Contig 005870:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMCP018G03+                                                       TCATTTACTTTACTTT
JMCP005B07+                                                         ATTTACTTTACTTT
                      ____________________________________________________________
consensus                                                         TCATTTACTTTACTTT
 
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JMCP018G03+           TAAGAGAATATGAGAATATTTTGAATTAATTATTATATATAagaTTGATCAtGTGAtgat
JMCP005B07+           TAAGAGAATATGAGAATATTTTGAATTAATTATTATATATATCTTTGATCAAGTGAACaA
                      ____________________________________________________________
consensus             TAAGAGAATATGAGAATATTTTGAATTAATTATTATATATATCTTTGATCAAGTGAACTA
 
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rJMCP006H06+                                                        TAGTAGTtctttta
JMCP018G03+           AGATAAGTTAAGAATTagaTGGAAAAGTAgtaTTATAGCAACAtGTTAGTAGTAGAAtaa
JMCP005B07+           AGATAAGTTAAGAATTTCTTGGAAAAGTACATTTATAGCAACAAGTTAGTAGTAGAAATT
                      ____________________________________________________________
consensus             AGATAAGTTAAGAATTTCTTGGAAAAGTACATTTATAGCAACAAGTTAGTAGTAGAAATT
 
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rJMCP006H06+          ctatCtaaTtaaTGTaggCCAaggcttaatatcgatttctcctaacgatcacACtaactt
JMCP018G03+           GATAgtaTTATTTGTTCCCgtaggctgaTATAcgaAAAGAGGtaTGCaAGTGAgtaTGAA
JMCP005B07+           GATACATTTATTTGTTCCCCATCCGACTTATAGCTAAAGAGGATTGCTAGTGACtaTGAA
rJMCP019A10+          GATACATTTATTTGTTCCCCtaggctgaataAGCTAAAGAGGATTGCTAGTGACATTGAA
                      ____________________________________________________________
consensus             GATACATTTATTTGTTCCCCATCCGACTTATAGCTAAAGAGGATTGCTAGTGACATTGAA
 
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rJMCP006H06+          aatgatacTtacAtcgAaaaaaattaaTGGTtTCtaatgctGtTGtctccacAAACtctt
JMCP018G03+           TTtgaATGataGAAGgtaaaagattTTTGGTATgtaatgGAGATGAGAGGTGAAAgtcAA
JMCP005B07+           TTACTATGTATGAAGCATTTagaAATTTGGTATCATTACGAGATGAGAGGTGAAACAGAA
rJMCP019A10+          TTACTATGTATGAAGCATTTagaAATTTGGTATCATTACGAGATGAGAGGTGAAACAGAA
                      ____________________________________________________________
consensus             TTACTATGTATGAAGCATTTTCTAATTTGGTATCATTACGAGATGAGAGGTGAAACAGAA
 
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rJMCP006H06+          gtCtaagaagttaatgcaaaatTTAGGtgaTTTTTTTTTTcAATTTTGTGCTTTGtTttt
JMCP018G03+           gtgtaagaTCAtTTACGagaTATTAGGACTTTTTTTTTTTGAATTTTGTGCTTTGATAAA
JMCP005B07+           CAgATagaTCAATTACGagaTATTAGGAC-TTTTTTTTTTGAATTTTGTGCTTTGATAAA
rJMCP019A10+          CACATagTTCAATTACGagaTATTAGGAC-TTTTTTTTTTGAATTTTGTGCTTTGATAAA
                      ____________________________________________________________
consensus             CACATTCTTCAATTACGTCTTATTAGGACTTTTTTTTTTTGAATTTTGTGCTTTGATAAA
 
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rJMCP006H06+          GGAAtgGTGAGACGACAaatTAGAGGCGTAAGGCAGAGGCCGTGGGGgtttTGGGCGGCG
JMCP018G03+           GGAAACGTGAGACGACATTATAGAGGCGTAAGGCAGAGGCCGTGGGGCAAATGGGCGGCG
JMCP005B07+           GGAAACGTGAGACGACATTATAGAGGCGTAAGGCAGAGGCCGTGGGGCAAATGGGCGGCG
rJMCP019A10+          GGAAACGTGAGACGACATTATAGAGGCGTAAGGCAGAGGCCGTGGGGCAAATGGGCGGCG
                      ____________________________________________________________
consensus             GGAAACGTGAGACGACATTATAGAGGCGTAAGGCAGAGGCCGTGGGGCAAATGGGCGGCG
 
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rJMCP006H06+          GAGATTCGTGACCCGtAAAAAcgcGCaAGAGTTTGGCTGGGAACATTCGAgAgtcgaGAG
JMCP018G03+           GAGATTCGTGACCCGAAAAAAGCGGCTGGAGTTTGGCTGGGAACATTCGACACAGCTGAG
JMCP005B07+           GAGATTCGTGACCCGAAAAAAGCGGCTAGAGTTTGGCTGGGAACATTCGACACAGCTGAG
rJMCP019A10+          GAGATTCGTGACCCGAAAAAAGCGGCTAGAGTTTGGCTGGGAACATTCGACACAGCTGAG
                      ____________________________________________________________
consensus             GAGATTCGTGACCCGAAAAAAGCGGCTAGAGTTTGGCTGGGAACATTCGACACAGCTGAG
 
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rJMCP006H06+          GATGgtcgagaTGCATACGATGATGCTcgagaaAAGTTCAAGGGTTCgAAAGCgttcCTg
JMCP018G03+           GATGCAGCTCTTGCATACGATGAAGCTGCTCTTAAGTTCAAGGGTTCCAAAGCCAAGCTC
JMCP005B07+           GATGCAGCTCTTGCATACGATGATGCTGCTCTTAAGTTCAAGGGTCCCAAAGCCAAGCTC
rJMCP019A10+          GATGCAcgaCTTGCATACGATGATGCTGCTCTTAAGTTCAAGGGTTCCAAAGCCAAGCTC
                      ____________________________________________________________
consensus             GATGCAGCTCTTGCATACGATGATGCTGCTCTTAAGTTCAAGGGTTCCAAAGCCAAGCTC
 
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rJMCP006H06+          ttTTTCCCGGtttGGGaagttcGtAtAtCcGtcgaggcCatgcTgtcgtgacGCGGCGGA
JMCP018G03+           AATTTCCCGGAAAGGGTTCAAGGAAAAACGGAGCTCCGCTACGTCAGCACTGGCGGCGGA
JMCP005B07+           AATTTCCCGGAAAGGGTTCAAGGAAAAACGGAGCTCCGCTACGTCAGCACTGGCGGCGGA
rJMCP019A10+          AATTTCCCGGAAAGGGTTCAAGGAAAAACGGAGCTCCGCTACGTCAGCACTGGCGGCGGA
                      ____________________________________________________________
consensus             AATTTCCCGGAAAGGGTTCAAGGAAAAACGGAGCTCCGCTACGTCAGCACTGGCGGCGGA
 
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rJMCP006H06+          GGGAGCgtatACGCCGCCGGTGGCGGCGGAGGAGCT                        
JMCP018G03+           GGGAGCCATAACGCCGCCGGTGGCGGCGGAGGAGCTTCTTCCGCCGTCGATCACTACATT
JMCP005B07+           GGGAGCCATAACGCCGCCGGTGGCGGCGGAGGAGCTTCTTCCGCCGTCGATCACTACATT
rJMCP019A10+          GGGAGCCATAACGCCGCCGGTGGCGGCGGAGGAGCTTCTTCCGCCGTCGATCACTACATT
                      ____________________________________________________________
consensus             GGGAGCCATAACGCCGCCGGTGGCGGCGGAGGAGCTTCTTCCGCCGTCGATCACTACATT