| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004G23 | Sequence | 222 | 005892 (6) | 380 | 002671 (7) | emb|CAN77628.1| | 6e-75 | hypothetical protein VITISV_029424 [Vitis vinifera] | |||
| JMFF040N10 | Sequence | 566 | 005892 (6) | ref|XP_008348693.1| | 4e-45 | PREDICTED: dihydroorotase, mitochondrial-like isoform X1 [Malus domestica] | 786 | 002671 (7) | emb|CAN77628.1| | 2e-73 | hypothetical protein VITISV_029424 [Vitis vinifera] |
| JMFF043D19 | Sequence | 633 | 005892 (6) | ref|XP_008348693.1| | 1e-44 | PREDICTED: dihydroorotase, mitochondrial-like isoform X1 [Malus domestica] | 628 | 002671 (7) | emb|CAN77628.1| | 2e-70 | hypothetical protein VITISV_029424 [Vitis vinifera] |
| JMSF025L15 | Sequence | 682 | 005892 (6) | ref|XP_002274917.2| | 2e-90 | PREDICTED: dihydroorotase, mitochondrial isoform X2 [Vitis vinifera] | 758 | 002671 (7) | emb|CAN77628.1| | 7e-114 | hypothetical protein VITISV_029424 [Vitis vinifera] |
| JMSF026L15 | Sequence | 566 | 005892 (6) | ref|XP_010656978.1| | 7e-70 | PREDICTED: dihydroorotase, mitochondrial isoform X1 [Vitis vinifera] | 814 | 002671 (7) | ref|XP_010656979.1| | 4e-119 | PREDICTED: dihydroorotase, mitochondrial isoform X3 [Vitis vinifera] emb|CBI2186 |
| JMSF051F11 | Sequence | 137 | 005892 (6) | 792 | 002671 (7) | ref|XP_010656979.1| | 9e-131 | PREDICTED: dihydroorotase, mitochondrial isoform X3 [Vitis vinifera] emb|CBI2186 | |||
This contig is upended
. : . : . : . : . : . :
JMSF025L15+ CGATCAAATACATCAACCTCTGGGCTAGTTACCTCTCCATGGACCAGAA
____________________________________________________________
consensus CGATCAAATACATCAACCTCTGGGCTAGTTACCTCTCCATGGACCAGAA
. : . : . : . : . : . :
JMSF026L15+ TGGCAAACATTTTCCAAAAAGATCAG
JMSF025L15+ GAGGCATATTTTGCTCAACCATTTCCTCGAGAACTGGCAAACATTTTCCAAAAAGATCAG
____________________________________________________________
consensus GAGGCATATTTTGCTCAACCATTTCCTCGAGAACTGGCAAACATTTTCCAAAAAGATCAG
. : . : . : . : . : . :
JMSF026L15+ TGACACCATCCTGAGAATTTGTTGTAGCACCAGCAGGATAAAGTTTTACAGCATATACTA
JMSF025L15+ TGACACCATCCTGAGAATTTGTTGTAGCACCAGCAGGATAAAGTTTTACAGCATATACTA
JMFF043D19+ AGCACCAGCAGGATAAAGTTTTACAGCATATACTA
____________________________________________________________
consensus TGACACCATCCTGAGAATTTGTTGTAGCACCAGCAGGATAAAGTTTTACAGCATATACTA
. : . : . : . : . : . :
JMSF026L15+ CTCCACTTTGCNTGGCTTGTTTAATTTCAAGAGGACTTGTTGTATCTGTCAAATATAGTG
JMSF025L15+ CTCCACTTTGCCTGGCTTGTTTAATTTCAAGAGGACTTGTTGTATCTGTCAAATATAGTG
JMFF040N10+ CTTGTTTAATTTCAAGAGGACTTGTTGTATCTGTCAAATATAGTG
JMFF043D19+ CTCCACTTTG-CTGGCTTGTTTAATTTCAAGAGGACTTGTTGTATCTGTCAAATATAGTG
____________________________________________________________
consensus CTCCACTTTGCCTGGCTTGTTTAATTTCAAGAGGACTTGTTGTATCTGTCAAATATAGTG
. : . : . : . : . : . :
JMSF026L15+ TCATAAGGGGCATAAAATTAGAATTAGGAGGCAATGCTTTTAAGATGGAATCCCGGTATG
JMSF025L15+ TCATAAGGGGCATAAAATTAGAATTAGGAGGCAATGCTTTTAAGATGGAATCCCGGTATG
JMFF040N10+ TCATAAGGGGCATAAAATTAGAATTAGGAGGCAATGCTTTTAAGATGGAATCCCGGTATG
JMFF043D19+ TCATAAGGGGCATAAAATTAGAATTAGGAGGCAATGCTTTNAAGATGGAATCCCGGTATG
____________________________________________________________
consensus TCATAAGGGGCATAAAATTAGAATTAGGAGGCAATGCTTTTAAGATGGAATCCCGGTATG
. : . : . : . : . : . :
JMSF026L15+ CAACAGCTGCAGCAGTGGTGGTGACAGGAGGCTTCAGATTTGGCATGATGATTGCCCTCC
JMSF025L15+ CAACAGCTGCAGCAGTGGTGGTGACAGGAGGCTTCAGATTTGGCATGATGATTGCCCTCC
JMFF040N10+ CAACAGCTGCAGCAGTGGTGGTGACAGGAGGCTTCAGATTTGGCATGATGATTGCCCTCC
JMFF043D19+ CAACAGCTGCAGCAGTGGTGGTGACAGGAGGCTTCAGATTTGGCATGATGATTGCCCTCC
____________________________________________________________
consensus CAACAGCTGCAGCAGTGGTGGTGACAGGAGGCTTCAGATTTGGCATGATGATTGCCCTCC
. : . : . : . : . : . :
JMSF026L15+ CGAAGTTACGTGCACTGTGAGAGACAACCGCTTCAAGAAGGTCNCCATCACGGAGATGAA
JMSF025L15+ CGAAGTTACGTGCACTGTGAGAGACAACCGCTTCAAGAAGGTCACCATCACGGAGATGAA
JMFF040N10+ CGAAGTTACGTGCACTGTGAGAGACAACCGCTTCAAGAAGGTCACCATCACGGAGATGAA
JMFF043D19+ CGAAGTTACGTGCACTGTGAGAGACAACCGCTTCAAGAAGGTCACCATCACGGAGATGAA
____________________________________________________________
consensus CGAAGTTACGTGCACTGTGAGAGACAACCGCTTCAAGAAGGTCACCATCACGGAGATGAA
. : . : . : . : . : . :
JMSF026L15+ GATGCCAATCATCAGGTTGTGTAATTGAGAGCTCCATTCTCACTCTATTTGCTTTCCTCT
JMSF025L15+ GATGCCAATCATCAGGTTGTGTAATTGAGAGCTCCATTCTCACTCTATTTGCTTTCCTCT
JMFF040N10+ GATGCCAATCATCAGGTTGTGTAATTGAGAGCTCCATTCTCACTCTATTTGCTTTCCTCT
JMFF043D19+ GATGCCAATCATCAGGTTGTGTAATTGAGAGCTCCATTCTCACTCTATTTGCTTTCCTCT
____________________________________________________________
consensus GATGCCAATCATCAGGTTGTGTAATTGAGAGCTCCATTCTCACTCTATTTGCTTTCCTCT
. : . : . : . : . : . :
JMSF026L15+ GATTTTGCCCACTAAATTTAGAAACTGGAAAAGTCAATGCCTTGCAAGGAAGCGATATGG
JMSF025L15+ GATTTTGCCCACTAAATTTAGAAACTGGAAAAGTCAATGCCTTGCAAGGAAGCGATATGG
JMFF040N10+ GATTTTGCCCACTAAATTTAGAAACTGGAAAAGTCAATGCCTTGCAAGGAAGCGATATGG
JMFF043D19+ GATTTTGCCCACTAAATTTAGAAACTGGAAAAGTCAATGCCTTGCAAGGAAGCGATATGG
____________________________________________________________
consensus GATTTTGCCCACTAAATTTAGAAACTGGAAAAGTCAATGCCTTGCAAGGAAGCGATATGG
. : . : . : . : . : . :
JMSF026L15+ CCTTCATCATATGGAAGCTAAAAAACAAGAACCATTCTCCTCAAANCTAAGAAGTTTAAC
JMSF025L15+ CCTTCATCATATGGAAGCTAAAAAACAAGAACCATTCTCCTCAAAACTAAGAAGTTTAAC
JMFF040N10+ CCTTCATCATATGGAAGCTAAAAAACAAGAACCATTCTCCTCAAAACTAAGAAGTTTAAC
JMFF043D19+ CCTTCATCATATGGAAGCTAAAAAACAAGAACCATTCTCCTCAAAACTAAGAAGTTTAAC
____________________________________________________________
consensus CCTTCATCATATGGAAGCTAAAAAACAAGAACCATTCTCCTCAAAACTAAGAAGTTTAAC
. : . : . : . : . : . :
JMSF026L15+ TGTCCACTGAACTTCAGATCATATNGGAAAGATTAAAAACTCCCAAGTCTGTAGCTTTCA
JMSF025L15+ TGTCCACTGAACTTCAGATCATATTGGAAAGATTAAAAACTCCCAAGTCTGTAGCTTTCA
JMFF040N10+ TGTCCACTGAACTTCAGATCATATTGGAAAGATTAAAAACTCCCAAGTCTGTAGCTTTCA
JMSF051F11+ CTGAACTTCAGATCATATTGGAAAGATTAAAAACTCCTAAGTCTGTAGCTTTCA
JMFF043D19+ TGTCCACTGAACTTCAGATCATATTGGAAAGATTAAAAACTCCCAAGTCTGTAGCTTTCA
JMFF004G23+ CTGAACTTCAGATCATATTGGAAAGATTAAAAACTCCCAAGTCTGTAGCTTTCA
____________________________________________________________
consensus TGTCCACTGAACTTCAGATCATATTGGAAAGATTAAAAACTCCCAAGTCTGTAGCTTTCA
. : . : . : . : . : . :
JMSF025L15+ TTAACTTCTGAGTATTACTCATCCAAGCAAGC
JMFF040N10+ TTAACTTCTGAGTATTACTCATCCAAGCAAGCACAAGAAAAGTTATACGGAGTAGATTTT
JMSF051F11+ TTAACTTCTGAGTATTACTCATCCAAGCAAGC
JMFF043D19+ TTAACTTCTGAGTATTACTCATCCAAGCAAGCACAAGAAAAGTTATACGGAGTAGATTTT
JMFF004G23+ TTAACTTCTGAGTATTACTCATCCAAGCAAGCACAAGAAAAGTTATACGGAGTAGATTTT
____________________________________________________________
consensus TTAACTTCTGAGTATTACTCATCCAAGCAAGCACAAGAAAAGTTATACGGAGTAGATTTT
. : . : . : . : . : . :
JMFF040N10+ ATCAGACATTCTCTCCGGCGAATCCAAAATATTGGAACGAT
JMFF043D19+ ATCAGACATTCTCTCCGGCGAATCCAAAATATTGGAACGAT
JMFF004G23+ ATCAGACATTCTCTCCGGCGAATCCAAAATATTGGAACGATGATACATGAGTAGATCTAC
____________________________________________________________
consensus ATCAGACATTCTCTCCGGCGAATCCAAAATATTGGAACGATGATACATGAGTAGATCTAC