Contig 005898:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006H04Sequence574005898 (3)ref|XP_004238357.1|2e-28PREDICTED: alkaline/neutral invertase CINV2 [Solanum lycopersicum]645009617 (3)gb|AFW90589.1|1e-104neutral invertase like protein [Solanum tuberosum]
JMFF036G17Sequence573005898 (3)ref|XP_004238357.1|2e-28PREDICTED: alkaline/neutral invertase CINV2 [Solanum lycopersicum]743009617 (3)gb|AFW90589.1|3e-131neutral invertase like protein [Solanum tuberosum]
JMSF015E18Sequence448005898 (3)ref|XP_004238357.1|2e-37PREDICTED: alkaline/neutral invertase CINV2 [Solanum lycopersicum]778009617 (3)ref|XP_009595684.1|2e-141PREDICTED: alkaline/neutral invertase CINV2-like isoform X1 [Nicotiana tomentos

Alignment

This contig is upended


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JMSF015E18+                                    ATTAAGGCATGCGGCTCGAAAGTATAAATTGATCT
                      ____________________________________________________________
consensus                                      ATTAAGGCATGCGGCTCGAAAGTATAAATTGATCT
 
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JMSF015E18+           AGGAGTACTAATGGAAGACCTTCTTCCTGGAGAGTACATACCATCATAATGGTCAAAAAC
JMFF036G17+                                      TGGAGAGTACATACCATCATAATGGTCAAAAAC
JMFF006H04+                                      TGGAGAGTACATACCATCATAATGGTCAAAAAC
                      ____________________________________________________________
consensus             AGGAGTACTAATGGAAGACCTTCTTCCTGGAGAGTACATACCATCATAATGGTCAAAAAC
 
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JMSF015E18+           ACGAGACGAGTTCTCGGGATTTCTGTATATTTGCCGCGGTGGAGAGTGACTTATGGACAG
JMFF036G17+           ACGAGACGAGTTCTCGGGATTTCTGTATATTTGCCGCGGTGGAGAGTGACTTATGGACAG
JMFF006H04+           ACGAGACGAGTTCTCGGGATTTCTGTATATTTGCCGCGGTGGAGAGTGACTTATGGACAG
                      ____________________________________________________________
consensus             ACGAGACGAGTTCTCGGGATTTCTGTATATTTGCCGCGGTGGAGAGTGACTTATGGACAG
 
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JMSF015E18+           TTCACTGAAGGATCTTTCGTCAAATGATCTCTTCCTTTCTATGTTCAAAGGCCTCGGCTT
JMFF036G17+           TTCACTGAAGGATCTTTCGTCAAATGATCTCTTCCTTTCTATGTTCAAAGGCCTCGGCTT
JMFF006H04+           TTCACTGAAGGATCTTTCGTCAAATGATCTCTTCCTTTCTATGTTCAAAGGCCTCGGCTT
                      ____________________________________________________________
consensus             TTCACTGAAGGATCTTTCGTCAAATGATCTCTTCCTTTCTATGTTCAAAGGCCTCGGCTT
 
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JMSF015E18+           TTCCAGTAATCTAGCCAAATCAGAATCTCCAATTTCAAATAACGAGCCAGATTCATGATG
JMFF036G17+           TTCCAGTAATCTAGCCAAATCAGAATCTCCAATTTCAAATAACGAGCCAGATTCATGATG
JMFF006H04+           TTCCAGTAATCTAGCCAAATCAGAATCTCCAATTTCAAATAACGAGCCAGATTCATGATG
                      ____________________________________________________________
consensus             TTCCAGTAATCTAGCCAAATCAGAATCTCCAATTTCAAATAACGAGCCAGATTCATGATG
 
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JMSF015E18+           TTTCGCAGTTCCATTTTGAGGTGAATCCGAAGGGGCAGGTGACATTGTGGGATACTTTAT
JMFF036G17+           TTTCGCAGTTCCATTTTGAGGTGAATCCGAAGGGGCAGGTGACATTGTGGGATACTTTCT
JMFF006H04+           TTTCGCAGTTCCATTTTGAGGTGAATCCGAAGGGGCAGGTGACATTGTGGGATACTTTCT
                      ____________________________________________________________
consensus             TTTCGCAGTTCCATTTTGAGGTGAATCCGAAGGGGCAGGTGACATTGTGGGATACTTTCT
 
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JMSF015E18+           GAAACCTCTAACCAAAAAGAATTGATGATGAACCTTAAAATCTCGTAATTAACGAAGATG
JMFF036G17+           GAAACCTCTAACCAAAAAGAATTGATGATGAACCTTAAAATCTCGTAATTAACGAAGATG
JMFF006H04+           GAAACCTCTAACCAAAAAGAATTGATGATGAACCTTAAAATCTCGTAATTAACGAAGATG
                      ____________________________________________________________
consensus             GAAACCTCTAACCAAAAAGAATTGATGATGAACCTTAAAATCTCGTAATTAACGAAGATG
 
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JMSF015E18+           AGCCTTCGAACGCAACAAAAATATAAAGTTGAAGTCTTGAAGATGTGAAAG         
JMFF036G17+           AGCCTTCGAACGCAACAAAAATATAAAGTTGAAGTCTTGAAGATGTGAAAGCAGTAGAGG
JMFF006H04+           AGCCTTCGAACGCAACAAAAATATAAAGTTGAAGTCTTGAAGATGTGAAAGCAGTAGAGG
                      ____________________________________________________________
consensus             AGCCTTCGAACGCAACAAAAATATAAAGTTGAAGTCTTGAAGATGTGAAAGCAGTAGAGG
 
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JMFF036G17+           TTTGACCCAACAGGACGGCTTATATAGAAGGAGATGGCATGAGGTTGGTGGGCTGTCCGG
JMFF006H04+           TTTGACCCAACAGGACGGCTTATATAGAAGGAGATGGCATGAGGTTGGTGGGCTGTCCGG
                      ____________________________________________________________
consensus             TTTGACCCAACAGGACGGCTTATATAGAAGGAGATGGCATGAGGTTGGTGGGCTGTCCGG
 
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JMFF036G17+           AAACCGGGGAATTCCAGTCAAAAAGGTTACACAGACCGGATGTGTCCGTACAGTTTTGAG
JMFF006H04+           AAACCGGGGAATTCCAGTCAAAAAGGTTACACAGACCGGATGTGTCCGTACAGTTTTGAG
                      ____________________________________________________________
consensus             AAACCGGGGAATTCCAGTCAAAAAGGTTACACAGACCGGATGTGTCCGTACAGTTTTGAG
 
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JMFF036G17+           CTTGGGAGTTGGGATATGGAAGGTGACCGGCACGTAGGAAAGTCTCGGAAGATCCGATGA
JMFF006H04+           CTTGGGAGTTGGGATATGGAAGGTGACCGGCACGTAGGAAAGTCTCGGAAGATCCGATGA
                      ____________________________________________________________
consensus             CTTGGGAGTTGGGATATGGAAGGTGACCGGCACGTAGGAAAGTCTCGGAAGATCCGATGA