L03- ATACCTAGAGGCACCATCAAAGAACTGTAACACCTATTGAAAAATAATTAGAGCTTGTAC
rJMSF033A23- ATACCTAGAGGCACCATCAAAGAACTGTAACACCTATTGAAAAATAATTAGAGCTTGTAC
____________________________________________________________
consensus ATACCTAGAGGCACCATCAAAGAACTGTAACACCTATTGAAAAATAATTAGAGCTTGTAC
. : . : . : . : . : . :
rJMFF046P17- TCACCAACATGCATCCACTTAGTAGAAGACCACTTGTTTCCTCTTATAACAGGGCAACCA
rJMFF007L03- TCACCAACATGCATCCACTTAGTAGAAGACCACTTGTTTCCTCTTATAACAGGGCAACCA
rJMSF033A23- TCACCAACATGCATCCACTTAGTAGAAGACCACTTGTTTCCTCTTATAACAGGGCAACCA
____________________________________________________________
consensus TCACCAACATGCATCCACTTAGTAGAAGACCACTTGTTTCCTCTTATAACAGGGCAACCA
. : . : . : . : . : . :
rJMFF046P17- CCATGCAAACTTGATGGGTCCAAGGTTGCATCAGGCCTCATGCTCCAAAAAAGTAACGCA
rJMFF007L03- CCATGCAAACTTGATGGGTCCAAGGTTGCATCAGGCCTCATGCTCCAAAAAAGTAACGCA
rJMSF033A23- CCATGCAAACTTGATGGGTCCAAGGTTGCATCAGGCCTCATGCTCCAAAAAAGTAACGCA
____________________________________________________________
consensus CCATGCAAACTTGATGGGTCCAAGGTTGCATCAGGCCTCATGCTCCAAAAAAGTAACGCA
. : . : . : . : . : . :
rJMFF046P17- TCACCCATTTTTGGTTTCACAGAAAGGCCCCTTTTCGCACATTCTGACATCTCATTCCAC
rJMFF007L03- TCACCCATTTTTGGTTTCACAGAAAGGCCCCTTTTCGCACATTCTGACATCTCATTCCAC
rJMSF033A23- TCACCCATTTTTGGTTTCACAGAAAGGCCCCTTTTCGCACATTCTGACATCTCATTCCAC
____________________________________________________________
consensus TCACCCATTTTTGGTTTCACAGAAAGGCCCCTTTTCGCACATTCTGACATCTCATTCCAC
. : . : . : . : . : . :
rJMFF046P17- CCAGGCATAGAGCTAANATTGCCTTTCACCGAAGGGAAAACTGTCTC
rJMFF007L03- CCAGGCATAGAGCTAAAATTGCCTTTCACCGAAGGAAAAACTGTCTCACCCCCTTCTTCA
rJMSF033A23- CCAGGCATAGAGCTAAAATTGCCTTTCACCGAAGGAAAAACTGTCTCACCCCCTTCTTCA
____________________________________________________________
consensus CCAGGCATAGAGCTAAAATTGCCTTTCACCGAAGGAAAAACTGTCTCACCCCCTTCTTCA
. : . : . : . : . : . :
rJMFF007L03- ACATCTGAAAGATACATGAGTAGAGTAGCTAGACGTTGTGCCCCATTCTTCGTGTTGAAT
rJMSF033A23- ACATCTGAAAGATACATGAGTAGAGTAGCTAGACGTTGTGCCCCATTCTTCGTGTTGAAT
____________________________________________________________
consensus ACATCTGAAAGATACATGAGTAGAGTAGCTAGACGTTGTGCCCCATTCTTCGTGTTGAAT
. : . : . : . : . : . :
rJMFF007L03- TCATCAAGAAAATAATCAAAATGAGGCTCATATTTTTGTCCAACTTCATAGTGGAGAACT
rJMSF033A23- TCATCAAGAAAATAATCAAAATGAGGCTCATATTTTTGTCCAACTTCATAGTGGAGAACT
JMSF033A23+ TTTGTCCAACTTCATAGTGGAGAACT
____________________________________________________________
consensus TCATCAAGAAAATAATCAAAATGAGGCTCATATTTTTGTCCAACTTCATAGTGGAGAACT
. : . : . : . : . : . :
rJMFF007L03- TGTAGACCTTCTCCATGCTCTACAGGAATAAATGTGTAGTCTGCTATCCTTTTCTCAATG
rJMSF033A23- TGTAGACCTTCTCCATGCTCTACAGGAATAAATGTGTAGTCTGCTATCCTTTTCTCAATG
JMSF033A23+ NGTAGACCTTCTCCATGCTCTACAGGAATAAATGTGTAGTCTGCTATCCTTTTCTCAATG
____________________________________________________________
consensus TGTAGACCTTCTCCATGCTCTACAGGAATAAATGTGTAGTCTGCTATCCTTTTCTCAATG
. : . : . : . : . : . :
rJMFF007L03- TTCTTAATAACTTTATCATGTCCCCTCCTTAAAAACATTCCTGAACTTGTGCGAACCCTG
rJMSF033A23- TTCTTAATAACTTTATCATGTCCCCTCCTTAAAAACATTCCTGAACTTGTGCGAACCCTG
JMSF033A23+ TTCTTAATAACTTTATCATGTCCCCTCCTTAAAAACATTCCTGAACTTGTGCGAACCCTG
JMFF046P17+ ACTTTATCATGTCCCNTCCTTAAAAACATTCCTGAACTTGTGCGAACCCTG
____________________________________________________________
consensus TTCTTAATAACTTTATCATGTCCCCTCCTTAAAAACATTCCTGAACTTGTGCGAACCCTG
. : . : . : . : . : . :
rJMFF007L03- CTGTCTTTACTTTTACCAGTTTTGCTATCTACAACAGTAGACTTTGCCATGTGAGGTTTG
rJMSF033A23- CTGTCTTTACTTTTACCAGTTTTGCTATCTACNACAGTAGACTTTGCCATGTGAGGTTTG
JMSF033A23+ CTGTCTTTACTTTTACCAGTTTTGCTATCTACAACAGTAGACTTTGCCATGTGAGGTTTG
JMFF046P17+ CTGTCTTTACTNTTACCAGTTNTGCTATCTACAACAGTAGACTNTGCCATGTGAGGTTTG
JMFF007L03+ TCTTTACTTTTACCAGTTTTGCTATCTACAACAGTAGACTTTGCCATGTGAGGTTTG
____________________________________________________________
consensus CTGTCTTTACTTTTACCAGTTTTGCTATCTACAACAGTAGACTTTGCCATGTGAGGTTTG
. : . : . : . : . : . :
rJMFF007L03- GCTAAATTTATCAAGTATTCACATTCTGCCT
rJMSF033A23- GCTAAATTTATCAAGTATTCACATTCTGCCTT
JMSF033A23+ GCTAAATTTATCAAGTATTCACATTCTGCCTTGGACAAGAAATTGTGATAAACAAAAGCC
JMFF046P17+ GCTAAATTTATCAAGTATTCACATTCTGCCTTGGACAAGAAATTGTGATAAACAAAAGCC
JMFF007L03+ GCTAAATTTATCAAGTATTCACATTCTGCCTTGGACAAGAAATTGTGATAAACAAAAGCC
____________________________________________________________
consensus GCTAAATTTATCAAGTATTCACATTCTGCCTTGGACAAGAAATTGTGATAAACAAAAGCC
. : . : . : . : . : . :
JMSF033A23+ CTAGGCTCCCAAGAAAGAATCTCAGTCCATTGTTCTCCCCTTTTCCCGAAACCATCATCC
JMFF046P17+ CTAGGCTCCCAAGAAAGAATCTCAGTCCATTGTTCTCCCCTTTTCCCGAAACCATCATCC
JMFF007L03+ CTAGGCTCCCAAGAAAGAATCTCAGTCCATTGTTCTCCCCTTTTCCCGAAACCATCATCC
____________________________________________________________
consensus CTAGGCTCCCAAGAAAGAATCTCAGTCCATTGTTCTCCCCTTTTCCCGAAACCATCATCC
. : . : . : . : . : . :
JMSF033A23+ TCCACTACATCTAGAGACATGCGCTTGAATCTGATACGACTCCGGATAGAAGAGGGTTCA
JMFF046P17+ TCCACTACATCTAGAGACATGCGCTTGAATCTGATACGACTCCGGATAGAAGAGGGTTCA
JMFF007L03+ TCCACTACATCTAGAGACATGCGCTTGAATCTGATACGACTCCGGATAGAAGAGGGTTCA
____________________________________________________________
consensus TCCACTACATCTAGAGACATGCGCTTGAATCTGATACGACTCCGGATAGAAGAGGGTTCA
. : . : . : . : . : . :
JMSF033A23+ TCGTCAGATCCAATAGGGAGATTGAGTATTCCTAGAGCGAGGAGCATCAGAAGCACAAGT
JMFF046P17+ TCGTCAGATCCAATAGGGAGATTGAGTATTCCTAGAGCGAGGAGCATCAGAAGCACAAGT
JMFF007L03+ TCGTCAGATCCAATAGGGAGATTGAGTATTCCTAGAGCGAGGAGCATCAGAAGCACAAGT
____________________________________________________________
consensus TCGTCAGATCCAATAGGGAGATTGAGTATTCCTAGAGCGAGGAGCATCAGAAGCACAAGT
. : . : . : . : . : . :
JMSF033A23+ GTCAGCATTAGAAGCATGGAGAGCACCAAAGACATGGTCGAGGTTCTCCTCCCTTGGTGC
JMFF046P17+ GTCAGCATTAGAAGCATGGAGAGCACCAAAGACATGGTCGAGGTTCTCCTCCCTTGGTGC
JMFF007L03+ GTCAGCATTAGAAGCATGGAGAGCACCAAAGACATGGTCGAGGTTCTCCTCCCTTGGTGC
____________________________________________________________
consensus GTCAGCATTAGAAGCATGGAGAGCACCAAAGACATGGTCGAGGTTCTCCTCCCTTGGTGC
. : . : . : . : . : . :
JMSF033A23+ CTACTCCCCCTTGGCTTCGCCATTGTTAAACAGCTCGGCCCAGTTTACAAATTTACAGGA
JMFF046P17+ CTACTCCCCCTTGGCTTCGCCATTGTTAAACAGCTCGGCCCAGTTTACAAATTTACAGGA
JMFF007L03+ CTACTCCCCCTTGGCTTCGCCATTGTTAAACAGCTCGGCCCAGTTTACAAATTTACAGGA
____________________________________________________________
consensus CTACTCCCCCTTGGCTTCGCCATTGTTAAACAGCTCGGCCCAGTTTACAAATTTACAGGA
. : . : . : . : . : . :
JMSF033A23+ ATCCTAACACTAGATTTATCGATCGATCAGTGAATTTGCACATCACACCCGATTTGTCGC
JMFF046P17+ ATCCTAACACTAGATTTATCGATCGATCAGTGAATTTGCACATCACACCCGATTTGTCGC
JMFF007L03+ ATCCTAACACTAGATTTATCGATCGATCAGTGAATTTGCACATCACACCCGATTTGTCGC
____________________________________________________________
consensus ATCCTAACACTAGATTTATCGATCGATCAGTGAATTTGCACATCACACCCGATTTGTCGC
. : . : . : . : . : . :
JMSF033A23+ CGGAGGTTTTACAGTTGATTCTAAAAAGAAAAAAATAAATAAAAAACGTTGAC
JMFF046P17+ CGGAGGTTTTACAGTTGATTCTAAAAAGAAAAAAATAAATAAAAAACGTTGAC
JMFF007L03+ CGGAGGTTTTACAGTTGATTCTAAAAAGAAAAAAATAAATAAAAAACGTTGACCCGATGA
____________________________________________________________
consensus CGGAGGTTTTACAGTTGATTCTAAAAAGAAAAAAATAAATAAAAAACGTTGACCCGATGA