Contig 005877:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001P18Sequence521005877 (2)ref|XP_002314066.1|1e-05hypothetical protein POPTR_0009s05960g [Populus trichocarpa] gb|EEE88021.1| hypo723011036 (4)ref|XP_006345387.1|291PREDICTED: uncharacterized protein LOC102596969 [Solanum tuberosum]
JMFF018B17Sequence555005877 (2)ref|XP_009764564.1|1e-15PREDICTED: pheophytinase, chloroplastic-like [Nicotiana sylvestris]782011036 (4)ref|XP_006345387.1|282PREDICTED: uncharacterized protein LOC102596969 [Solanum tuberosum]

Alignment

This contig is upended


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JMFF018B17+                                         TTCCATTCCCAGAAAGAACTGTCAATTGGA
                      ____________________________________________________________
consensus                                           TTCCATTCCCAGAAAGAACTGTCAATTGGA
 
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JMFF018B17+           GCTCCACAATCCCCATTAGATTCATCATCCGGTAAACTAGGAACAAAAACCTTAGGCACC
                      ____________________________________________________________
consensus             GCTCCACAATCCCCATTAGATTCATCATCCGGTAAACTAGGAACAAAAACCTTAGGCACC
 
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JMFF018B17+           ACCGCTTCCCCAGAATCACTCACAGTACCATCAACTACATATGAATCATAGTTTCCACTC
JMFF001P18+                              TCACAGTACCATCAACTACATATGAATCATAGTTTCCACTC
                      ____________________________________________________________
consensus             ACCGCTTCCCCAGAATCACTCACAGTACCATCAACTACATATGAATCATAGTTTCCACTC
 
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JMFF018B17+           AAGAGACCCGAACTAGATTCTTTAAGAGCACTGGCAATTGGATAACCTCGACTTCTCCGA
JMFF001P18+           AAGAGACCCGAACTAGATTCTTTAAGAGCACTGGCAATTGGATAACCTCGACTTCTCCGA
                      ____________________________________________________________
consensus             AAGAGACCCGAACTAGATTCTTTAAGAGCACTGGCAATTGGATAACCTCGACTTCTCCGA
 
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JMFF018B17+           ATTAGTTTCTTTGGCCTAAAATTACCCAAACCTGAGTGTCTCAAATCGCCAGATCGAATA
JMFF001P18+           ATTAGTTTCTTTGACCTAAAATTACCCAAACCTGAGTGTCTCAAATCGCCAGATCGAATA
                      ____________________________________________________________
consensus             ATTAGTTTCTTTGGCCTAAAATTACCCAAACCTGAGTGTCTCAAATCGCCAGATCGAATA
 
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JMFF018B17+           ACAGCAGCACAACACCAACTTCTACCTGGTCGTGTGGGAATCCTTAACTGAGTTAAACTC
JMFF001P18+           ACAGCAGCACAACACCAACTTCTACCTGGTCGTGTGGGAATCCTTAACTGAGTTAAACTC
                      ____________________________________________________________
consensus             ACAGCAGCACAACACCAACTTCTACCTGGTCGTGTGGGAATCCTTAACTGAGTTAAACTC
 
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JMFF018B17+           GGAGTTCTGTCAATCAATTCCCTCCTAACATTTACAACATAACAGCATGCCCCAGAATAA
JMFF001P18+           GGAGTTCTGTCAATCAATTCCCTCCTAACATTTACAACATAACAGCATGCCCCAGAATAA
                      ____________________________________________________________
consensus             GGAGTTCTGTCAATCAATTCCCTCCTAACATTTACAACATAACAGCATGCCCCAGAATAA
 
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JMFF018B17+           CAGGAAACCATTTCCATCATTGATATCGCCGTTCTTTAATCAGCTGAGAAAGATTTGAGT
JMFF001P18+           CAGGAAACCATTTCCATCATTGATATCGCCGTTCTTTAATCAGCTGAGAAAGATTTGAGT
                      ____________________________________________________________
consensus             CAGGAAACCATTTCCATCATTGATATCGCCGTTCTTTAATCAGCTGAGAAAGATTTGAGT
 
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JMFF018B17+           AATTAGCAAGACATCCAAGATTCTAAGAGAAAGGGGGTAGAAAGATTCGGGTTTGCTTTT
JMFF001P18+           AATTAGCAAGACATCCAAGATTCTAAGAGAAAGGGGGTAGAAAGATTCGGGTTTGCTTTT
                      ____________________________________________________________
consensus             AATTAGCAAGACATCCAAGATTCTAAGAGAAAGGGGGTAGAAAGATTCGGGTTTGCTTTT
 
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JMFF018B17+           CTGGGTACGTGTGTACATAGGATTAGATTCCAGATGAAGAAATAT               
JMFF001P18+           CTGGGTACGTGTGTACATAGGATTAGATTCCAGATGAAGAAATATGAAGTTGCTTACAGG
                      ____________________________________________________________
consensus             CTGGGTACGTGTGTACATAGGATTAGATTCCAGATGAAGAAATATGAAGTTGCTTACAGG
 
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JMFF001P18+           AAGGGGGTTCCTTTAAGAGCCAGGGAAAAGTTCAACAAACATCGGGAAGGTTTATTTGTC
                      ____________________________________________________________
consensus             AAGGGGGTTCCTTTAAGAGCCAGGGAAAAGTTCAACAAACATCGGGAAGGTTTATTTGTC