Contig 005866:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP004E01Sequence630005866 (3)ref|XP_009795523.1|9e-99PREDICTED: DDB1- and CUL4-associated factor 8-like [Nicotiana sylvestris]
JMCP006B08Sequence618005866 (3)ref|XP_009795523.1|3e-95PREDICTED: DDB1- and CUL4-associated factor 8-like [Nicotiana sylvestris]
JMFF032P01Sequence597005866 (3)ref|XP_009795523.1|1e-58PREDICTED: DDB1- and CUL4-associated factor 8-like [Nicotiana sylvestris]702012354 (2)emb|CDP08939.1|9e-28unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF032P01+                GCTTCATATGTTAGGCTGTAGTTATGTACATTATTAGAGCGTTCAAGTAAATGGA
                      ____________________________________________________________
consensus                  GCTTCATATGTTAGGCTGTAGTTATGTACATTATTAGAGCGTTCAAGTAAATGGA
 
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JMFF032P01+           CTAAAGGAGCAATGGGCATGTGAAAGGTGTAGTTGCAAAAGCAGCTTGAACTACATTTTC
                      ____________________________________________________________
consensus             CTAAAGGAGCAATGGGCATGTGAAAGGTGTAGTTGCAAAAGCAGCTTGAACTACATTTTC
 
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JMFF032P01+           CTGTTTCTTCATCATTTCAGTACAATTTCATTTGAAGGCATGATATAAGAGCAAAATGTT
                      ____________________________________________________________
consensus             CTGTTTCTTCATCATTTCAGTACAATTTCATTTGAAGGCATGATATAAGAGCAAAATGTT
 
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JMFF032P01+           TCACCTGGCCATCAGCAGATGAAGTTACGATTTTTCCATCATCGGTTAATGGCATGAATT
JMCP004E01+             ACCTGGCCATCAGCAGATGCAGTGACTATTTTACGATCATCAGTGAATGGCATGAACT
rJMCP006B08+            ACCTGGCCATCAGCAGATGCAGTGACTATTTTACGATCATCAGTGAATGGCATGAACT
                      ____________________________________________________________
consensus             TCACCTGGCCATCAGCAGATGCAGTGACTATTTTACGATCATCAGTGAATGGCATGAACT
 
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JMFF032P01+           TGGCTTGGAATATGTTATCCGAGTGGCCTGATGCATACGACATTTTTGATGTCTTTGTTG
JMCP004E01+           TGGCCTGGAAGATGTTATCCAAGTGACCTGATGGATATGACAATTTTGATGTCTTTGTGG
rJMCP006B08+          TGGCCTGGAAGATGTTATCCAAGTGACCTGATGGATATGACAATTTTGATGTCTTTGTGG
                      ____________________________________________________________
consensus             TGGCCTGGAAGATGTTATCCAAGTGACCTGATGGATATGACAATTTTGATGTCTTTGTGG
 
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JMFF032P01+           CCCATTCCCACAAAATTATTTGTTTGTCATCAGAACCAGACACTAGAATGTCGCCGGTGG
JMCP004E01+           CCCAGTCCCACAAAATTACTTGTTTGTCATCAGAGCCAGACACCAGAATATCACCGGTGG
rJMCP006B08+          CCCAGTCCCACAAAATTACTTGTTTGTCATCAGAGCCAGACACCAGAATATCACCGGTGG
                      ____________________________________________________________
consensus             CCCAGTCCCACAAAATTACTTGTTTGTCATCAGAGCCAGACACCAGAATATCACCGGTGG
 
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JMFF032P01+           AGTTGAAGTCAATTGTGTTAACACATCCCAGATGACCATTTAATTTCCCATACAAATCAA
JMCP004E01+           AGTTGAAGTTGATTGTGTTAACACATCCCTGATGACCATTTAATTTCCCATACAAATCAA
rJMCP006B08+          AGTTGAAGTTGATTGTGTTAACACATCCCTGATGACCATTTAATTTCCCATACAAATCAA
                      ____________________________________________________________
consensus             AGTTGAAGTTGATTGTGTTAACACATCCCTGATGACCATTTAATTTCCCATACAAATCAA
 
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JMFF032P01+           GCCGCTTCACCAGAGGCTCGGAAGCAGAGACTCGGCGAGAGAAGTTTCTGGGAGCTGAGA
JMCP004E01+           GTTGCTTCACCACAGCCTCGGAAGCAGAGATTCGGCGAGAGAAAGTTCTGGCAGCCGAGA
rJMCP006B08+          GTTGCTTCACCACAGCCTCGGAAGCAGAGATTCGGCGAGAGAAAGTTCTGGCAGCCGAGA
                      ____________________________________________________________
consensus             GTTGCTTCACCACAGCCTCGGAAGCAGAGATTCGGCGAGAGAAAGTTCTGGCAGCCGAGA
 
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JMFF032P01+           AACCGGACTCTCTCTTCCAGAATT                                    
JMCP004E01+           AACCAATCTCTCTCTTCCAAAATTCTAAGAATTTATCATCTTTAGAAGCACTGTAGAGCT
rJMCP006B08+          AACCAATCTCTCTCTTCCAAAATTCTAAGAATTTATCATCTTTAGAAGCACTGTAGAGCT
                      ____________________________________________________________
consensus             AACCAATCTCTCTCTTCCAAAATTCTAAGAATTTATCATCTTTAGAAGCACTGTAGAGCT
 
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JMCP004E01+           TTTTCATCTTCCTGTTTCTAAGAGTTTATAGCTCTCAATGCGTTGCGACTGTGCAGCTTA
rJMCP006B08+          TTTTCATCTTCCTGTTTCCAAGAGTTTATAGCTCTCAATGCGTTGCGACTGTGCAGCTTA
                      ____________________________________________________________
consensus             TTTTCATCTTCCTGTTTCTAAGAGTTTATAGCTCTCAATGCGTTGCGACTGTGCAGCTTA
 
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JMCP004E01+           CACAGAAACAGAATCACTCGAACGAGGAGAGAGAGATGAGAATATTATAAGGAAAGCGGT
rJMCP006B08+          CACAGAAACAGAATCACTCGAACGAGGAGAGAGAGATGAGAATATTATAAGGAAAGCGGT
                      ____________________________________________________________
consensus             CACAGAAACAGAATCACTCGAACGAGGAGAGAGAGATGAGAATATTATAAGGAAAGCGGT