Contig 005864:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001G09Sequence175005864 (3)
JMFF003L14Sequence499003571 (4)gb|AID55340.1|2e-271-deoxy-D-xylulose 5-phosphate reductoisomerase [Actinidia arguta]751005864 (3)gb|KJB37089.1|2e-117hypothetical protein B456_006G189200 [Gossypium raimondii]
JMSF009K13Sequence404003571 (4)ref|XP_011016464.1|1e-07PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 714005864 (3)gb|KJB37089.1|9e-121hypothetical protein B456_006G189200 [Gossypium raimondii]

Alignment

This contig is upended


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rJMSF009K13+                   TATTCAATAAGGGTCTAGAAGTTATTGAAGCTCATTATCTTTTTGGGGCCG
rJMFF003L14+                             GGGTCTAGAAGTTATTGAAGCTCATTATCTTTTTGGGGCCG
                      ____________________________________________________________
consensus                      TATTCAATAAGGGTCTAGAAGTTATTGAAGCTCATTATCTTTTTGGGGCCG
 
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rJMSF009K13+          AGTATGATGACATTGAAATTGTGATTCATCCGCAATCCATCATACATTCCATGATCGAAA
rJMFF003L14+          AGTATGATGACATTGAAATTGTGATTCATCCGCAATCCATCATACATTCCATGATCGAAA
                      ____________________________________________________________
consensus             AGTATGATGACATTGAAATTGTGATTCATCCGCAATCCATCATACATTCCATGATCGAAA
 
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rJMSF009K13+          CAAAGGATTCGTCTGTTTTGGCACAATTGGGGTGGCCCGATATGCGTATTCCTATCCTTT
rJMFF003L14+          CAAAGGATTCGTCTGTTTTGGCACAATTGGGGTGGCCCGATATGCGTATTCCTATCCTTT
                      ____________________________________________________________
consensus             CAAAGGATTCGTCTGTTTTGGCACAATTGGGGTGGCCCGATATGCGTATTCCTATCCTTT
 
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rJMSF009K13+          ACACAATGTCCTGGCCGGATAGAATTTATTGTTCTGAGATCACTTGGCCACGCCTCGATT
rJMFF003L14+          ACACAATGTCCTGGCCGGATAGAATTTATTGTTCTGAGATCACTTGGCCACGCCTCGATT
                      ____________________________________________________________
consensus             ACACAATGTCCTGGCCGGATAGAATTTATTGTTCTGAGATCACTTGGCCACGCCTCGATT
 
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rJMSF009K13+          TGTGCAAGCTTGGGTCGTTGACGTTTAAGGCCCCTGACAAAGTAAAATACCCATCCATGG
rJMFF003L14+          TGTGCAAGCTTGGGTCGTTGACGTTTAAGGCCCCTGACAAAGTAAAATACCCATCCATGG
                      ____________________________________________________________
consensus             TGTGCAAGCTTGGGTCGTTGACGTTTAAGGCCCCTGACAAAGTAAAATACCCATCCATGG
 
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rJMSF009K13+          ATCTCGCTTATGCTGCTGGACGGGCAGGAGGGACCATGACGGGAGTTCTCAGTGCAGCAA
rJMFF003L14+          ATCTCGCTTATGCTGCTGGACGGGCAGGAGGGACCATGACGGGAGTTCTCAGTGCAGCAA
                      ____________________________________________________________
consensus             ATCTCGCTTATGCTGCTGGACGGGCAGGAGGGACCATGACGGGAGTTCTCAGTGCAGCAA
 
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rJMSF009K13+          ATGAAAAAGCGGTTGAATTATTTATCGACGAGAAAATTAGCTACCTGGACATTTTCAAGG
rJMFF003L14+          ATGAAAAAGCGGTTGAATTATTTATCGACGAGAAAATTAGCTACCTGGACATTTTCAAGG
                      ____________________________________________________________
consensus             ATGAAAAAGCGGTTGAATTATTTATCGACGAGAAAATTAGCTACCTGGACATTTTCAAGG
 
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rJMSF009K13+          TTGTTGAGCTAACCTGTGATAAGCATCAGGAAGAGTTGGTGGCCTCGCCTTCCTTGGAGG
rJMFF003L14+          TTGTTGAGCTAACCTGTGATAAGCATCAGGAAGAGTTGGTGGCCTCGCCTTCCTTGGAGG
                      ____________________________________________________________
consensus             TTGTTGAGCTAACCTGTGATAAGCATCAGGAAGAGTTGGTGGCCTCGCCTTCCTTGGAGG
 
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rJMSF009K13+          AAATCGTACATTATGATTTATGGGCTCGGGATTACGCTGCCAGTTTGAAAACCTCTAGCG
rJMFF003L14+          AAATCGTACATTATGATTTATGGGCTCGGGATTACGCTGCCAGTTTGAAAACCTCTAGCG
                      ____________________________________________________________
consensus             AAATCGTACATTATGATTTATGGGCTCGGGATTACGCTGCCAGTTTGAAAACCTCTAGCG
 
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rJMSF009K13+          GCTTGAGCCCAGCGCTCGTATAACCAGCTGGCCGGGAGCGCTATTGGTCGGAGGAGCAAA
rJMFF003L14+          GCTTGAGCCCAGCGCTCGTATAACCAACTGGCCGGGAGCGCTATTGGTCGGAGGAGCAAA
                      ____________________________________________________________
consensus             GCTTGAGCCCAGCGCTCGTATAACCAGCTGGCCGGGAGCGCTATTGGTCGGAGGAGCAAA
 
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rJMSF009K13+          GCCATCACGTTACCGGCGAAGGCGAGTTTCCGGGGAAAAGTGAAAGGGGAATGGGAGGGC
rJMFF003L14+          GCCATCACGTTACCGGCGAAGGCGAGTTTCCGGGGAAAAGTGAAAGGGGAATGGGAGGGC
rJMCP001G09-               CACGTTACCGGCGAAGGCGAGTTTCCGGGGAAAAGTGAAAGGGGAATGGGAGGGC
                      ____________________________________________________________
consensus             GCCATCACGTTACCGGCGAAGGCGAGTTTCCGGGGAAAAGTGAAAGGGGAATGGGAGGGC
 
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rJMSF009K13+          AGCAGGAGACAGGCAAATGTATCACATTTGAAATAAACATAATGTATGTTTCTGTGAGCA
rJMFF003L14+          AGCAGGAGACAGGCAAATGTATCACATTTGAAATAAACATAATGTATGTTTCTGTGAGCA
rJMCP001G09-          AGCAGGAGACAGGCAAATGTATCACATTTGAAATAAACATAATGTATGTTTCTGTGAGCA
                      ____________________________________________________________
consensus             AGCAGGAGACAGGCAAATGTATCACATTTGAAATAAACATAATGTATGTTTCTGTGAGCA
 
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rJMSF009K13+          TTT                                                         
rJMFF003L14+          TTTGTAATGATACTTCATTATGAGCTGCAAAGCCTGGTAATGGTATAAAT          
rJMCP001G09-          TTTGTAATGATACTTCATTATGAGCTGCAAAGCCTGGTAATGGTATAAATTTATGATTCC
                      ____________________________________________________________
consensus             TTTGTAATGATACTTCATTATGAGCTGCAAAGCCTGGTAATGGTATAAATTTATGATTCC