Contig 005867:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001E09Sequence382005867 (4)emb|CAB93342.1|2e-08neoxanthin synthase [Solanum lycopersicum]
JMCP002B11Sequence382005867 (4)emb|CAB93342.1|2e-08neoxanthin synthase [Solanum lycopersicum]
JMCP002G02Sequence382005867 (4)emb|CAB93342.1|2e-08neoxanthin synthase [Solanum lycopersicum]
JMCP011F07Sequence382005867 (4)emb|CAB93342.1|2e-08neoxanthin synthase [Solanum lycopersicum]

Alignment

This contig is upended


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rJMCP002G02+                                                   TATTATGGTATAAGCCAAG
JMCP002B11+                                                    TATTATGGTATAAGCCAAG
rJMCP001E09+                                                   TATTATGGTATAAGCCAAG
rJMCP011F07+                                                CGATATTATGGTATAAGCCAAG
                      ____________________________________________________________
consensus                                                   CGATATTATGGTATAAGCCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002G02+          ACTGCGGCAAAGAGCATCAATCTTTTGGCTTCATCCTGTGATTCCTCACATTCCCATTTT
JMCP002B11+           tCTGCGGCAAAGAGCATCAATCTTTTGGCTTCATCCTGTGATTCCTCACATTCCCATTTT
rJMCP001E09+          ACTGCGGCAAAGAGCATCAATCTTTTGGCTTCATCCTGTGATTCCTCACATTCCCATTTT
rJMCP011F07+          ACTGCGGCAAAGAGCATCAATCTTTTGGCTTCATCCTGTGATTCCTCACATTCCCATTTT
                      ____________________________________________________________
consensus             ACTGCGGCAAAGAGCATCAATCTTTTGGCTTCATCCTGTGATTCCTCACATTCCCATTTT
 
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rJMCP002G02+          AAACACCCAAAGCCTAATAAATCTTCTATTCTTCTCCTCCATCAAGCTTCTTGTCATTTA
JMCP002B11+           AAACACCCAAAGCCTAATAAAagaagataagaagaCCTCCATCAAGCTTCTTGTCATTTA
rJMCP001E09+          AAACACCCAAAGCCTAATAAATCTTCTATTCTTCTCCTCCATCAAGCTTCTTGTCATTTA
rJMCP011F07+          AAACACCCAAAGCCTAATAAATCTTCTATTCTTCTCCTCCATCAAGCTTCTTGTCATTTA
                      ____________________________________________________________
consensus             AAACACCCAAAGCCTAATAAATCTTCTATTCTTCTCCTCCATCAAGCTTCTTGTCATTTA
 
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rJMCP002G02+          ATTTCAATCTTTGAATCTATGATGGCGATGGCGACTCTCCTTAACCCTTTAATCCCTTCT
JMCP002B11+           ATTTCAATCTTTGAATCTATGATGGCGATGcgcACTCTCCTTAACCCTTTAATCCCTaga
rJMCP001E09+          ATTTCAATCTTTGAATCTATGATGGCGATGGCGACTCTCCTTAACCCTTTAATCCCTTCT
rJMCP011F07+          ATTTCAATCTTTGAATCTATGATGGCGATGGCGACTCTCCTTAACCCTTTAATCCCTTCT
                      ____________________________________________________________
consensus             ATTTCAATCTTTGAATCTATGATGGCGATGGCGACTCTCCTTAACCCTTTAATCCCTTCT
 
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rJMCP002G02+          TCTCTGATTACCAAATCTCTCCGCTCACCGAAATCTCCATTTCTCAGTCCACCCACCCAG
JMCP002B11+           agagaGATTACCAAATCTCTCCGCTCACCGAAATCTCCATTagaCAGTCCACCCACCCAG
rJMCP001E09+          TCTCTGATTACCAAATCTCTCCGCTCACCGAAATCTCCATTTCTCAGTCCACCCACCCAG
rJMCP011F07+          TCTCTGATTACCAAATCTCTCCGCTCACCGAAATCTCCATTTCTCAGTCCACCCACCCAG
                      ____________________________________________________________
consensus             TCTCTGATTACCAAATCTCTCCGCTCACCGAAATCTCCATTTCTCAGTCCACCCACCCAG
 
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rJMCP002G02+          ACAAAGTCTTGTAGTCAAGCAGTAAAAAGCACTGGTAAATTTGGTAGCTTTCTTGACTTG
JMCP002B11+           ACAAAGTCaTGTAGTCAAGCAGTAAAAAGCACTGGTAAATTTGGTAGCTTTCTTGACTTG
rJMCP001E09+          ACAAAGTCTTGTAGTCAAGCAGTAAAAAGCACTGGTAAATTTGGTAGCTTTCTTGACTTG
rJMCP011F07+          ACAAAGTCTTGTAGTCAAGCAGTAAAAAGCACTGGTAAATTTGGTAGCTTTCTTGACTTG
                      ____________________________________________________________
consensus             ACAAAGTCTTGTAGTCAAGCAGTAAAAAGCACTGGTAAATTTGGTAGCTTTCTTGACTTG
 
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rJMCP002G02+          GAACCCACATCAAAGCCAGAGTCTTTGGATCTTGATCTTTCCTGGCATGATCCCACTTCA
JMCP002B11+           GAACCCACATCAAAGCCAGAGTCTTTGGATCTTGATCTTTCCTGGCATGATCCCACTTCA
rJMCP001E09+          GAACCCACATCAAAGCCAGAGTCTTTGGATCTTGATCTTTCCTGGCATGATCCCACTTCA
rJMCP011F07+          GAACCCACATCAAAGCCAGAGTCTTTGGATCTTGATCTTTCCTGGCATGATCCCACTTCA
                      ____________________________________________________________
consensus             GAACCCACATCAAAGCCAGAGTCTTTGGATCTTGATCTTTCCTGGCATGATCCCACTTCA