Contig 005895:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005K22Sequence490005895 (6)emb|CDP02934.1|3e-44unnamed protein product [Coffea canephora]680005895 (6)emb|CDP02934.1|2e-40unnamed protein product [Coffea canephora]
JMSF017A12Sequence483005895 (6)emb|CDP02934.1|5e-44unnamed protein product [Coffea canephora]729005895 (6)emb|CDP02934.1|4e-44unnamed protein product [Coffea canephora]
JMSF042E11Sequence820005895 (6)emb|CDP02934.1|4e-69unnamed protein product [Coffea canephora]726005895 (6)emb|CDP02934.1|7e-40unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF017A12-                        ATTTTGAAAGCGATTAGAGCTAAGCTGTGATAGAATATTCCAACCG
                      ____________________________________________________________
consensus                           ATTTTGAAAGCGATTAGAGCTAAGCTGTGATAGAATATTCCAACCG
 
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rJMSF017A12-          CTCCTCCAAACTTAAAATAGAGGATTAATTAATTATAATTTGCATAATAATTTGAATAAA
rJMSF042E11-                        AAATAGAGGATTAATTAATTATAATTTGCATAATAATTTGAATAAA
                      ____________________________________________________________
consensus             CTCCTCCAAACTTAAAATAGAGGATTAATTAATTATAATTTGCATAATAATTTGAATAAA
 
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rJMSF017A12-          AAAGAGAGGAAAGAAAAACTATAGTACACTAGAAACACTTTTAAACATGTCAATTGTTTT
rJMSF042E11-          AAAGAGAGGAAAGAAAAACTATAGTACACTAGAAACACTTTTAAACATGTCAATTGTTTT
rJMFF005K22-                                            ACACTTTTAAACATGTCAATTGTTTT
                      ____________________________________________________________
consensus             AAAGAGAGGAAAGAAAAACTATAGTACACTAGAAACACTTTTAAACATGTCAATTGTTTT
 
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rJMSF017A12-          CTTGATTCCTACCATATCAAGGGAACAACGCTGAATCTACCAACATCAGCGGCAGAATCT
rJMSF042E11-          CTTGATTCCTACCATATCAAGGGAACAACGCTGAATCTACCAACATCAGCGGCAGAATCT
rJMFF005K22-          CTTGATTCCTACCATATCAAGGGAACAACGCTGAATCTACCAACATCAGCGGCAGAATCT
                      ____________________________________________________________
consensus             CTTGATTCCTACCATATCAAGGGAACAACGCTGAATCTACCAACATCAGCGGCAGAATCT
 
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rJMSF017A12-          GCCGATGAAAACAAGGTATCAATGTCGGATTCTGATTCAACCTCCGTTCTCTTCGCAAAG
rJMSF042E11-          GCCGATGAAAACAAGGTATCAATGTCGGATTCTGATTCAACCTCCGTTCTCTTCGCAAAG
rJMFF005K22-          GCCGATGAAAACAAGGTATCAATGTCGGATTCTGATTCAACCTCCGTTCTCTTCGCAAAG
                      ____________________________________________________________
consensus             GCCGATGAAAACAAGGTATCAATGTCGGATTCTGATTCAACCTCCGTTCTCTTCGCAAAG
 
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rJMSF017A12-          CGGCCTTTGATTCGTGGCCGTGTTTCCGCATACGCCTTTCTGGAAGCGTAGCGTATCGTC
rJMSF042E11-          CGGCCTTTGATTCGTGGCCGTGTTTCCGCATACGCCTTTCTGGAAGCGTAGCGTATCGTC
rJMFF005K22-          CGGCCTTTGATTCGTGGCCGTGTTTCCGCATACGCCTTTCTGGAAGCGTAGCGTATCGTC
                      ____________________________________________________________
consensus             CGGCCTTTGATTCGTGGCCGTGTTTCCGCATACGCCTTTCTGGAAGCGTAGCGTATCGTC
 
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rJMSF017A12-          TTCTCGAACTTTCTGTTCTTCCTCTTCTCCCTGTATCTCAGCACCCGGGCCTCTCGATCC
rJMSF042E11-          TTCTCGAACTTTCTGTTCTTCCTCTTCTCCCTGTATCTCAGCACCCGGGCCTCTCGATCC
rJMFF005K22-          TTCTCGAACTTTCTGTTCTTCCTCTTCTCCCTGTATCTCAGCACCCGGGCCTCTCGATCC
                      ____________________________________________________________
consensus             TTCTCGAACTTTCTGTTCTTCCTCTTCTCCCTGTATCTCAGCACCCGGGCCTCTCGATCC
 
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rJMSF017A12-          ATTCCGTTCCATTGCGAGCCGCCTCTGGAATCCACGCTCCCGCCGCCGATGTTCCGGTAG
rJMSF042E11-          ATTCCGTTCCATTGCGAGCCGCCTCTGGAATCCACGCTCCCGCCGCCGATGTTCCGGTAG
rJMFF005K22-          ATTCCGTTCCATTGCGAGCCGCCTCTGGAATCCACGCTCCCGCCGCCGATGTTCCGGTAG
                      ____________________________________________________________
consensus             ATTCCGTTCCATTGCGAGCCGCCTCTGGAATCCACGCTCCCGCCGCCGATGTTCCGGTAG
 
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rJMSF017A12-          GATATCTCCGACACAGAGCTCCCGTCCGGGACCACTCCCACGTCTAAAGATGAGGAAACA
rJMSF042E11-          GATATCTCCGACACAGAGCTCCCGTCCGGGACCACTCCCACGTCTAAAGATGAGGAAACA
rJMFF005K22-          GATATCTCCGACACAGAGCTCCCGTCCGGGACCACTCCCACGTCTAAAGATGAGGAAACA
                      ____________________________________________________________
consensus             GATATCTCCGACACAGAGCTCCCGTCCGGGACCACTCCCACGTCTAAAGATGAGGAAACA
 
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rJMSF017A12-          CTTAAGGAAGGTTTGGTGAATCCGGAGTTGTAGGAAGTGAGGTTGGATCTTGTGAAATCG
rJMSF042E11-          CTTAAGGAAGGTTTGGTGAATCCGGAGTTGTAGGAAGTGAGGTTGGATCTTGTGAAATCG
rJMFF005K22-          CTTAAGGAAGGTTTGGTGAATCCGGAGTTGTAGGAAGTGAGGTTGGATCTTATGAAATCG
                      ____________________________________________________________
consensus             CTTAAGGAAGGTTTGGTGAATCCGGAGTTGTAGGAAGTGAGGTTGGATCTTGTGAAATCG
 
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rJMSF017A12-          ATCTCGAAATGTTTTTCTTGGGGTATGATTGGAGCGGACGTTTTGATGGTCTGGATTGGG
rJMSF042E11-          ATCTCGAAATGTTTTTCTTGGGGTATGATTGGAGCGGACGTTTTGATGGTCTGGATTGGG
rJMFF005K22-          ATCTCGAAATGTTTTTCTTGGGGTATGATTGGAGCGGACGTTTTGATGGTCTGGATTGGG
JMSF042E11+                               GGGTATGATTGGAGCGGACGTTTTGATGGTCTGGATTGGG
                      ____________________________________________________________
consensus             ATCTCGAAATGTTTTTCTTGGGGTATGATTGGAGCGGACGTTTTGATGGTCTGGATTGGG
 
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rJMSF017A12-          ACAACCCTGTCGGAATTGTACTGGTTTTGATGAGAATTTGATTCCCAGGAAACCGGGTAC
rJMSF042E11-          ACAACCCTGTCGGAATTGTACTGGTTTTGATGAGAATTTGATTCCCAGGAAACCGGGTAC
rJMFF005K22-          ACAACCCTGTCGGAATTGTACTGGTTTTGATGAGAATTTGATTCCCAGGAAACCGGGTAC
JMSF042E11+           ACAACCCTGTCGGAATTGTACTGGTTTTGATGAGAATTTGATTCCCAGGAAACCGGGTAC
                      ____________________________________________________________
consensus             ACAACCCTGTCGGAATTGTACTGGTTTTGATGAGAATTTGATTCCCAGGAAACCGGGTAC
 
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rJMSF017A12-          TCAAAATCGAGGAAGTTGTCGGA                                     
rJMSF042E11-          TCAAAATCGAGGAAGTTGTCGGAGTCGAAGAGCGAGAATTCCGCAGATTTCATCCCGCCG
rJMFF005K22-          TCAAAATCGAGGAAGTTGTCGGAGTCGAAGAGCGAGAATTCCGCAGATTTCATCCCGCCG
JMSF042E11+           TCAAAATCGAGGAAGTTGTCGGAGTCGAAGAGCGAGAATTCCGCAGATTTCATCCCGCCG
                      ____________________________________________________________
consensus             TCAAAATCGAGGAAGTTGTCGGAGTCGAAGAGCGAGAATTCCGCAGATTTCATCCCGCCG
 
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rJMSF042E11-          GCGGCGTTTTCCGGCA                                            
rJMFF005K22-          GCGGCGTTTTCCGGCAGCTTGGAGGANGTGATCGAAGCGGAANAAGTCCAGGGA      
JMSF042E11+           GCGGCGTTTTCCGGCAGCTTGGAGGAGGTGATCGAAGCGGAAGAAGTCCAGGGATCAGAG
                      ____________________________________________________________
consensus             GCGGCGTTTTCCGGCAGCTTGGAGGAGGTGATCGAAGCGGAAGAAGTCCAGGGATCAGAG
 
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JMSF042E11+           GCGAAATTGTCATGGGCGAAGTTCGGGGGGTTGGAATCGTTCATCGGAACCAAGAGAGTC
                      ____________________________________________________________
consensus             GCGAAATTGTCATGGGCGAAGTTCGGGGGGTTGGAATCGTTCATCGGAACCAAGAGAGTC
 
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JMSF042E11+           GCGGCGGTGGACTTGACCACGGACTCCGCCGTGTCATAGAACGGGGCCACGGGGACACGC
JMSF017A12+                                                               GGACACGC
JMFF005K22+                                                               GGACACGC
                      ____________________________________________________________
consensus             GCGGCGGTGGACTTGACCACGGACTCCGCCGTGTCATAGAACGGGGCCACGGGGACACGC
 
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JMSF042E11+           TCGTGGCGCTGAGCCAAAGGGTTAGCCGAGTGGATGTCGCGGTCACACGTGACACATAGC
JMSF017A12+           TCGTGGCGCTGAGCCAAAGGGTTAGCCGAGTGGATGTCGCGGTCACACGTGACACATAGC
JMFF005K22+           TCGTGGCGNTGAGCCAAAGGGTTAGCCGAGTGGATGTCGCGGTCACACGTGACACATAGC
                      ____________________________________________________________
consensus             TCGTGGCGCTGAGCCAAAGGGTTAGCCGAGTGGATGTCGCGGTCACACGTGACACATAGC
 
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JMSF042E11+           GCCGCCGCATCAGCCTTGCACGTGACCGCCGCCGGGGCGTGCTCGCAAACCTCACACACC
JMSF017A12+           GCCGCCGCATCAGCCTTGCACGTGACCGCCGCCGGGGCGTGCTCGCAAACCTCACACACC
JMFF005K22+           GCCGCCGCATCAGCCTTGCACGTGACCGCCGCCGGGGCGTGCTCGCAAACCTCACACACC
                      ____________________________________________________________
consensus             GCCGCCGCATCAGCCTTGCACGTGACCGCCGCCGGGGCGTGCTCGCAAACCTCACACACC
 
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JMSF042E11+           CACACACGGGCATGCTTCGACCCTAATTTGTTAGTAGCATGGACCTTGGCGTCACACTCA
JMSF017A12+           CACACACGGGCATGCTTCGACCCTAATTTGTTAGTAGCATGGACCTTGGCGTCACACTCA
JMFF005K22+           CACACACGGGCATGCTTCGACCCTAATTTGTTAGTAGCATGGACCTTGGCGTCACACTCA
                      ____________________________________________________________
consensus             CACACACGGGCATGCTTCGACCCTAATTTGTTAGTAGCATGGACCTTGGCGTCACACTCA
 
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JMSF042E11+           AGGCACATAAAAATCGCGTCCACGCGACAAAACACCAACGCCACAGCTACCTTGCAATAG
JMSF017A12+           AGGCACATAAAAATCGCGTCCACGCGACAAAACACCAACGCCACAGCTACCTTGCAATAG
JMFF005K22+           AGGCACATAAAAATCGCGTCCACGCGACAAAACACCAACGCCACAGCTACCTTGCAATAG
                      ____________________________________________________________
consensus             AGGCACATAAAAATCGCGTCCACGCGACAAAACACCAACGCCACAGCTACCTTGCAATAG
 
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JMSF042E11+           TCGCACGGTTTCGCCGCGGCGGCCGCACCCCACCCGCCAGACAAACATCGTGAGTTAATA
JMSF017A12+           TCGCACGGTTTCGCCGCGGCGGCCGCACCCCACCCGCCAGACAAACATCGTGAGTTAATA
JMFF005K22+           TCGCACGGTTTCGCCGCGGCGGCCGCACCCCACCCGCCAGACAAACATCGTGAGTTAATA
                      ____________________________________________________________
consensus             TCGCACGGTTTCGCCGCGGCGGCCGCACCCCACCCGCCAGACAAACATCGTGAGTTAATA
 
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JMSF042E11+           ACAGAATCACTACCACCACAACTACCAGGCAAACCTCGTGAATGAATAACAGAATCACCG
JMSF017A12+           ACAGAATCACTACCACCACAACTACCAGGCAAACCTCGTGAATGAATAACAGAATCACCG
JMFF005K22+           ACAGAATCACTACCACCACAACTACCAGGCAAACCTCGTGAATGAATAACAGAATCACCG
                      ____________________________________________________________
consensus             ACAGAATCACTACCACCACAACTACCAGGCAAACCTCGTGAATGAATAACAGAATCACCG
 
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JMSF042E11+           CCACCGCCGCAATTAGCAATAACCATATTTGGTTGATTGACTCAAGTATCTAAAAGAAGA
JMSF017A12+           CCACCGCCGCAATTAGCAATAACCATATTTGGTTGATTGACTCAAGTATCTAAAAGAAGA
JMFF005K22+           CCACCGCCGCAATTAGCAATAACCATATTTGGTTGATTGACTCAAGTATCTAAAAGAAGA
                      ____________________________________________________________
consensus             CCACCGCCGCAATTAGCAATAACCATATTTGGTTGATTGACTCAAGTATCTAAAAGAAGA
 
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JMSF042E11+           AATCTCTAGGAATAGAAATAAACAAATGGCTTAGGAGTATAGTAGTGGCAAGA       
JMSF017A12+           AATCTCTAGGAATAGAAATAAACAAATGGCTTAGGAGTATAGTAGTGGCAAGA       
JMFF005K22+           AATCTCTAGGAATAGAAATAAACAAATGGCTTAGGAGTATAGTAGTGGCAAGATGGAAAT
                      ____________________________________________________________
consensus             AATCTCTAGGAATAGAAATAAACAAATGGCTTAGGAGTATAGTAGTGGCAAGATGGAAAT