| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003I15 | Sequence | 613 | 005885 (5) | ref|XP_006341549.1| | 3e-60 | PREDICTED: T-complex protein 1 subunit delta-like [Solanum tuberosum] | 782 | 012458 (3) | ref|XP_009797191.1| | 1e-147 | PREDICTED: T-complex protein 1 subunit delta [Nicotiana sylvestris] |
| JMFF047D23 | Sequence | 612 | 005885 (5) | ref|XP_009797191.1| | 2e-78 | PREDICTED: T-complex protein 1 subunit delta [Nicotiana sylvestris] | 638 | 012458 (3) | gb|AAY41425.1| | 6e-63 | putative cytosolic chaperonin delta subunit [Ipomoea batatas] |
| JMSF004O05 | Sequence | 262 | 005885 (5) | emb|CBI15515.3| | 1e-04 | unnamed protein product [Vitis vinifera] | 213 | 007059 (3) | |||
| JMSF045G01 | Sequence | 710 | 005885 (5) | ref|XP_009797191.1| | 6e-88 | PREDICTED: T-complex protein 1 subunit delta [Nicotiana sylvestris] | 819 | 012458 (3) | ref|XP_006341549.1| | 6e-127 | PREDICTED: T-complex protein 1 subunit delta-like [Solanum tuberosum] |
| JMSF046E06 | Sequence | 759 | 005885 (5) | ref|XP_009797191.1| | 8e-99 | PREDICTED: T-complex protein 1 subunit delta [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
JMSF046E06+ AAA
____________________________________________________________
consensus AAA
. : . : . : . : . : . :
JMSF046E06+ ACCAAACCCTTTACCATCTCAGTATCATCAACCGTACCACCCAATTTCTTCACAATCTTA
JMSF045G01+ CTTCACAATCTTA
____________________________________________________________
consensus ACCAAACCCTTTACCATCTCAGTATCATCAACCGTACCACCCAATTTCTTCACAATCTTA
. : . : . : . : . : . :
JMSF046E06+ ATATCTCTTAAATCTACAAGGTCTGGTTTTGCAGGGTCAACAACAGAAAGCACAGAATCA
JMFF047D23+ AGGGTCAACAACAGAAAGCACAGAATCA
JMSF045G01+ ATATCTCTTAAATCTACAAGGTCTGGTTTTGCAGGGTCAACAACAGAAAGCACAGAATCA
____________________________________________________________
consensus ATATCTCTTAAATCTACAAGGTCTGGTTTTGCAGGGTCAACAACAGAAAGCACAGAATCA
. : . : . : . : . : . :
JMSF046E06+ ACAGCTAATGGAGCTAAAAGAGTTGAATACTGAGACACTACCTTACTGTTCAGCGCAGTA
JMFF047D23+ ACAGCTAATGGAGCTAAAAGAGTTGAATACTGAGACACTACCTTACTGTTCAGCGCAGTA
JMSF045G01+ ACAGCTAATGGAGCTAAAAGAGTTGAATACTGAGACACTACCTTACTGTTCAGCGCAGTA
JMFF003I15+ GTTCAGCGCAGTA
____________________________________________________________
consensus ACAGCTAATGGAGCTAAAAGAGTTGAATACTGAGACACTACCTTACTGTTCAGCGCAGTA
. : . : . : . : . : . :
JMSF046E06+ CTGGCCGATTTGATAAGCGAATCGCGGTCAGAGAGCTCAACAGGAATCGCCATAGCGGTA
JMFF047D23+ CTGGCCGATTTGATAAGCGAATCGCGGTCAGAGAGCTCAACAGGAATCGCCATAGCGGTA
JMSF045G01+ CTGGCCGATTTGATAAGCGAATCGCGGTCAGAGAGCTCAACAGGAATCGCCATAGCGGTA
JMFF003I15+ CTGGCCGATTTGATAAGCGAATCGCGGTCAGAGAGCTCAACAGGAATCGCCATAGCGGTA
____________________________________________________________
consensus CTGGCCGATTTGATAAGCGAATCGCGGTCAGAGAGCTCAACAGGAATCGCCATAGCGGTA
. : . : . : . : . : . :
JMSF046E06+ AGGACCTCAACAGCCTTGATAGAAGTCTTATGGAGCGATTCGGAGACAATAGTAGGATGG
JMFF047D23+ AGGACCTCAACAGCCTTGATAGAAGTCTTATGGAGCGATTCGGAGACAATAGTAGGATGG
JMSF045G01+ AGGACCTCAACAGCCTTGATAGAAGTCTTATGGAGCGATTCGGAGACAATAGTAGGATGG
JMFF003I15+ AGGACCTCAACAGCCTTGATAGAAGTCTTATGGAGCGATTCGGAGACAATAGTAGGATGG
____________________________________________________________
consensus AGGACCTCAACAGCCTTGATAGAAGTCTTATGGAGCGATTCGGAGACAATAGTAGGATGG
. : . : . : . : . : . :
JMSF046E06+ ATACCTGCTGAAAGAAGGGATAGGCATTGCTTTAGGAGAGCACCAGCAATGACGACGACG
JMFF047D23+ ATACCTGCTGAAAGAAGGGATAGGCATTGCTTTAGGAGAGCACCAGCAATGACGACGACG
JMSF045G01+ ATACCTGCTGAAAGAAGGGATAGGCATTGCTTTAGGAGAGCACCAGCAATGACGACGACG
JMFF003I15+ ATACCTGCTGAAAGAAGGGATAGGCATTGCTTTAGGAGAGCACCAGCAATGACGACGACG
____________________________________________________________
consensus ATACCTGCTGAAAGAAGGGATAGGCATTGCTTTAGGAGAGCACCAGCAATGACGACGACG
. : . : . : . : . : . :
JMSF046E06+ GTGGTAGTGCCGTCACCGGCGACGACGTCCTGCGATTTGGAGAGCTCAACGAGGAACTTC
JMFF047D23+ GTGGTAGTGCCGTCACCGGCGACGACGTCCTGCGATTTGGAGAGCTCAACGAGGAACTTC
JMSF045G01+ GTGGTAGTGCCGTCACCGGCGACGACGTCCTGCGATTTGGAGAGCTCAACGAGGAACTTC
JMFF003I15+ GTGGTAGTGCCGTCACCGGCGACGACGTCCTGCGATTTGGAGAGCTCAACGAGGAACTTC
____________________________________________________________
consensus GTGGTAGTGCCGTCACCGGCGACGACGTCCTGCGATTTGGAGAGCTCAACGAGGAACTTC
. : . : . : . : . : . :
JMSF046E06+ GCGGCAGGTTGGAGGACTTCCATCTTGTTAAGGATGGTGGCGCCATCGTTGGTGATGATG
JMFF047D23+ GCGGCAGGTTGGAGGACTTCCATCTTGTTAAGGATGGTGGCGCCATCGTTGGTGATGATG
JMSF045G01+ GCGGCAGGTTGGAGGACTTCCATCTTGTTAAGGATGGTGGCGCCATCGTTGGTGATGATG
JMFF003I15+ GCGGCAGGTTGGAGGACTTCCATCTTGTTAAGGATGGTGGCGCCATCGTTGGTGATGATG
____________________________________________________________
consensus GCGGCAGGTTGGAGGACTTCCATCTTGTTAAGGATGGTGGCGCCATCGTTGGTGATGATG
. : . : . : . : . : . :
JMSF046E06+ ACCTCGCCATTGGCCGTGGAGATCATCTTGTCCATTCCTTTGGGGCCAAGACTAGTCCGG
JMFF047D23+ ACCTCGCCATTGGCCGTGGAGATCATCTTGTCCATTCCTTTGGGGCCAAGACTAGTCCGG
JMSF045G01+ ACCTCGCCATTGGCCGTGGAGATCATCTTGTCCATTCCTTTGGGGCCAAGACTAGTCCGG
JMSF004O05+ GCCGTGGAGATCATCTTGTCCATTCCTTTGGGGCCAAGACTAGTCCGG
JMFF003I15+ ACCTCGCCATTGGCCGTGGAGATCATCTTGTCCATTCCTTTGGGGCCAAGACTAGTCCGG
____________________________________________________________
consensus ACCTCGCCATTGGCCGTGGAGATCATCTTGTCCATTCCTTTGGGGCCAAGACTAGTCCGG
. : . : . : . : . : . :
JMSF046E06+ ACGGCATCGGCCACCGCACGAGCCGCCGCGATGTTGGCCATGCGGATATCGTCCTTGCGC
JMFF047D23+ ACGGCATCGGCCACCGCACGAGCCGCCGCGATGTTGGCCATGCGGATATCGTCCTTGCGC
JMSF045G01+ ACGGCATCGGCCACCGCACGAGCCGCCGCGATGTTGGCCATGCGGATATCGTCCTTGCGC
JMSF004O05+ ACGGCATCGGCCACCGCACGAGCCGCCGCGATGTTGGCCATGCGGATATCGTCCTTGCGC
JMFF003I15+ ACGGCATCGGCCACCGCACGAGCCGCCGCGATGTTGGCCATGCGGATATCGTCCTTGCGC
____________________________________________________________
consensus ACGGCATCGGCCACCGCACGAGCCGCCGCGATGTTGGCCATGCGGATATCGTCCTTGCGC
. : . : . : . : . : . :
JMSF046E06+ TTGTTGTCCATGAAGGTTTCCGTCTTCGATGAGGACCCGGCGGCGCCTGGGGCAGCGACT
JMFF047D23+ TTGTTGTCCATGAAGGTTTCCGTCTTCGATGAGGACCCGGCGGCGCCTGGGGCAGCGACT
JMSF045G01+ TTGTTGTCCATGAAGGTTTCCGTCTTCGATGAGGACCCGGCGGCGCCTGGGGCAGCGACT
JMSF004O05+ TTGTTGTCCATGAAGGTTTCCGTCTTCGATGAGGACCCGGCGGCGCCTGGGGCAGCGACT
JMFF003I15+ TTGTTGTCCATGAAGGTTTCCGTCTTCGATGAGGACCCGGCGGCGCCTGGGGCAGCGACT
____________________________________________________________
consensus TTGTTGTCCATGAAGGTTTCCGTCTTCGATGAGGACCCGGCGGCGCCTGGGGCAGCGACT
. : . : . : . : . : . :
JMSF046E06+ ACTGCTGGAGATGCCATTGTAGATCGAGAAACTTCTGATCTCACACTTGAGAGAGAGTGA
JMFF047D23+ ACTGCTGGAGATGCCATTGTAGATCGAGAAACTTCTGATCTCAC
JMSF045G01+ ACTGCTGGAGATGCCATTGTAGATCGAGAAACTTCTGATCTCACACTTGAGAGAGAGTGA
JMSF004O05+ ACTGCTGGAGATGCCATTGTAGATCGAGAAACTTCTGATCTCACACTTGAGAGAGAGTGA
JMFF003I15+ ACTGCTGGAGATGCCATTGTAGATCGAGAAACTTCTGATCTCACACTTGAGAGAGAGTGA
____________________________________________________________
consensus ACTGCTGGAGATGCCATTGTAGATCGAGAAACTTCTGATCTCACACTTGAGAGAGAGTGA
. : . : . : . : . : . :
JMSF046E06+ TAGTGGAAAAATGAGGCAGAAGTGCAAAACCC
JMSF045G01+ TAGTGGAAAAATGAGGCAGAAGTGCAAAACCC
JMSF004O05+ TAGTGGAAAAATGAGGCAGAAGTGCAAAACCC
JMFF003I15+ TAGTGGAAAAATGAGGCAGAAGTGCAAAACCCTAGCACTGAGAAAAGTCGAAAACAATCT
____________________________________________________________
consensus TAGTGGAAAAATGAGGCAGAAGTGCAAAACCCTAGCACTGAGAAAAGTCGAAAACAATCT