| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP004C11 | Sequence | 619 | 005861 (7) | ref|XP_009616620.1| | 1e-92 | PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Nicotiana t | |||||
| JMCP005A09 | Sequence | 531 | 005861 (7) | ref|XP_011009583.1| | 1e-69 | PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Populus eup | |||||
| JMCP008H03 | Sequence | 202 | 005861 (7) | ||||||||
| JMCP010C12 | Sequence | 340 | 005861 (7) | ref|XP_002280053.1| | 1e-21 | PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Vitis vinif | |||||
| JMFN012O16 | Sequence | 590 | 005861 (7) | ref|XP_009616620.1| | 2e-104 | PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Nicotiana t | |||||
| JMFN020N13 | Sequence | 222 | 005861 (7) | ref|XP_009804303.1| | 3e-40 | PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Nicotiana s | |||||
| JMFN029H08 | Sequence | 352 | 005861 (7) | ref|XP_009616620.1| | 4e-72 | PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Nicotiana t | |||||
This contig is upended
. : . : . : . : . : . :
JMFN012O16+ ATTCCAATTTCATCGAGGACCTGGTTCACCAACTCTTCAGTT
____________________________________________________________
consensus ATTCCAATTTCATCGAGGACCTGGTTCACCAACTCTTCAGTT
. : . : . : . : . : . :
JMFN029H08+ GCATCATCTATGGCATCTCCCATCAGTTCACTT
JMFN020N13+ TCCAATGCATCATCTATGGCATCTCCCATCACTTCACTT
JMFN012O16+ TCTTCTTCTTCTTCGTCCCCTTCCAATGCATCATCTATGGCATCTCCCATCACTTCACTT
rJMCP004C11+ ATCTCCCATCACTTCACTT
____________________________________________________________
consensus TCTTCTTCTTCTTCGTCCCCTTCCAATGCATCATCTATGGCATCTCCCATCACTTCACTT
. : . : . : . : . : . :
JMFN029H08+ ACCATTTCCATTTTCTCGTTTTGCATCTCAAACTCTTGCATTATCCTCTGCAGTGCAGGC
JMFN020N13+ ACCATTTCCATTTTCTCGTTNTGCATCTCAAACTCTTGCATTATCCTCTGCAGTGCAGGC
JMFN012O16+ ACCATTTCCATTTTCTCGTTTTGCATCTCAAACTCTTGCATTATCCTCTGCAGTGCAGGC
rJMCP004C11+ ACCtaaTCCtaaTTCTCGTTTTGCAagTCAAACTCTTcgtaaATggagTcgAcacgtccC
____________________________________________________________
consensus ACCATTTCCATTTTCTCGTTTTGCATCTCAAACTCTTGCATTATCCTCTGCAGTGCAGGC
. : . : . : . : . : . :
JMFN029H08+ AAGTTCATCTGTCTATTCATCTTGCCCATTGCCTTGGTGACACCTTTCATTGCCTCCCCC
JMFN020N13+ AAGTTCATCTGTCTATTCATCTTGCCCATTGCCTTGGTGACACCTTTCATTGCCTCCCCC
JMFN012O16+ AAGTTCATCTGTCTATTCATCTTGCCCATTGCCTTGGTGACACCTTTCATTGCCTCCCCC
rJMCP005A09+ TGTCTATTCAaCTTGCggtaacggaaccacACtggaaagtaacggaCCCCC
rJMCP004C11+ AAcaTCATCTGTCTATTCATCTTGCCgtaacggaaGcacACACgaaTCtaaGCgaCCCCC
____________________________________________________________
consensus AAGTTCATCTGTCTATTCATCTTGCCCATTGCCTTGGTGACACCTTTCATTGCCTCCCCC
. : . : . : . : . : . :
JMFN029H08+ ATAGCTTGAGTTGATTTCAAAGTCTGGATCCTGAGGGAGACCCCTTGAAGTTGGGACTTC
JMFN020N13+ ATAGCTTGAGTTGATTTCAAAGTCTGGATCCTGAGGGAGACCCCTTGAAGTTGGGACTTC
JMFN012O16+ ATAGCTTGAGTTGATTTCAAAGTCTGGATCCTGAGGGAGACCCCTTGAAGTTGGGACTTC
rJMCP005A09+ ATtcgaactcaacATTTCAAAGaCTGGATggacAGGGAGACgggaactAcaacGGACTTC
rJMCP004C11+ ATtcgaactcaacATTTCAAAGaCTGGATggacAGGGAGACgggaactAcaaGGGtgaTC
____________________________________________________________
consensus ATAGCTTGAGTTGATTTCAAAGTCTGGATCCTGAGGGAGACCCCTTGAAGTTGGGACTTC
. : . : . : . : . : . :
JMFN029H08+ AGCTTATAAAATTTTTCAATTTGATGTCTTGTTCTAATGAGATCCTTTGCCATCACTTTA
JMFN020N13+ AGC
JMFN012O16+ AGCTTATAAAATTTTTCAATTTGATGTCTTGTTCTAATGAGATCCTTTGCCATCACTTTA
rJMCP005A09+ AcgTTATAAAATaTTTCAAaaaGATGTCTTGTagattacAGATCgaaTGCCATCACaaaA
rJMCP004C11+ AGCTTATAAAtaaTTTCAAaaaGATGTCaacTagTAtacAGATCgaaTGCCATCACTTTA
____________________________________________________________
consensus AGCTTATAAAATTTTTCAATTTGATGTCTTGTTCTAATGAGATCCTTTGCCATCACTTTA
. : . : . : . : . : . :
JMFN029H08+ ACAGCTCCCATCTGTCCTTGCTTCGCACTTTTCTTTATCTCTGCAATAAGTTTTTTCTCT
JMFN012O16+ ACAGCTCCCATCTGTCCTTGCTTCGCACTTTTCTTTATCTCTGCAATAAGTTTTTTCTCT
rJMCP005A09+ ACAcgTCCCAagTGTCggacCTTCGCACTTTTCTTTATCTCTGCttaAAGTTTTTTCTCT
rJMCP004C11+ ACAcgTCCCAagTGagggacgTTCGCACTTTTCTTTATCTCTGCAATAtcaaTTTTCTCT
JMCP010C12+ CTTCGCACaaaagaTatagaCTcgttaAAcaTTTTagaCa
____________________________________________________________
consensus ACAGCTCCCATCTGTCCTTGCTTCGCACTTTTCTTTATCTCTGCAATAAGTTTTTTCTCT
. : . : . : . : . : . :
JMFN029H08+ TGAGCTTGTA
JMFN012O16+ TGAGCTTGTAACCCTTGTCTCTCCCTTTCTATTTCTCGGATAGATTTATCAAGCATCCGC
rJMCP005A09+ TGAGCaacTAACCgaacTCCgagggaaagTATTTCTgcGATAGAaaaATCttcCtagCGC
rJMCP004C11+ TGAGCaaGTAACCgaacTCCCTgggaaagTATTTCTgcGATAGATTTATCtAcCtagCGC
JMCP010C12+ acAGgaacTAAgggaacaCTCTggggaagaATTTCagcctatGtaaaAaCttcgtaggcg
____________________________________________________________
consensus TGAGCTTGTAACCCTTGTCTCTCCCTTTCTATTTCTCGGATAGATTTATCAAGCATCCGC
. : . : . : . : . : . :
JMFN012O16+ TTGTTCTCCCGTAGAAGCTCTGCGGGAGTTTTCTTCTTGCCGAAGAGGAAACTCATCGCG
rJMCP005A09+ TTGTTCTCCCcaAGAAGCaCTGCGGGAGaTTagaTCaacCCGAAGAGGAAACTCATCGCG
rJMCP004C11+ TTGTTCTCCgcaAGAAGCaCTGCGGGAGTTTagaTCTTGCCGAAGAGGAAACTCATCGCG
JMCP008H03+ CGAAGAGGAAACTCATCGCG
JMCP010C12+ aacTTCTCCgcatGAAGCaCTGCGGGAtaaaagaagaacggcAAGAGGAAtgaCAagGCG
____________________________________________________________
consensus TTGTTCTCCCGTAGAAGCTCTGCGGGAGTTTTCTTCTTGCCGAAGAGGAAACTCATCGCG
. : . : . : . : . : . :
JMFN012O16+ ATTGTTGGAACGATCGATTCTGCAAGCAAAACAAAAAAACTGTACTGAAGGAGGAGAAGT
rJMCP005A09+ taacaacGAACGAaCGATaCacgttcCAAAACtttAAAAgaGTtgaGAAGGAGGAGAAGT
rJMCP004C11+ taaGaacGAACGAaCGATTCaGCAtcCAAAACAAAAAAAgaGTACTGAAGGAGGAGAAGT
JMCP008H03+ AaaGTTGGAACGATCGATTCTcgttcCAAAACAAAAAAACTGTACTGAAGGAGGAGAAGT
JMCP010C12+ taacaacGtAgctaCctaagacgttcgAAAACtttAAAtgacTtgacttcctcctcttca
____________________________________________________________
consensus ATTGTTGGAACGATCGATTCTGCAAGCAAAACAAAAAAACTGTACTGAAGGAGGAGAAGT
. : . : . : . : . : . :
JMFN012O16+ CCTCTTCA
rJMCP005A09+ CCagTTCAGCtctATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAGCTCAAGTCGTCT
rJMCP004C11+ CCTCTTCAGCAcAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAGCTCAAGTCGTCT
JMCP008H03+ CCTCTTCAGCtctATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAGCTCAAGTCGTCT
JMCP010C12+ ggagTTCtcgtcttaaCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAGCTCAAGTCGTCT
____________________________________________________________
consensus CCTCTTCAGCAGAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAGCTCAAGTCGTCT
. : . : . : . : . : . :
rJMCP005A09+ ACCACTATTTCTCTGGGAGAAGAATGATCTTTTGGAGGCTTACGTATTACGCGGCAAAAG
rJMCP004C11+ ACCACTATTTCTCTGGGAGAAGAATGATCTTTTGGAGGCTTACGTATTACGCGGCAAAAG
JMCP008H03+ ACCACTATTTCTCTGGGAGAAGAATGATCTTTTGGAGGCTTACGTATTACGCGGCAAAAG
JMCP010C12+ ACCACTATTTCTCTGGGAGAAGAATGATCTTTTGGAGGCTTACGTATTACGCGGCAAAAG
____________________________________________________________
consensus ACCACTATTTCTCTGGGAGAAGAATGATCTTTTGGAGGCTTACGTATTACGCGGCAAAAG