Contig 005867:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001E09Sequence382005867 (4)emb|CAB93342.1|2e-08neoxanthin synthase [Solanum lycopersicum]
JMCP002B11Sequence382005867 (4)emb|CAB93342.1|2e-08neoxanthin synthase [Solanum lycopersicum]
JMCP002G02Sequence382005867 (4)emb|CAB93342.1|2e-08neoxanthin synthase [Solanum lycopersicum]
JMCP011F07Sequence382005867 (4)emb|CAB93342.1|2e-08neoxanthin synthase [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMCP002G02+ TATTATGGTATAAGCCAAG
JMCP002B11+ TATTATGGTATAAGCCAAG
rJMCP001E09+ TATTATGGTATAAGCCAAG
rJMCP011F07+ CGATATTATGGTATAAGCCAAG
                      ____________________________________________________________
consensus CGATATTATGGTATAAGCCAAG
 
. : . : . : . : . : . :
rJMCP002G02+ ACTGCGGCAAAGAGCATCAATCTTTTGGCTTCATCCTGTGATTCCTCACATTCCCATTTT
JMCP002B11+ tCTGCGGCAAAGAGCATCAATCTTTTGGCTTCATCCTGTGATTCCTCACATTCCCATTTT
rJMCP001E09+ ACTGCGGCAAAGAGCATCAATCTTTTGGCTTCATCCTGTGATTCCTCACATTCCCATTTT
rJMCP011F07+ ACTGCGGCAAAGAGCATCAATCTTTTGGCTTCATCCTGTGATTCCTCACATTCCCATTTT
                      ____________________________________________________________
consensus ACTGCGGCAAAGAGCATCAATCTTTTGGCTTCATCCTGTGATTCCTCACATTCCCATTTT
 
. : . : . : . : . : . :
rJMCP002G02+ AAACACCCAAAGCCTAATAAATCTTCTATTCTTCTCCTCCATCAAGCTTCTTGTCATTTA
JMCP002B11+ AAACACCCAAAGCCTAATAAAagaagataagaagaCCTCCATCAAGCTTCTTGTCATTTA
rJMCP001E09+ AAACACCCAAAGCCTAATAAATCTTCTATTCTTCTCCTCCATCAAGCTTCTTGTCATTTA
rJMCP011F07+ AAACACCCAAAGCCTAATAAATCTTCTATTCTTCTCCTCCATCAAGCTTCTTGTCATTTA
                      ____________________________________________________________
consensus AAACACCCAAAGCCTAATAAATCTTCTATTCTTCTCCTCCATCAAGCTTCTTGTCATTTA
 
. : . : . : . : . : . :
rJMCP002G02+ ATTTCAATCTTTGAATCTATGATGGCGATGGCGACTCTCCTTAACCCTTTAATCCCTTCT
JMCP002B11+ ATTTCAATCTTTGAATCTATGATGGCGATGcgcACTCTCCTTAACCCTTTAATCCCTaga
rJMCP001E09+ ATTTCAATCTTTGAATCTATGATGGCGATGGCGACTCTCCTTAACCCTTTAATCCCTTCT
rJMCP011F07+ ATTTCAATCTTTGAATCTATGATGGCGATGGCGACTCTCCTTAACCCTTTAATCCCTTCT
                      ____________________________________________________________
consensus ATTTCAATCTTTGAATCTATGATGGCGATGGCGACTCTCCTTAACCCTTTAATCCCTTCT
 
. : . : . : . : . : . :
rJMCP002G02+ TCTCTGATTACCAAATCTCTCCGCTCACCGAAATCTCCATTTCTCAGTCCACCCACCCAG
JMCP002B11+ agagaGATTACCAAATCTCTCCGCTCACCGAAATCTCCATTagaCAGTCCACCCACCCAG
rJMCP001E09+ TCTCTGATTACCAAATCTCTCCGCTCACCGAAATCTCCATTTCTCAGTCCACCCACCCAG
rJMCP011F07+ TCTCTGATTACCAAATCTCTCCGCTCACCGAAATCTCCATTTCTCAGTCCACCCACCCAG
                      ____________________________________________________________
consensus TCTCTGATTACCAAATCTCTCCGCTCACCGAAATCTCCATTTCTCAGTCCACCCACCCAG
 
. : . : . : . : . : . :
rJMCP002G02+ ACAAAGTCTTGTAGTCAAGCAGTAAAAAGCACTGGTAAATTTGGTAGCTTTCTTGACTTG
JMCP002B11+ ACAAAGTCaTGTAGTCAAGCAGTAAAAAGCACTGGTAAATTTGGTAGCTTTCTTGACTTG
rJMCP001E09+ ACAAAGTCTTGTAGTCAAGCAGTAAAAAGCACTGGTAAATTTGGTAGCTTTCTTGACTTG
rJMCP011F07+ ACAAAGTCTTGTAGTCAAGCAGTAAAAAGCACTGGTAAATTTGGTAGCTTTCTTGACTTG
                      ____________________________________________________________
consensus ACAAAGTCTTGTAGTCAAGCAGTAAAAAGCACTGGTAAATTTGGTAGCTTTCTTGACTTG
 
. : . : . : . : . : . :
rJMCP002G02+ GAACCCACATCAAAGCCAGAGTCTTTGGATCTTGATCTTTCCTGGCATGATCCCACTTCA
JMCP002B11+ GAACCCACATCAAAGCCAGAGTCTTTGGATCTTGATCTTTCCTGGCATGATCCCACTTCA
rJMCP001E09+ GAACCCACATCAAAGCCAGAGTCTTTGGATCTTGATCTTTCCTGGCATGATCCCACTTCA
rJMCP011F07+ GAACCCACATCAAAGCCAGAGTCTTTGGATCTTGATCTTTCCTGGCATGATCCCACTTCA
                      ____________________________________________________________
consensus GAACCCACATCAAAGCCAGAGTCTTTGGATCTTGATCTTTCCTGGCATGATCCCACTTCA