Contig 005863:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP019H07Sequence563005863 (2)ref|XP_009795340.1|7e-64PREDICTED: pumilio homolog 1-like isoform X2 [Nicotiana sylvestris]
JMFS101H11Sequence628005863 (2)ref|XP_009597729.1|4e-112PREDICTED: pumilio homolog 2-like isoform X2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS101H11+                                                   TTCCATGTTCAAAAAACTTN
                      ____________________________________________________________
consensus                                                     TTCCATGTTCAAAAAACTTN
 
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JMFS101H11+           TGGATCACATAATTACCAAACACATCAGTCATTAAGTTAAGAGCATGGGGCAAAATTTCA
                      ____________________________________________________________
consensus             TGGATCACATAATTACCAAACACATCAGTCATTAAGTTAAGAGCATGGGGCAAAATTTCA
 
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JMFS101H11+           TGGAAGACCATGTTCTTCTCTTCAACAGTAGCAGTCTCAAGTTTTTGTTGAATGAACCGA
                      ____________________________________________________________
consensus             TGGAAGACCATGTTCTTCTCTTCAACAGTAGCAGTCTCAAGTTTTTGTTGAATGAACCGA
 
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JMFS101H11+           CTTCCATACTGATCCGCACTGAACTCAACAACATGACCATCTATCTCTGATAACTCAAAG
                      ____________________________________________________________
consensus             CTTCCATACTGATCCGCACTGAACTCAACAACATGACCATCTATCTCTGATAACTCAAAG
 
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JMFS101H11+           CATTTAGTTTTACTGCTCTTAAACTCATCTAATAATGATGACGCAAAACTCTGACCCAAG
                      ____________________________________________________________
consensus             CATTTAGTTTTACTGCTCTTAAACTCATCTAATAATGATGACGCAAAACTCTGACCCAAG
 
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JMFS101H11+           TTAGATGGTGAATCAGAGTGCCAGGCACCCATTACACCAGCACCCAAGTTCCTCATGCCT
JMCP019H07+                                                CAGCACCCAAGaaggaCAacgga
                      ____________________________________________________________
consensus             TTAGATGGTGAATCAGAGTGCCAGGCACCCATTACACCAGCACCCAAGTTCCTCATGCCT
 
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JMFS101H11+           GATGTAAAATGCATATTCCTTTCACCATACCTTACAGGACTACCAGGTCCAAAAGGGGAA
JMCP019H07+           ctacTAAAATGCtatTTggTTTCAggtatggaatgtcGACTACCAGGTCCAAAAGGGGAA
                      ____________________________________________________________
consensus             GATGTAAAATGCATATTCCTTTCACCATACCTTACAGGACTACCAGGTCCAAAAGGGGAA
 
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JMFS101H11+           TTCGGAAGAATTGAACCTGCTAATGGACTTCCAGGGTATGATATACCAGCACCAAGTGTT
JMCP019H07+           TTCGGAAGAATTGAACCTGCTAATGGACTTCCAGGGTATGATATACCAGCACCAAGTGTT
                      ____________________________________________________________
consensus             TTCGGAAGAATTGAACCTGCTAATGGACTTCCAGGGTATGATATACCAGCACCAAGTGTT
 
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JMFS101H11+           GAATTTCCATAGTAACCATGATTTATGCCACCAGTTTTACTAAAGCTTGGAAAGCCATAC
JMCP019H07+           GAATTTCCATAGTAACCATGATTTATGCCACCAGTTTTACTAAAGCTTGGAAAGCCATAC
                      ____________________________________________________________
consensus             GAATTTCCATAGTAACCATGATTTATGCCACCAGTTTTACTAAAGCTTGGAAAGCCATAC
 
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JMFS101H11+           TGTGATTTCTGAGAAGCAAGCAATCCCAGGTGAGCTTTCTGAAGTTCAAGATAATCCATG
JMCP019H07+           TGTGATTTCTGAGAAGCAAGCAATCCCAGGTGAGCTTTCTGAAGTTCAAGATAATCCATG
                      ____________________________________________________________
consensus             TGTGATTTCTGAGAAGCAAGCAATCCCAGGTGAGCTTTCTGAAGTTCAAGATAATCCATG
 
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JMFS101H11+           TATGAATTGCCCAGGGATTCCCTGTTAATTATTGGATTGTTAAGAGCTGTGAGGTTAGCA
JMCP019H07+           TATGAATTGCCCAGGGATTCCCTGTTAATTATTGGATTGTTAAGAGCTGTGAGGTTAGCA
                      ____________________________________________________________
consensus             TATGAATTGCCCAGGGATTCCCTGTTAATTATTGGATTGTTAAGAGCTGTGAGGTTAGCA
 
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JMFS101H11+           GCAGAAAG                                                    
JMCP019H07+           GCAGAAAGATCAGTTGATCTCAAGTACTGAAGGTACAGAGGATCCATCAAGGGATTCTGA
                      ____________________________________________________________
consensus             GCAGAAAGATCAGTTGATCTCAAGTACTGAAGGTACAGAGGATCCATCAAGGGATTCTGA
 
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JMCP019H07+           ACAGAATTCCCCAAGCTTGAATTCCTAAGTCTATGGAGGTTCTGTATTTCTGCTGCAGCA
                      ____________________________________________________________
consensus             ACAGAATTCCCCAAGCTTGAATTCCTAAGTCTATGGAGGTTCTGTATTTCTGCTGCAGCA
 
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JMCP019H07+           GCTAATAAATTAGGTGGCAAAGTTAAGCCACCTCCCATTGATCGTGAGTCAATTCCAGAA
                      ____________________________________________________________
consensus             GCTAATAAATTAGGTGGCAAAGTTAAGCCACCTCCCATTGATCGTGAGTCAATTCCAGAA
 
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JMCP019H07+           GCTCCAATTGCTGTTCCAGCACCAACATTATCAGATAGGTAAGGCAAATGACCACTCTGC
                      ____________________________________________________________
consensus             GCTCCAATTGCTGTTCCAGCACCAACATTATCAGATAGGTAAGGCAAATGACCACTCTGC