Contig 005868:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP016C07Sequence521005868 (3)ref|XP_002515996.1|2e-21conserved hypothetical protein [Ricinus communis] gb|EEF46416.1| conserved hypot
JMFF042O23Sequence654011930 (4)emb|CDP19522.1|4e-103unnamed protein product [Coffea canephora]614005868 (3)ref|XP_006363751.1|2e-39PREDICTED: VHS domain-containing protein At3g16270-like [Solanum tuberosum]
JMSF010J17Sequence299011930 (4)gb|EPS70576.1|1e-18hypothetical protein M569_04182 [Genlisea aurea]704005868 (3)ref|XP_004237556.1|1e-54PREDICTED: VHS domain-containing protein At3g16270 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF010J17+                                TTCTAATCCTAATCCTGGCCATAATGTTTCCAATGATG
                      ____________________________________________________________
consensus                                   TTCTAATCCTAATCCTGGCCATAATGTTTCCAATGATG
 
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rJMSF010J17+          TCTTCAACAGCATGCCACCTTCTCAGATTTCTGGTTCAAGTACAATTCCAATGTTTCCTT
                      ____________________________________________________________
consensus             TCTTCAACAGCATGCCACCTTCTCAGATTTCTGGTTCAAGTACAATTCCAATGTTTCCTT
 
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rJMSF010J17+          TGGGTGCAATGGCATATAATATGCCTCCTGGCTTTATGTTAAATCCATCATTTGCTTCTC
rJMFF042O23+                                        GCTTTATGTTAAATCCATCATTTGCTTCTC
                      ____________________________________________________________
consensus             TGGGTGCAATGGCATATAATATGCCTCCTGGCTTTATGTTAAATCCATCATTTGCTTCTC
 
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rJMSF010J17+          AGGCATTGAATACAGGTGCCATGGGCAATCTTTTTGCCCAACAACAATTCCTTGCTGCAA
rJMFF042O23+          AGGCATTGAATACAGGTGCCATGGGCAATCTTTTTGCCCAACAACAATTCCTTGCTGCAA
                      ____________________________________________________________
consensus             AGGCATTGAATACAGGTGCCATGGGCAATCTTTTTGCCCAACAACAATTCCTTGCTGCAA
 
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rJMSF010J17+          TGTCCACTTTCCAGCAAATGGGCAGCTTGCAGCAAACTGCTAGTGTTAATCCTGCTTCTG
rJMFF042O23+          TGTCCACTTTCCAGCAAATGGGCAGCTTGCAGCAAACTGCTAGTGTTAATCCTGCTTCTG
rJMCP016C07-                             GGGCAGCTTGCAGCAAACTGCTAGTGTTAATCCTGCTTCTG
                      ____________________________________________________________
consensus             TGTCCACTTTCCAGCAAATGGGCAGCTTGCAGCAAACTGCTAGTGTTAATCCTGCTTCTG
 
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rJMSF010J17+          GATCTAATGGAGGTTACAATTCTGCACTTCCTGATATTTTCAATGCCAACATTCCTAACC
rJMFF042O23+          GATCTAATGGAGGTTACAATTCTGCACTTCCTGATATTTTCAATGCCAACATTCCTAACC
rJMCP016C07-          GATCTAATGGAGGTTACAATTCTGCACTTCCTGATATTTTCAATGCCAACATTCCTAACC
                      ____________________________________________________________
consensus             GATCTAATGGAGGTTACAATTCTGCACTTCCTGATATTTTCAATGCCAACATTCCTAACC
 
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rJMSF010J17+          AAACTCCAACATCATTGATGAACAGTCAAAAGAAAGAGGATACTAGAGCATTTGATTTTA
rJMFF042O23+          AAACTCCAACATCATTGATGAACAGTCAAAAGAAAGAGGATACTAGAGCATTTGATTTTA
rJMCP016C07-          AAACTCCAACATCATTGATGAACAGTCAAAAGAAAGAGGATACTAGAGCATTTGATTTTA
                      ____________________________________________________________
consensus             AAACTCCAACATCATTGATGAACAGTCAAAAGAAAGAGGATACTAGAGCATTTGATTTTA
 
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rJMSF010J17+          TCTCAGATCATCTGGCTGCGGCTCGTGACCCAAAAAGAGTAATTTAAGTTTTGAAGCTCA
rJMFF042O23+          TCTCAGATCATCTGGCTGCGGCTCGTGACCCAAAAAGAGTAATTTAAGTTTTGAAGCTCA
rJMCP016C07-          TCTCActTCATCTGGCTGCGGCTCGTGACCCAAAAAGAGTAATTTAAGTTTTGAAGCTCA
                      ____________________________________________________________
consensus             TCTCAGATCATCTGGCTGCGGCTCGTGACCCAAAAAGAGTAATTTAAGTTTTGAAGCTCA
 
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rJMSF010J17+          TATGCAATCACAATATGGCGCTTAGCTCCTTTGAATTTAAGGATCTCAACTTCAAAGTGG
rJMFF042O23+          TATGCAATCACAATATGGCGCTTAGCTCCTTTGAATTTAAGGATCTCAACTTCAAAGTGG
rJMCP016C07-          TATGCAATCACAATATGGCGCaaAGCTCCTTTGAATTTAAGGATCTCAACTTCAAAGTGG
                      ____________________________________________________________
consensus             TATGCAATCACAATATGGCGCTTAGCTCCTTTGAATTTAAGGATCTCAACTTCAAAGTGG
 
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rJMSF010J17+          AATCTGGCAATTAGACCAAGGGATCTCAACCTGAAAATATTAGTTGTTTCATAATAATAA
rJMFF042O23+          AATCTGGCAATTAGACCAAGGGATCTCAACCTGAAAATATTAGTTGTTTCATAATAATAA
rJMCP016C07-          AATCTGGCAATTAGACCAAGGGATCTCAACCTGAAAATATTAGTTGTTTCATAATAATAA
                      ____________________________________________________________
consensus             AATCTGGCAATTAGACCAAGGGATCTCAACCTGAAAATATTAGTTGTTTCATAATAATAA
 
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rJMSF010J17+          TAATGCTTCCTTTTGATATTTCTTAGGAGATATAGGTTGATTTGTTGAGAACTTTTGTTT
rJMFF042O23+          TAATGCTTCCTTTTGATATTTCTTAGGAGATATAGGTTGATTTGTTGAGAACTTTTGTTT
rJMCP016C07-          TAATGCTTCCTTTTGATATTTCTTAGGAGATATAGGTTGATTTGTTGAGAACTTTTGTTT
                      ____________________________________________________________
consensus             TAATGCTTCCTTTTGATATTTCTTAGGAGATATAGGTTGATTTGTTGAGAACTTTTGTTT
 
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rJMSF010J17+          TGGCGCGTCACATAAGTGTAATGAATCCCTAGTACAAGAAAAAGAAAGATTTGGTCGGTG
rJMFF042O23+          TGGCGCGTCACATAAGTGTAATGAATCCCTAGTACAAGAAAAAGAAAGATTTGGTCGGTG
rJMCP016C07-          TGGCGCGTCACATAAGTGTAATGAATCCCTAGTACAAGAAAAAGAAAGATTTGGTCGGTG
                      ____________________________________________________________
consensus             TGGCGCGTCACATAAGTGTAATGAATCCCTAGTACAAGAAAAAGAAAGATTTGGTCGGTG
 
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rJMSF010J17+          ATGCTT                                                      
rJMFF042O23+          ATGCTTGTTGATTTGATGTAATGACAGAAGAATGAAGTATGTGC                
rJMCP016C07-          ATGCTTGTTGATTTGATGTAATGACAGAAGAATGAAGTATGTGCAGATTTATATTCTTTT
                      ____________________________________________________________
consensus             ATGCTTGTTGATTTGATGTAATGACAGAAGAATGAAGTATGTGCAGATTTATATTCTTTT