Contig 005896:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006B08Sequence444005896 (3)ref|XP_009791101.1|8e-26PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 [Nicotian588021222emb|CDO99003.1|2e-46unnamed protein product [Coffea canephora]
JMFF027M17Sequence566005896 (3)ref|XP_009791101.1|2e-64PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 [Nicotian747005896 (3)ref|XP_006349233.1|2e-93PREDICTED: nuclear transcription factor Y subunit C-9 isoform X4 [Solanum tuber

Alignment

This contig is upended


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rJMFF027M17-                                                             CATAATGCA
                      ____________________________________________________________
consensus                                                                CATAATGCA
 
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rJMFF027M17-          TAATGCATAATTCATTGCATCCAGACAGGCAGGCAGCAGTACAGGTATTAAAAAACAAGA
                      ____________________________________________________________
consensus             TAATGCATAATTCATTGCATCCAGACAGGCAGGCAGCAGTACAGGTATTAAAAAACAAGA
 
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rJMFF027M17-          ACCAACACACACTTGGTTCTTCAAATGTTATCCTGTATGTATCAAGAGTTGTATTATGTG
                      ____________________________________________________________
consensus             ACCAACACACACTTGGTTCTTCAAATGTTATCCTGTATGTATCAAGAGTTGTATTATGTG
 
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rJMFF027M17-          GCAGGCAGTTTATTCTGGGGTGAATGAGATCTCCATTATACTGTTTGTTGCATACACATA
                      ____________________________________________________________
consensus             GCAGGCAGTTTATTCTGGGGTGAATGAGATCTCCATTATACTGTTTGTTGCATACACATA
 
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rJMFF027M17-          TAATCCCTCCCAGAGTACATTATCTTTCATCATGGTCCATTGATGCTTAAGAATCTGATG
                      ____________________________________________________________
consensus             TAATCCCTCCCAGAGTACATTATCTTTCATCATGGTCCATTGATGCTTAAGAATCTGATG
 
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rJMFF027M17-          GAGGTTGCTGTTGTTGCTGAGGCCACATTGTCTGAGCCATATAGGGACGGGGCTGCTGTC
                      ____________________________________________________________
consensus             GAGGTTGCTGTTGTTGCTGAGGCCACATTGTCTGAGCCATATAGGGACGGGGCTGCTGTC
 
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rJMFF027M17-          CATAAAGAGTTTGGTCAACAGGCTTACCCATGTACATCCCCCCCGAGGCTCCTACCTGCG
                      ____________________________________________________________
consensus             CATAAAGAGTTTGGTCAACAGGCTTACCCATGTACATCCCCCCCGAGGCTCCTACCTGCG
 
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rJMFF027M17-          AAGCAGACTGTGGTGCCATGTAATAGTATGGAACATCAGTAGGACCTCCAACAGGAAGAG
                      ____________________________________________________________
consensus             AAGCAGACTGTGGTGCCATGTAATAGTATGGAACATCAGTAGGACCTCCAACAGGAAGAG
 
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rJMFF027M17-          TCCCTCTAGGGATAGATGCAAGCACCTCGTCTTTCAAATCCTCTCTTGGCACAATGTCAA
                      ____________________________________________________________
consensus             TCCCTCTAGGGATAGATGCAAGCACCTCGTCTTTCAAATCCTCTCTTGGCACAATGTCAA
 
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rJMFF027M17-          CCAAGAAGTCAAAGATGTCAGTCCTTGTGATGGCCGCCGCAATGTCATTTTTCTGGAGTG
                      ____________________________________________________________
consensus             CCAAGAAGTCAAAGATGTCAGTCCTTGTGATGGCCGCCGCAATGTCATTTTTCTGGAGTG
 
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rJMFF027M17-          TCCTCCTCTTATTCTCCTCGGTGTGGTTCCATGCACGCAATGTCAATTCAAGGATAAACA
JMFF027M17+                               GTGTGGTTCCATGCACGCAATGTCAATTCAAGGATAAACA
                      ____________________________________________________________
consensus             TCCTCCTCTTATTCTCCTCGGTGTGGTTCCATGCACGCAATGTCAATTCAAGGATAAACA
 
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rJMFF027M17-          TCTCACATGCCCGAGCAAAAACAACTGGTGCTTCTGCAGATATCATCCTAACATCCTCAT
JMFF027M17+           TCTCACATGCCCGAGCAAAAACAACTGGTGCTTCTGCAGATATCATCCTAACATCCTCAT
                      ____________________________________________________________
consensus             TCTCACATGCCCGAGCAAAAACAACTGGTGCTTCTGCAGATATCATCCTAACATCCTCAT
 
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rJMFF027M17-          CCGCCTTCATAATCTTCTTAATTCTAGCCAATGGCAAGCTATGGTTCTTGAAATCAG   
JMFF027M17+           CCGCCTTCATAATCTTCTTAATTCTAGCCAATGGCAAGCTATGGTTCTTGAAATCAGCAA
JMFF006B08+                                               AGCTATGGTTCTTGAAATCAGCAA
                      ____________________________________________________________
consensus             CCGCCTTCATAATCTTCTTAATTCTAGCCAATGGCAAGCTATGGTTCTTGAAATCAGCAA
 
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JMFF027M17+           CATGCTCGATGTCTTGGTATTGATTTGCCCAAAACTGTTGAAGTTGCTGCTGCAACTGTT
JMFF006B08+           CATGCTCGATGTNTTGGTATTGATTTGCCCAAAACTGTTGAAGTTGCTGCTGCAACTGTT
                      ____________________________________________________________
consensus             CATGCTCGATGTCTTGGTATTGATTTGCCCAAAACTGTTGAAGTTGCTGCTGCAACTGTT
 
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JMFF027M17+           GTTGTTGCTGTTGCTGTATGTGCTGATACGCAAGCTGAGCAGAGGAGGTAGGAAGCCCAA
JMFF006B08+           GTTGTTGCTGTTGCTGTATGTGCTGATACGCAAGCTGAGCAGAGGAGGTAGGAAGCCCAA
                      ____________________________________________________________
consensus             GTTGTTGCTGTTGCTGTATGTGCTGATACGCAAGCTGAGCAGAGGAGGTAGGAAGCCCAA
 
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JMFF027M17+           CGGTTTGAGGGGATTGGATAGCACCGGGAGATGCAGCAGGAATGGACACAGTCATCTGGT
JMFF006B08+           CGGTTTGAGGGGATTGGATAGCNCCGGGAGATGCAGCAGGAATGGACACAGTCATNTGGT
                      ____________________________________________________________
consensus             CGGTTTGAGGGGATTGGATAGCACCGGGAGATGCAGCAGGAATGGACACAGTCATCTGGT
 
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JMFF027M17+           TTGATTGATATGAAGGAGCTCCATATCCCATCGCAGCACCAGAGCTGGTCACAATTCCCA
JMFF006B08+           TTGATTGATATGAAGGAGCTCCATATCCCATCGCAGCACCAGAGCTGGTCACAATTCCCA
                      ____________________________________________________________
consensus             TTGATTGATATGAAGGAGCTCCATATCCCATCGCAGCACCAGAGCTGGTCACAATTCCCA
 
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JMFF027M17+           TACCTGGTGGTTGCCCATTTCCTTGATGATCCATTTCAAGCAAGTGTACTAGCTTCGAAA
JMFF006B08+           TACCTGGTGGTTGCCCATTTCCTTGATGATCCATTTCAAGCAAGTGTACTAGCTTCGAAA
                      ____________________________________________________________
consensus             TACCTGGTGGTTGCCCATTTCCTTGATGATCCATTTCAAGCAAGTGTACTAGCTTCGAAA
 
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JMFF027M17+           CTTGGATATTTTAGTCACTGTTACCTGTATGTAAGTTATAGTCTTTATATCTCCTCCAAG
JMFF006B08+           ATTGGATATTTTAGTCACTGTTACCTGTATGTAAGTTATAGTCTTTATATCTCCTCCAAG
                      ____________________________________________________________
consensus             CTTGGATATTTTAGTCACTGTTACCTGTATGTAAGTTATAGTCTTTATATCTCCTCCAAG
 
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JMFF027M17+           ATCAGCTATCGCTAGAACTGAGCTGGGTGATGATGGAAGGAGAGT               
JMFF006B08+           ATCAGCTATCGCTAAAACTGAGCTGGGTGATGATGGAAGGAGAGTGGGTGTTAGGGTTTT
                      ____________________________________________________________
consensus             ATCAGCTATCGCTAGAACTGAGCTGGGTGATGATGGAAGGAGAGTGGGTGTTAGGGTTTT