| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001A06 | Sequence | 572 | 005872 (8) | emb|CDO99748.1| | 2e-33 | unnamed protein product [Coffea canephora] | 774 | 005872 (8) | ref|XP_009760862.1| | 2e-46 | PREDICTED: GATA transcription factor 8-like [Nicotiana sylvestris] ref|XP_009760 |
| JMFF010M17 | Sequence | 575 | 005872 (8) | ref|XP_009628969.1| | 3e-53 | PREDICTED: LOW QUALITY PROTEIN: GATA transcription factor 8-like [Nicotiana tom | 766 | 005872 (8) | ref|XP_010683872.1| | 2e-41 | PREDICTED: GATA transcription factor 8 [Beta vulgaris subsp. vulgaris] |
| JMFF011K10 | Sequence | 571 | 005872 (8) | ref|XP_009628969.1| | 2e-48 | PREDICTED: LOW QUALITY PROTEIN: GATA transcription factor 8-like [Nicotiana tom | 693 | 005872 (8) | ref|XP_010683872.1| | 1e-41 | PREDICTED: GATA transcription factor 8 [Beta vulgaris subsp. vulgaris] |
| JMSF045J17 | Sequence | 740 | 005872 (8) | ref|XP_009628969.1| | 2e-59 | PREDICTED: LOW QUALITY PROTEIN: GATA transcription factor 8-like [Nicotiana tom | 758 | 005872 (8) | ref|XP_009760862.1| | 7e-45 | PREDICTED: GATA transcription factor 8-like [Nicotiana sylvestris] ref|XP_009760 |
This contig is upended
. : . : . : . : . : . :
rJMFF010M17- GATGAA
____________________________________________________________
consensus GATGAA
. : . : . : . : . : . :
rJMFF010M17- CTGCAAAAGATTCCGGTGAAGCATGGGGGGTACAGCAAAGAACAAATCCTACCAAGAAAA
____________________________________________________________
consensus CTGCAAAAGATTCCGGTGAAGCATGGGGGGTACAGCAAAGAACAAATCCTACCAAGAAAA
. : . : . : . : . : . :
rJMFF010M17- GCAAACCATAGCTGAGAATTGGTCTAAAAACAAATGAAATGAGACTCTGACCCAAACCTA
rJMFF011K10- ATAGCTGAGAATTGGTCTAAAAACAAATGAAATGAGACTCTGACCCAAACCTA
rJMSF045J17- GAAATGAGACTCTGACCCAAACCTA
rJMFF001A06- ATAGCTGAGAATTGGTCTAAAAACAAATGAAATGAGACTCTGACCCAAACCTA
____________________________________________________________
consensus GCAAACCATAGCTGAGAATTGGTCTAAAAACAAATGAAATGAGACTCTGACCCAAACCTA
. : . : . : . : . : . :
rJMFF010M17- ATCATAATAATTCCAATAGACCTAAAACCAACACTACATTCATCACCTAAACCTCCACTT
rJMFF011K10- ATCATAATAATTCCAATAGACCTAAAACCAACACTACATTCATCACCTAAACCTCCACTT
rJMSF045J17- ATCATAATAATTCCAATAGACCTAAAACCAACACTACATTCATCACCTAAACCTCCACTT
rJMFF001A06- ATCATAATAATTCCAATAGACCTAAAACCAACACTACATTCATCACCTAAACCTCCACTT
____________________________________________________________
consensus ATCATAATAATTCCAATAGACCTAAAACCAACACTACATTCATCACCTAAACCTCCACTT
. : . : . : . : . : . :
rJMFF010M17- TCAAATCTGCTAAAATATGTTTCTACCCACCAAACAGTTCTGTACAAAGAACCAATGAAA
rJMFF011K10- TCAAATCTGCTAAAATATGTTTCTACCCACCAAACAGTTCTGTACAAAGAACCAATGAAA
rJMSF045J17- TCAAATCTGCTAAAATATGTTTCTACCCACCAAACAGTTCTGTACAAAGAACCAATGAAA
rJMFF001A06- TCAAATCTGCTAAAATATGTTTCTACCCACCAAACAGTTCTGTACAAAGAACCAATGAAA
____________________________________________________________
consensus TCAAATCTGCTAAAATATGTTTCTACCCACCAAACAGTTCTGTACAAAGAACCAATGAAA
. : . : . : . : . : . :
rJMFF010M17- TATGGGACATAACCTTAAACCAAAAATAAAATATTAACTGCTGCTGAAGCCTGAAGTTAC
rJMFF011K10- TATGGGACATAACCTTAAACCAAAAATAAAATATTAACTGCTGCTGAAGCCTGAAGTTAC
rJMSF045J17- TATGGGACATAACCTTAAACCAAAAATAAAATATTAACTGCTGCTGAAGCCTGAAGTTAC
rJMFF001A06- TATGGGACATAACCTTAAACCAAAAATAAAATATTAACTGCTGCTGAAGCCTGAAGTTAC
____________________________________________________________
consensus TATGGGACATAACCTTAAACCAAAAATAAAATATTAACTGCTGCTGAAGCCTGAAGTTAC
. : . : . : . : . : . :
rJMFF010M17- AGGGGGGAGAGTTGCAGAGAAGGGAAGGGAAAAAACTCCTCTTAGACTACGAAAACTGCT
rJMFF011K10- AGGGGGGAGAGTTGCAGAGAAGGGAAGGGAAAAAACTCCTCTTAGACTACGAAAACTGCT
rJMSF045J17- AGGGGGGAGAGTTGCAGAGAAGGGAAGGGAAAAAACTCCTCTTAGACTACGAAAACTGCT
rJMFF001A06- AGGGGGGAGAGTTGCAGAGAAGGGAAGGGAAAAAACTCCTCTTAGACTACGAAAACTGCT
____________________________________________________________
consensus AGGGGGGAGAGTTGCAGAGAAGGGAAGGGAAAAAACTCCTCTTAGACTACGAAAACTGCT
. : . : . : . : . : . :
rJMFF010M17- TCTCTGCTTTCGCCTTTCCCCTCCTCCCTCCCTCTTCACTTGATCTCGGGTGGAGCTACA
rJMFF011K10- TCTCTGCTTTCGCCTTTCCCCTCCTCCCTCCCTCTTCACTTGATCTCGGGTGGAGCTACA
rJMSF045J17- TCTCTGCTTTCGCCTTTCCCCTCCTCCCTCCCTCTTCACTTGATCTCGGGTGGAGCTACA
rJMFF001A06- TCTCTGCTTTCGCCTTTCCCCTCCTCCCTCCCCCTTCACTTGATCTCGGGTGGAGCTACA
____________________________________________________________
consensus TCTCTGCTTTCGCCTTTCCCCTCCTCCCTCCCTCTTCACTTGATCTCGGGTGGAGCTACA
. : . : . : . : . : . :
rJMFF010M17- GAAGAAACCGGGGATTGCTCGAGGCTGGGGACCGCCTTGGTTCTCATCTCGACGACCTTC
rJMFF011K10- GAAGAAACCGGGGATTGCTCGAGGCTGGGGACCGCCTTGGTTCTCATCTCGACGACCTTC
rJMSF045J17- GAAGAAACCGGGGATTGCTCGAGGCTGGGGACCGCCTTGGTTCTCATCTCGACGACCTTC
rJMFF001A06- GAAGAAACCGGGGATTGCTCGAGGCTGGGGACCGCCTTGGTTCTCATCTCGACGACCTTC
____________________________________________________________
consensus GAAGAAACCGGGGATTGCTCGAGGCTGGGGACCGCCTTGGTTCTCATCTCGACGACCTTC
. : . : . : . : . : . :
rJMFF010M17- TTGTGGGAGTTGGAGTGAAGAGACGGAACAAACGTAGGGCTGGCTGCCGGCCTGTACTCC
rJMFF011K10- TTGTGGGAGTTGGAGTGAAGAGACGGAACAAACGTAGGGCTGGCTGCCGGCCTGTACTCC
rJMSF045J17- TTGTGGGAGTTGGAGTGAAGAGACGGAACAAACGTAGGGCTGGCTGCCGGCCTGTACTCC
rJMFF001A06- TTGTGGGAGTTGGAGTGAAGAGACGGAACAAACGTAGGGCTGGCTGCCGGCCTGTACTCC
____________________________________________________________
consensus TTGTGGGAGTTGGAGTGAAGAGACGGAACAAACGTAGGGCTGGCTGCCGGCCTGTACTCC
. : . : . : . : . : . :
rJMFF010M17- GGGAACAGCCTGCCCGACTTGTAACGAACCCCACACGCGTTGCAGAGCGTTTTAGGCCCC
rJMFF011K10- GGGAACAGCCTGCCCGACTTGTAACGAACCCCACACGCGTTGCAGAGCGTTTTAGGCCCC
rJMSF045J17- GGGAACAGCCTGCCCGACTTGTAACGAACCCCACACGCGTTGCAGAGCGTTTTAGGCCCC
rJMFF001A06- GGGAACAGCCTGCCCGACTTGTAACGAACCCCACACGCGTTGCAGAGCGTTTTAGGCCCC
____________________________________________________________
consensus GGGAACAGCCTGCCCGACTTGTAACGAACCCCACACGCGTTGCAGAGCGTTTTAGGCCCC
. : . : . : . : . : . :
rJMFF010M17- ATGGGACCCGCCCTCCACTGAGGCGTCTTCGTGATCTCACAATGCATACATTTCCTGACT
rJMFF011K10- ATGGGACCCGCCCTCCACTGAGGCGTCTTCGTGATCTCACAATGCATACATTTCCTGACT
rJMSF045J17- ATGGGACCCGCCCTCCACTGAGGCGTCTTCGTGATCTCACAATGCATACATTTCCTGACT
rJMFF001A06- ATGGGACCCGCCCTCCACTGAGGCGTCTTCGTGATCTCACAATGCATACATTTCCTGACT
____________________________________________________________
consensus ATGGGACCCGCCCTCCACTGAGGCGTCTTCGTGATCTCACAATGCATACATTTCCTGACT
. : . : . : . : . : . :
rJMFF010M17- GCCCCGCCCTGATCCTGATTCGGGGCGCCTGGATTANGCAAGGCGGGCATGGAGAACTTG
rJMFF011K10- GCCCCGCCCTGATCCTGATTCGGGGCGCCTGGATTANGCAAGGCGGGCATGGAGAACTTG
rJMSF045J17- GCCCCGCCCTGATCCTGATTCGGGGCGCCTGGATTAGGCAAGGCGGGCATGGAGAACTTG
rJMFF001A06- GCCCCGCCCTGATCCTGATTCGGGGCGCCTGGATTAGGCAAGGCGGGCATGGAGAACTTG
____________________________________________________________
consensus GCCCCGCCCTGATCCTGATTCGGGGCGCCTGGATTAGGCAAGGCGGGCATGGAGAACTTG
. : . : . : . : . : . :
rJMFF010M17- ATCTTCTTTTTCTTCTTCTGCTCGCCCGCTCCTGCTGGTG
rJMFF011K10- ATCTTCTTTTTCTTCTTCTGCTCGCCCGCTCCTGCTGGTG
rJMSF045J17- ATCTTCTTTTTCTTCTTCTGCTCGCCCGCTCCTGCTGGTGGCCTCGGAACCTTCTTCGCA
rJMFF001A06- ATCTTCTTTTTCTTCTTCTGCTCGCCCGCTCCTGCTGGTGGCCTCGGAACCTTCTTCGCA
JMSF045J17+ TTCGCA
____________________________________________________________
consensus ATCTTCTTTTTCTTCTTCTGCTCGCCCGCTCCTGCTGGTGGCCTCGGAACCTTCTTCGCA
. : . : . : . : . : . :
rJMSF045J17- GGCGAATCCGCAAAGCTCTCCACCTGTGGGGTCTCGATAAGCTGCATCACCGG
rJMFF001A06- GGCGAATCCGCAAAGCTCTCCACCTGTGGGGTCTCGATAAGCTGCATCACCGGCCTGGGA
JMSF045J17+ GGCGAATCCGCAAAGCTCTCCACCTGTGGGGTCTCGATAAGCTGCATCACCGGCCTGGGA
____________________________________________________________
consensus GGCGAATCCGCAAAGCTCTCCACCTGTGGGGTCTCGATAAGCTGCATCACCGGCCTGGGA
. : . : . : . : . : . :
rJMFF001A06- T
JMSF045J17+ TTGAACGCCACCGGGCGGGGGCGCTTGCTGCGAGCACGCTGCGCCCCGCGCTGGCTCGGG
JMFF011K10+ TGCGAGCACGCTGCGCCCCGCGCTGGCTCGGG
JMFF001A06+ TGCGAGCACGCTGCGCCCCGCGCTGGCTCGGG
____________________________________________________________
consensus TTGAACGCCACCGGGCGGGGGCGCTTGCTGCGAGCACGCTGCGCCCCGCGCTGGCTCGGG
. : . : . : . : . : . :
JMSF045J17+ CTCAGGGGCATCGCCTTTCCCCCCGAGCACGACGAATTACTGCTACTGCTGCTGCTGCTA
JMFF011K10+ CTCAGGGGCATCGCCTTTCCCCCCGAGCACGACGAATTACTGCTACTGCTGCTGCTGCTA
JMFF001A06+ CTCAGGGGCATCGCCTTTCCCCCCGAGCACGACGAATTACTGCTACTGCTGCTGCTGCTA
____________________________________________________________
consensus CTCAGGGGCATCGCCTTTCCCCCCGAGCACGACGAATTACTGCTACTGCTGCTGCTGCTA
. : . : . : . : . : . :
JMSF045J17+ CTGCTCTCGAGAACCGAAATCGGGCTCGAAGCAGCCTGGAATTTCTTGTCCGATTCCGGC
JMFF011K10+ CTGCTNTCGAGAACCGAAATCGGGCTCGAAGCAGCCTGGAATTTCTTGTCCGATTCCGGC
JMFF001A06+ CTGCTCTCGAGAACCGAAATCGGGCTCGAAGCAGCCTGGAATTTCTTGTCCGATTCCGGC
____________________________________________________________
consensus CTGCTCTCGAGAACCGAAATCGGGCTCGAAGCAGCCTGGAATTTCTTGTCCGATTCCGGC
. : . : . : . : . : . :
JMSF045J17+ TTCGGGTTGAGTGGATAGTTCTCTTTGCCAAGAGTTAGCCCTCCATCCGAGAATGACTCT
JMFF010M17+ GTTCTCTTTGCCAAGAGTTAGCCCTCCATCCGAGAATGACTCT
JMFF011K10+ TTCGGGTTGAGTGGATAGTTCTCTTTGCCAAGAGTTAGCCCTCCATCCGAGAATGACTCT
JMFF001A06+ TTCGGGTTGAGTGGATAGTTCTCTTTGCCAAGAGTTAGCCCTCCATCCGAGAATGACTCT
____________________________________________________________
consensus TTCGGGTTGAGTGGATAGTTCTCTTTGCCAAGAGTTAGCCCTCCATCCGAGAATGACTCT
. : . : . : . : . : . :
JMSF045J17+ TCCACAAACGCTGAAAGCCATTCCAGCTGCACAATATCCTCGTACGGAACTGAGAGCTCG
JMFF010M17+ TCCACAAACGCTGAAAGCCATTCCAGCTGCACAATATCCTCGTACGGAACTGAGAGCTCG
JMFF011K10+ TCCACAAACGCTGAAAGCCATTCCAGCTGCACAATATCCTCGTACGGAACTGAGAGCTCG
JMFF001A06+ TCCACAAACGCTGAAAGCCATTCCAGCTGCACAATATCCTCGTACGGAACTGAGAGCTCG
____________________________________________________________
consensus TCCACAAACGCTGAAAGCCATTCCAGCTGCACAATATCCTCGTACGGAACTGAGAGCTCG
. : . : . : . : . : . :
JMSF045J17+ GCGGAGAGGTCAGAAGCGGAATGGCTGTGGGCGGCGGAGAAAATGGGGTCGGAATCCGGC
JMFF010M17+ GCGGAGAGGTCAGAAGCGGAATGGCTGTGGGCGGCGGAGAAAATGGGGTCGGAATCCGGC
JMFF011K10+ GCGGAGAGGTCAGAAGCGGAATGGCTGTGGGCGGCGGAGAAAATGGGGTCGGAATCCGGC
JMFF001A06+ GCGGAGAGGTCAGAAGCGGAATGGCTGTGGGCGGCGGAGAAAATGGGGTCGGAATCCGGC
____________________________________________________________
consensus GCGGAGAGGTCAGAAGCGGAATGGCTGTGGGCGGCGGAGAAAATGGGGTCGGAATCCGGC
. : . : . : . : . : . :
JMSF045J17+ AACGGCTCGTCCCAAATGCTGGGGAAATTGGCGCAGTCGCCGGAGCCGACACCGCCGC-A
JMFF010M17+ AACGGCTCGTCCCAAATGCTGGGGAAATTGGCGCAGTCGCCGGAGCCGACACCGCCGC-A
JMFF011K10+ AACGGCTCGTCCCAAATGCTGGGGAAATTGGCGCAGTCGCCGGAGCCGACACCGCCGC-A
JMFF001A06+ AACGGCTCGTCCCAAATGCTGGGGAAATTGGCGCAGTCGCCGGAGCCGACACCGCCGCAA
____________________________________________________________
consensus AACGGCTCGTCCCAAATGCTGGGGAAATTGGCGCAGTCGCCGGAGCCGACACCGCCGC-A
. : . : . : . : . : . :
JMSF045J17+ CTCATTCTCCGGGGGGAAGTCGATAAGGTCGTCAATGTGATCGAAGAAGCTGCCGCAGTC
JMFF010M17+ CTCATTCTCCGGGGGGAAGTCGATAAGGTCGTCAATGTGATCGAAGAAGCTGCCGCAGTC
JMFF011K10+ CTCATTCTCCGGGGGGAAGTCGATAAGGTCGTCAATGTGATCGAAGAAGCTGCCGCAGTC
JMFF001A06+ CTCATTCTCCGGGGGGAAGTCGATAAGGTCGTCAATGTGATCGAAGAAGCTGCCGCAGTC
____________________________________________________________
consensus CTCATTCTCCGGGGGGAAGTCGATAAGGTCGTCAATGTGATCGAAGAAGCTGCCGCAGTC
. : . : . : . : . : . :
JMSF045J17+ TATTTCATCGACGAAATTTGA
JMFF010M17+ TATTTCATCGACGAAATTTGAATCCATACTTGAACCTACAAAACTTTAACCTTTGGGAAG
JMFF011K10+ TATTTCATCGACGAAATTTGAATCCATACTTGAACCTACAAAACTTTAACCTTTGGGAAG
JMFF001A06+ TATTTCATCGACGAAATTTGAATCCATACTTGAACCTACAAAACTTTAACCTTTGGGAAG
____________________________________________________________
consensus TATTTCATCGACGAAATTTGAATCCATACTTGAACCTACAAAACTTTAACCTTTGGGAAG
. : . : . : . : . : . :
JMFF010M17+ AAAGAAGGGGGGATTTTGACTGGTTTGAGGAGACGAAAGAAAAC
JMFF011K10+ AAAGAAGGGGGGATTTTGACTGGTTTGAGGAGACGAAAGAAAACAAGCGGTGTTGGAGAT
JMFF001A06+ AAAGAAGGGGGGATTTTGACTGGTTTGAGGAGACGAAAGAAAACAAGCGGTGTTGGAGAT
____________________________________________________________
consensus AAAGAAGGGGGGATTTTGACTGGTTTGAGGAGACGAAAGAAAACAAGCGGTGTTGGAGAT