Contig 005888:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004B14Sequence481005888 (3)751005364 (3)ref|XP_009770111.1|8e-86PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Nicotiana
JMFF009D24Sequence575005888 (3)ref|XP_009770111.1|1e-49PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Nicotiana790005364 (3)ref|XP_009770111.1|6e-93PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Nicotiana
JMFF011G21Sequence513005888 (3)ref|XP_009770111.1|3e-30PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Nicotiana724005364 (3)ref|XP_009770111.1|4e-71PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Nicotiana

Alignment

This contig is upended


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JMFF009D24+                             GGAAATGTAAAATTGTTGATTTCACAGATCTTGCATTGCGTC
                      ____________________________________________________________
consensus                               GGAAATGTAAAATTGTTGATTTCACAGATCTTGCATTGCGTC
 
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JMFF009D24+           TAAACTCATAATATAAATTTCCTTTTTCCGTAGCATTGCATTCTTTCTCTGATATAT-CC
JMFF011G21+                                  TTTTCCGTAGCATTGCATTCTTTCTCTGATATATCCC
                      ____________________________________________________________
consensus             TAAACTCATAATATAAATTTCCTTTTTCCGTAGCATTGCATTCTTTCTCTGATATATCCC
 
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JMFF009D24+           CCAGATTGAGGAATGTTTTCATAGTTCTTATACTGTTCAAGCCTAGTCTTTCTGTATTTC
JMFF011G21+           CCAGATTGAGGAATGTTTTCATAGTTCTTATACTGTTCAAGCCTAGTCTTTCTGTATTTC
                      ____________________________________________________________
consensus             CCAGATTGAGGAATGTTTTCATAGTTCTTATACTGTTCAAGCCTAGTCTTTCTGTATTTC
 
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JMFF009D24+           TCTCTTGTTATGCTAAGCCTTTCCCAGGGAATCCCTTGGATGTCTTTCCCTCTCCTGGCC
JMFF011G21+           TCTCTTGTTATGCTAAGCCTTTCCCAGGGAATCCCTTGGATGTCTTTCCCTCTCCTGGCC
JMFF004B14+                                                                      C
                      ____________________________________________________________
consensus             TCTCTTGTTATGCTAAGCCTTTCCCAGGGAATCCCTTGGATGTCTTTCCCTCTCCTGGCC
 
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JMFF009D24+           TCAGCAGCAGATGTATCTTGAAATTTATTGTTCATGTAGTCAAAATCATCCTCAGAGTCT
JMFF011G21+           TCAGCAGCAGATGTATCTTGAAATTTATTGTTCATGTAGTCAAAATCATCCTCAGAGTCT
JMFF004B14+           TCAGCAGCAGATGTATCTTGAAATTTATTGTTCATGTAGTCAAAATCATCCTCAGAGTCT
                      ____________________________________________________________
consensus             TCAGCAGCAGATGTATCTTGAAATTTATTGTTCATGTAGTCAAAATCATCCTCAGAGTCT
 
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JMFF009D24+           GAGGCAGCCATCTCCTCTCTGCCATGAAACTCGTCGTCCATATCATCATCTACATCCTCC
JMFF011G21+           GAGGCAGCCATCTCCTCTCTGCCATGAAACTCGTCGTCCATATCATCATCTACATCCTCC
JMFF004B14+           GAGGCAGCCATCTCCTCTCTGCCATGAAACTCGTCGTCCATATCATCATCTACATCCTCC
                      ____________________________________________________________
consensus             GAGGCAGCCATCTCCTCTCTGCCATGAAACTCGTCGTCCATATCATCATCTACATCCTCC
 
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JMFF009D24+           ATTTCATACTCATCGGCCATGTAATCAGCATCATCCCCTTGATGAGACATGATTTACTGT
JMFF011G21+           ATTTCATACTCATCGGCCATGTAATCAGCATCATCCCCTTGATGAGACATGATTTACTGT
JMFF004B14+           ATTTCATACTCATCGGCCATGTAATCAGCATCATCCCCTTGATGAGACATGATTTACTGT
                      ____________________________________________________________
consensus             ATTTCATACTCATCGGCCATGTAATCAGCATCATCCCCTTGATGAGACATGATTTACTGT
 
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JMFF009D24+           CAAACCTTAACGCAAATCGAAAGGGCTAAGGGAAAAAATGGTCGAGCTCCGTTGATCTCG
JMFF011G21+           CAAACCTTAACGCAAATCGAAAGGGCTAAGGGAAAAAATGGTCGAGCTCCGTTGATCTCG
JMFF004B14+           CAAACCTTAACGCAAATCGAAAGGGCTAAGGGAAAAAATGGTCGAGCTCCGTTGATCTCG
                      ____________________________________________________________
consensus             CAAACCTTAACGCAAATCGAAAGGGCTAAGGGAAAAAATGGTCGAGCTCCGTTGATCTCG
 
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JMFF009D24+           ATCACGAAATCGGGAAATTGGACATCACCATATATAAGAAGGTAATCAAAATTAGCGTAG
JMFF011G21+           ATCACGAAATCGGGAAATTGGACATCACCATATATAAGAAGGTAATCAAAATTAGCGTAG
JMFF004B14+           ATCACGAAATCGGGAAATTGGACATCACCATATATAAGAAGGTAATCAAAATTAGCGTAG
                      ____________________________________________________________
consensus             ATCACGAAATCGGGAAATTGGACATCACCATATATAAGAAGGTAATCAAAATTAGCGTAG
 
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JMFF009D24+           CGAGAAAAGGGAATTGCAGTTCCTGGCCAGCAGATCGCAAAAAGCCTCGGAG        
JMFF011G21+           CGAGAAAAGGGAATTGCAGTTCCTGGCCAGCAGATCGCAAAAAGCCTCGGAG        
JMFF004B14+           CGAGAAAAGGGAATTGCAGTTCCTGGCCAGCAGATCGCAAAAAGCCTCGGAGTTAGGGTT
                      ____________________________________________________________
consensus             CGAGAAAAGGGAATTGCAGTTCCTGGCCAGCAGATCGCAAAAAGCCTCGGAGTTAGGGTT
 
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JMFF004B14+           GGGTTTATCCGCGGGTGAGTCGTCCCTGTTAAGAAATGGGAAGGAAAGTGACAGGTTTGC
                      ____________________________________________________________
consensus             GGGTTTATCCGCGGGTGAGTCGTCCCTGTTAAGAAATGGGAAGGAAAGTGACAGGTTTGC
 
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JMFF004B14+           CGTAGAAATACAAGTCGGTTACGCACATTATACCCAATTGTGAATTGTGAATTGTGAATT
                      ____________________________________________________________
consensus             CGTAGAAATACAAGTCGGTTACGCACATTATACCCAATTGTGAATTGTGAATTGTGAATT