Contig 005872:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001A06Sequence572005872 (8)emb|CDO99748.1|2e-33unnamed protein product [Coffea canephora]774005872 (8)ref|XP_009760862.1|2e-46PREDICTED: GATA transcription factor 8-like [Nicotiana sylvestris] ref|XP_009760
JMFF010M17Sequence575005872 (8)ref|XP_009628969.1|3e-53PREDICTED: LOW QUALITY PROTEIN: GATA transcription factor 8-like [Nicotiana tom766005872 (8)ref|XP_010683872.1|2e-41PREDICTED: GATA transcription factor 8 [Beta vulgaris subsp. vulgaris]
JMFF011K10Sequence571005872 (8)ref|XP_009628969.1|2e-48PREDICTED: LOW QUALITY PROTEIN: GATA transcription factor 8-like [Nicotiana tom693005872 (8)ref|XP_010683872.1|1e-41PREDICTED: GATA transcription factor 8 [Beta vulgaris subsp. vulgaris]
JMSF045J17Sequence740005872 (8)ref|XP_009628969.1|2e-59PREDICTED: LOW QUALITY PROTEIN: GATA transcription factor 8-like [Nicotiana tom758005872 (8)ref|XP_009760862.1|7e-45PREDICTED: GATA transcription factor 8-like [Nicotiana sylvestris] ref|XP_009760

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF010M17- GATGAA
                      ____________________________________________________________
consensus GATGAA
 
. : . : . : . : . : . :
rJMFF010M17- CTGCAAAAGATTCCGGTGAAGCATGGGGGGTACAGCAAAGAACAAATCCTACCAAGAAAA
                      ____________________________________________________________
consensus CTGCAAAAGATTCCGGTGAAGCATGGGGGGTACAGCAAAGAACAAATCCTACCAAGAAAA
 
. : . : . : . : . : . :
rJMFF010M17- GCAAACCATAGCTGAGAATTGGTCTAAAAACAAATGAAATGAGACTCTGACCCAAACCTA
rJMFF011K10- ATAGCTGAGAATTGGTCTAAAAACAAATGAAATGAGACTCTGACCCAAACCTA
rJMSF045J17- GAAATGAGACTCTGACCCAAACCTA
rJMFF001A06- ATAGCTGAGAATTGGTCTAAAAACAAATGAAATGAGACTCTGACCCAAACCTA
                      ____________________________________________________________
consensus GCAAACCATAGCTGAGAATTGGTCTAAAAACAAATGAAATGAGACTCTGACCCAAACCTA
 
. : . : . : . : . : . :
rJMFF010M17- ATCATAATAATTCCAATAGACCTAAAACCAACACTACATTCATCACCTAAACCTCCACTT
rJMFF011K10- ATCATAATAATTCCAATAGACCTAAAACCAACACTACATTCATCACCTAAACCTCCACTT
rJMSF045J17- ATCATAATAATTCCAATAGACCTAAAACCAACACTACATTCATCACCTAAACCTCCACTT
rJMFF001A06- ATCATAATAATTCCAATAGACCTAAAACCAACACTACATTCATCACCTAAACCTCCACTT
                      ____________________________________________________________
consensus ATCATAATAATTCCAATAGACCTAAAACCAACACTACATTCATCACCTAAACCTCCACTT
 
. : . : . : . : . : . :
rJMFF010M17- TCAAATCTGCTAAAATATGTTTCTACCCACCAAACAGTTCTGTACAAAGAACCAATGAAA
rJMFF011K10- TCAAATCTGCTAAAATATGTTTCTACCCACCAAACAGTTCTGTACAAAGAACCAATGAAA
rJMSF045J17- TCAAATCTGCTAAAATATGTTTCTACCCACCAAACAGTTCTGTACAAAGAACCAATGAAA
rJMFF001A06- TCAAATCTGCTAAAATATGTTTCTACCCACCAAACAGTTCTGTACAAAGAACCAATGAAA
                      ____________________________________________________________
consensus TCAAATCTGCTAAAATATGTTTCTACCCACCAAACAGTTCTGTACAAAGAACCAATGAAA
 
. : . : . : . : . : . :
rJMFF010M17- TATGGGACATAACCTTAAACCAAAAATAAAATATTAACTGCTGCTGAAGCCTGAAGTTAC
rJMFF011K10- TATGGGACATAACCTTAAACCAAAAATAAAATATTAACTGCTGCTGAAGCCTGAAGTTAC
rJMSF045J17- TATGGGACATAACCTTAAACCAAAAATAAAATATTAACTGCTGCTGAAGCCTGAAGTTAC
rJMFF001A06- TATGGGACATAACCTTAAACCAAAAATAAAATATTAACTGCTGCTGAAGCCTGAAGTTAC
                      ____________________________________________________________
consensus TATGGGACATAACCTTAAACCAAAAATAAAATATTAACTGCTGCTGAAGCCTGAAGTTAC
 
. : . : . : . : . : . :
rJMFF010M17- AGGGGGGAGAGTTGCAGAGAAGGGAAGGGAAAAAACTCCTCTTAGACTACGAAAACTGCT
rJMFF011K10- AGGGGGGAGAGTTGCAGAGAAGGGAAGGGAAAAAACTCCTCTTAGACTACGAAAACTGCT
rJMSF045J17- AGGGGGGAGAGTTGCAGAGAAGGGAAGGGAAAAAACTCCTCTTAGACTACGAAAACTGCT
rJMFF001A06- AGGGGGGAGAGTTGCAGAGAAGGGAAGGGAAAAAACTCCTCTTAGACTACGAAAACTGCT
                      ____________________________________________________________
consensus AGGGGGGAGAGTTGCAGAGAAGGGAAGGGAAAAAACTCCTCTTAGACTACGAAAACTGCT
 
. : . : . : . : . : . :
rJMFF010M17- TCTCTGCTTTCGCCTTTCCCCTCCTCCCTCCCTCTTCACTTGATCTCGGGTGGAGCTACA
rJMFF011K10- TCTCTGCTTTCGCCTTTCCCCTCCTCCCTCCCTCTTCACTTGATCTCGGGTGGAGCTACA
rJMSF045J17- TCTCTGCTTTCGCCTTTCCCCTCCTCCCTCCCTCTTCACTTGATCTCGGGTGGAGCTACA
rJMFF001A06- TCTCTGCTTTCGCCTTTCCCCTCCTCCCTCCCCCTTCACTTGATCTCGGGTGGAGCTACA
                      ____________________________________________________________
consensus TCTCTGCTTTCGCCTTTCCCCTCCTCCCTCCCTCTTCACTTGATCTCGGGTGGAGCTACA
 
. : . : . : . : . : . :
rJMFF010M17- GAAGAAACCGGGGATTGCTCGAGGCTGGGGACCGCCTTGGTTCTCATCTCGACGACCTTC
rJMFF011K10- GAAGAAACCGGGGATTGCTCGAGGCTGGGGACCGCCTTGGTTCTCATCTCGACGACCTTC
rJMSF045J17- GAAGAAACCGGGGATTGCTCGAGGCTGGGGACCGCCTTGGTTCTCATCTCGACGACCTTC
rJMFF001A06- GAAGAAACCGGGGATTGCTCGAGGCTGGGGACCGCCTTGGTTCTCATCTCGACGACCTTC
                      ____________________________________________________________
consensus GAAGAAACCGGGGATTGCTCGAGGCTGGGGACCGCCTTGGTTCTCATCTCGACGACCTTC
 
. : . : . : . : . : . :
rJMFF010M17- TTGTGGGAGTTGGAGTGAAGAGACGGAACAAACGTAGGGCTGGCTGCCGGCCTGTACTCC
rJMFF011K10- TTGTGGGAGTTGGAGTGAAGAGACGGAACAAACGTAGGGCTGGCTGCCGGCCTGTACTCC
rJMSF045J17- TTGTGGGAGTTGGAGTGAAGAGACGGAACAAACGTAGGGCTGGCTGCCGGCCTGTACTCC
rJMFF001A06- TTGTGGGAGTTGGAGTGAAGAGACGGAACAAACGTAGGGCTGGCTGCCGGCCTGTACTCC
                      ____________________________________________________________
consensus TTGTGGGAGTTGGAGTGAAGAGACGGAACAAACGTAGGGCTGGCTGCCGGCCTGTACTCC
 
. : . : . : . : . : . :
rJMFF010M17- GGGAACAGCCTGCCCGACTTGTAACGAACCCCACACGCGTTGCAGAGCGTTTTAGGCCCC
rJMFF011K10- GGGAACAGCCTGCCCGACTTGTAACGAACCCCACACGCGTTGCAGAGCGTTTTAGGCCCC
rJMSF045J17- GGGAACAGCCTGCCCGACTTGTAACGAACCCCACACGCGTTGCAGAGCGTTTTAGGCCCC
rJMFF001A06- GGGAACAGCCTGCCCGACTTGTAACGAACCCCACACGCGTTGCAGAGCGTTTTAGGCCCC
                      ____________________________________________________________
consensus GGGAACAGCCTGCCCGACTTGTAACGAACCCCACACGCGTTGCAGAGCGTTTTAGGCCCC
 
. : . : . : . : . : . :
rJMFF010M17- ATGGGACCCGCCCTCCACTGAGGCGTCTTCGTGATCTCACAATGCATACATTTCCTGACT
rJMFF011K10- ATGGGACCCGCCCTCCACTGAGGCGTCTTCGTGATCTCACAATGCATACATTTCCTGACT
rJMSF045J17- ATGGGACCCGCCCTCCACTGAGGCGTCTTCGTGATCTCACAATGCATACATTTCCTGACT
rJMFF001A06- ATGGGACCCGCCCTCCACTGAGGCGTCTTCGTGATCTCACAATGCATACATTTCCTGACT
                      ____________________________________________________________
consensus ATGGGACCCGCCCTCCACTGAGGCGTCTTCGTGATCTCACAATGCATACATTTCCTGACT
 
. : . : . : . : . : . :
rJMFF010M17- GCCCCGCCCTGATCCTGATTCGGGGCGCCTGGATTANGCAAGGCGGGCATGGAGAACTTG
rJMFF011K10- GCCCCGCCCTGATCCTGATTCGGGGCGCCTGGATTANGCAAGGCGGGCATGGAGAACTTG
rJMSF045J17- GCCCCGCCCTGATCCTGATTCGGGGCGCCTGGATTAGGCAAGGCGGGCATGGAGAACTTG
rJMFF001A06- GCCCCGCCCTGATCCTGATTCGGGGCGCCTGGATTAGGCAAGGCGGGCATGGAGAACTTG
                      ____________________________________________________________
consensus GCCCCGCCCTGATCCTGATTCGGGGCGCCTGGATTAGGCAAGGCGGGCATGGAGAACTTG
 
. : . : . : . : . : . :
rJMFF010M17- ATCTTCTTTTTCTTCTTCTGCTCGCCCGCTCCTGCTGGTG
rJMFF011K10- ATCTTCTTTTTCTTCTTCTGCTCGCCCGCTCCTGCTGGTG
rJMSF045J17- ATCTTCTTTTTCTTCTTCTGCTCGCCCGCTCCTGCTGGTGGCCTCGGAACCTTCTTCGCA
rJMFF001A06- ATCTTCTTTTTCTTCTTCTGCTCGCCCGCTCCTGCTGGTGGCCTCGGAACCTTCTTCGCA
JMSF045J17+ TTCGCA
                      ____________________________________________________________
consensus ATCTTCTTTTTCTTCTTCTGCTCGCCCGCTCCTGCTGGTGGCCTCGGAACCTTCTTCGCA
 
. : . : . : . : . : . :
rJMSF045J17- GGCGAATCCGCAAAGCTCTCCACCTGTGGGGTCTCGATAAGCTGCATCACCGG
rJMFF001A06- GGCGAATCCGCAAAGCTCTCCACCTGTGGGGTCTCGATAAGCTGCATCACCGGCCTGGGA
JMSF045J17+ GGCGAATCCGCAAAGCTCTCCACCTGTGGGGTCTCGATAAGCTGCATCACCGGCCTGGGA
                      ____________________________________________________________
consensus GGCGAATCCGCAAAGCTCTCCACCTGTGGGGTCTCGATAAGCTGCATCACCGGCCTGGGA
 
. : . : . : . : . : . :
rJMFF001A06- T
JMSF045J17+ TTGAACGCCACCGGGCGGGGGCGCTTGCTGCGAGCACGCTGCGCCCCGCGCTGGCTCGGG
JMFF011K10+ TGCGAGCACGCTGCGCCCCGCGCTGGCTCGGG
JMFF001A06+ TGCGAGCACGCTGCGCCCCGCGCTGGCTCGGG
                      ____________________________________________________________
consensus TTGAACGCCACCGGGCGGGGGCGCTTGCTGCGAGCACGCTGCGCCCCGCGCTGGCTCGGG
 
. : . : . : . : . : . :
JMSF045J17+ CTCAGGGGCATCGCCTTTCCCCCCGAGCACGACGAATTACTGCTACTGCTGCTGCTGCTA
JMFF011K10+ CTCAGGGGCATCGCCTTTCCCCCCGAGCACGACGAATTACTGCTACTGCTGCTGCTGCTA
JMFF001A06+ CTCAGGGGCATCGCCTTTCCCCCCGAGCACGACGAATTACTGCTACTGCTGCTGCTGCTA
                      ____________________________________________________________
consensus CTCAGGGGCATCGCCTTTCCCCCCGAGCACGACGAATTACTGCTACTGCTGCTGCTGCTA
 
. : . : . : . : . : . :
JMSF045J17+ CTGCTCTCGAGAACCGAAATCGGGCTCGAAGCAGCCTGGAATTTCTTGTCCGATTCCGGC
JMFF011K10+ CTGCTNTCGAGAACCGAAATCGGGCTCGAAGCAGCCTGGAATTTCTTGTCCGATTCCGGC
JMFF001A06+ CTGCTCTCGAGAACCGAAATCGGGCTCGAAGCAGCCTGGAATTTCTTGTCCGATTCCGGC
                      ____________________________________________________________
consensus CTGCTCTCGAGAACCGAAATCGGGCTCGAAGCAGCCTGGAATTTCTTGTCCGATTCCGGC
 
. : . : . : . : . : . :
JMSF045J17+ TTCGGGTTGAGTGGATAGTTCTCTTTGCCAAGAGTTAGCCCTCCATCCGAGAATGACTCT
JMFF010M17+ GTTCTCTTTGCCAAGAGTTAGCCCTCCATCCGAGAATGACTCT
JMFF011K10+ TTCGGGTTGAGTGGATAGTTCTCTTTGCCAAGAGTTAGCCCTCCATCCGAGAATGACTCT
JMFF001A06+ TTCGGGTTGAGTGGATAGTTCTCTTTGCCAAGAGTTAGCCCTCCATCCGAGAATGACTCT
                      ____________________________________________________________
consensus TTCGGGTTGAGTGGATAGTTCTCTTTGCCAAGAGTTAGCCCTCCATCCGAGAATGACTCT
 
. : . : . : . : . : . :
JMSF045J17+ TCCACAAACGCTGAAAGCCATTCCAGCTGCACAATATCCTCGTACGGAACTGAGAGCTCG
JMFF010M17+ TCCACAAACGCTGAAAGCCATTCCAGCTGCACAATATCCTCGTACGGAACTGAGAGCTCG
JMFF011K10+ TCCACAAACGCTGAAAGCCATTCCAGCTGCACAATATCCTCGTACGGAACTGAGAGCTCG
JMFF001A06+ TCCACAAACGCTGAAAGCCATTCCAGCTGCACAATATCCTCGTACGGAACTGAGAGCTCG
                      ____________________________________________________________
consensus TCCACAAACGCTGAAAGCCATTCCAGCTGCACAATATCCTCGTACGGAACTGAGAGCTCG
 
. : . : . : . : . : . :
JMSF045J17+ GCGGAGAGGTCAGAAGCGGAATGGCTGTGGGCGGCGGAGAAAATGGGGTCGGAATCCGGC
JMFF010M17+ GCGGAGAGGTCAGAAGCGGAATGGCTGTGGGCGGCGGAGAAAATGGGGTCGGAATCCGGC
JMFF011K10+ GCGGAGAGGTCAGAAGCGGAATGGCTGTGGGCGGCGGAGAAAATGGGGTCGGAATCCGGC
JMFF001A06+ GCGGAGAGGTCAGAAGCGGAATGGCTGTGGGCGGCGGAGAAAATGGGGTCGGAATCCGGC
                      ____________________________________________________________
consensus GCGGAGAGGTCAGAAGCGGAATGGCTGTGGGCGGCGGAGAAAATGGGGTCGGAATCCGGC
 
. : . : . : . : . : . :
JMSF045J17+ AACGGCTCGTCCCAAATGCTGGGGAAATTGGCGCAGTCGCCGGAGCCGACACCGCCGC-A
JMFF010M17+ AACGGCTCGTCCCAAATGCTGGGGAAATTGGCGCAGTCGCCGGAGCCGACACCGCCGC-A
JMFF011K10+ AACGGCTCGTCCCAAATGCTGGGGAAATTGGCGCAGTCGCCGGAGCCGACACCGCCGC-A
JMFF001A06+ AACGGCTCGTCCCAAATGCTGGGGAAATTGGCGCAGTCGCCGGAGCCGACACCGCCGCAA
                      ____________________________________________________________
consensus AACGGCTCGTCCCAAATGCTGGGGAAATTGGCGCAGTCGCCGGAGCCGACACCGCCGC-A
 
. : . : . : . : . : . :
JMSF045J17+ CTCATTCTCCGGGGGGAAGTCGATAAGGTCGTCAATGTGATCGAAGAAGCTGCCGCAGTC
JMFF010M17+ CTCATTCTCCGGGGGGAAGTCGATAAGGTCGTCAATGTGATCGAAGAAGCTGCCGCAGTC
JMFF011K10+ CTCATTCTCCGGGGGGAAGTCGATAAGGTCGTCAATGTGATCGAAGAAGCTGCCGCAGTC
JMFF001A06+ CTCATTCTCCGGGGGGAAGTCGATAAGGTCGTCAATGTGATCGAAGAAGCTGCCGCAGTC
                      ____________________________________________________________
consensus CTCATTCTCCGGGGGGAAGTCGATAAGGTCGTCAATGTGATCGAAGAAGCTGCCGCAGTC
 
. : . : . : . : . : . :
JMSF045J17+ TATTTCATCGACGAAATTTGA
JMFF010M17+ TATTTCATCGACGAAATTTGAATCCATACTTGAACCTACAAAACTTTAACCTTTGGGAAG
JMFF011K10+ TATTTCATCGACGAAATTTGAATCCATACTTGAACCTACAAAACTTTAACCTTTGGGAAG
JMFF001A06+ TATTTCATCGACGAAATTTGAATCCATACTTGAACCTACAAAACTTTAACCTTTGGGAAG
                      ____________________________________________________________
consensus TATTTCATCGACGAAATTTGAATCCATACTTGAACCTACAAAACTTTAACCTTTGGGAAG
 
. : . : . : . : . : . :
JMFF010M17+ AAAGAAGGGGGGATTTTGACTGGTTTGAGGAGACGAAAGAAAAC
JMFF011K10+ AAAGAAGGGGGGATTTTGACTGGTTTGAGGAGACGAAAGAAAACAAGCGGTGTTGGAGAT
JMFF001A06+ AAAGAAGGGGGGATTTTGACTGGTTTGAGGAGACGAAAGAAAACAAGCGGTGTTGGAGAT
                      ____________________________________________________________
consensus AAAGAAGGGGGGATTTTGACTGGTTTGAGGAGACGAAAGAAAACAAGCGGTGTTGGAGAT