Contig 005861:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP004C11Sequence619005861 (7)ref|XP_009616620.1|1e-92PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Nicotiana t
JMCP005A09Sequence531005861 (7)ref|XP_011009583.1|1e-69PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Populus eup
JMCP008H03Sequence202005861 (7)
JMCP010C12Sequence340005861 (7)ref|XP_002280053.1|1e-21PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Vitis vinif
JMFN012O16Sequence590005861 (7)ref|XP_009616620.1|2e-104PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Nicotiana t
JMFN020N13Sequence222005861 (7)ref|XP_009804303.1|3e-40PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Nicotiana s
JMFN029H08Sequence352005861 (7)ref|XP_009616620.1|4e-72PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Nicotiana t

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN012O16+ ATTCCAATTTCATCGAGGACCTGGTTCACCAACTCTTCAGTT
                      ____________________________________________________________
consensus ATTCCAATTTCATCGAGGACCTGGTTCACCAACTCTTCAGTT
 
. : . : . : . : . : . :
JMFN029H08+ GCATCATCTATGGCATCTCCCATCAGTTCACTT
JMFN020N13+ TCCAATGCATCATCTATGGCATCTCCCATCACTTCACTT
JMFN012O16+ TCTTCTTCTTCTTCGTCCCCTTCCAATGCATCATCTATGGCATCTCCCATCACTTCACTT
rJMCP004C11+ ATCTCCCATCACTTCACTT
                      ____________________________________________________________
consensus TCTTCTTCTTCTTCGTCCCCTTCCAATGCATCATCTATGGCATCTCCCATCACTTCACTT
 
. : . : . : . : . : . :
JMFN029H08+ ACCATTTCCATTTTCTCGTTTTGCATCTCAAACTCTTGCATTATCCTCTGCAGTGCAGGC
JMFN020N13+ ACCATTTCCATTTTCTCGTTNTGCATCTCAAACTCTTGCATTATCCTCTGCAGTGCAGGC
JMFN012O16+ ACCATTTCCATTTTCTCGTTTTGCATCTCAAACTCTTGCATTATCCTCTGCAGTGCAGGC
rJMCP004C11+ ACCtaaTCCtaaTTCTCGTTTTGCAagTCAAACTCTTcgtaaATggagTcgAcacgtccC
                      ____________________________________________________________
consensus ACCATTTCCATTTTCTCGTTTTGCATCTCAAACTCTTGCATTATCCTCTGCAGTGCAGGC
 
. : . : . : . : . : . :
JMFN029H08+ AAGTTCATCTGTCTATTCATCTTGCCCATTGCCTTGGTGACACCTTTCATTGCCTCCCCC
JMFN020N13+ AAGTTCATCTGTCTATTCATCTTGCCCATTGCCTTGGTGACACCTTTCATTGCCTCCCCC
JMFN012O16+ AAGTTCATCTGTCTATTCATCTTGCCCATTGCCTTGGTGACACCTTTCATTGCCTCCCCC
rJMCP005A09+ TGTCTATTCAaCTTGCggtaacggaaccacACtggaaagtaacggaCCCCC
rJMCP004C11+ AAcaTCATCTGTCTATTCATCTTGCCgtaacggaaGcacACACgaaTCtaaGCgaCCCCC
                      ____________________________________________________________
consensus AAGTTCATCTGTCTATTCATCTTGCCCATTGCCTTGGTGACACCTTTCATTGCCTCCCCC
 
. : . : . : . : . : . :
JMFN029H08+ ATAGCTTGAGTTGATTTCAAAGTCTGGATCCTGAGGGAGACCCCTTGAAGTTGGGACTTC
JMFN020N13+ ATAGCTTGAGTTGATTTCAAAGTCTGGATCCTGAGGGAGACCCCTTGAAGTTGGGACTTC
JMFN012O16+ ATAGCTTGAGTTGATTTCAAAGTCTGGATCCTGAGGGAGACCCCTTGAAGTTGGGACTTC
rJMCP005A09+ ATtcgaactcaacATTTCAAAGaCTGGATggacAGGGAGACgggaactAcaacGGACTTC
rJMCP004C11+ ATtcgaactcaacATTTCAAAGaCTGGATggacAGGGAGACgggaactAcaaGGGtgaTC
                      ____________________________________________________________
consensus ATAGCTTGAGTTGATTTCAAAGTCTGGATCCTGAGGGAGACCCCTTGAAGTTGGGACTTC
 
. : . : . : . : . : . :
JMFN029H08+ AGCTTATAAAATTTTTCAATTTGATGTCTTGTTCTAATGAGATCCTTTGCCATCACTTTA
JMFN020N13+ AGC
JMFN012O16+ AGCTTATAAAATTTTTCAATTTGATGTCTTGTTCTAATGAGATCCTTTGCCATCACTTTA
rJMCP005A09+ AcgTTATAAAATaTTTCAAaaaGATGTCTTGTagattacAGATCgaaTGCCATCACaaaA
rJMCP004C11+ AGCTTATAAAtaaTTTCAAaaaGATGTCaacTagTAtacAGATCgaaTGCCATCACTTTA
                      ____________________________________________________________
consensus AGCTTATAAAATTTTTCAATTTGATGTCTTGTTCTAATGAGATCCTTTGCCATCACTTTA
 
. : . : . : . : . : . :
JMFN029H08+ ACAGCTCCCATCTGTCCTTGCTTCGCACTTTTCTTTATCTCTGCAATAAGTTTTTTCTCT
JMFN012O16+ ACAGCTCCCATCTGTCCTTGCTTCGCACTTTTCTTTATCTCTGCAATAAGTTTTTTCTCT
rJMCP005A09+ ACAcgTCCCAagTGTCggacCTTCGCACTTTTCTTTATCTCTGCttaAAGTTTTTTCTCT
rJMCP004C11+ ACAcgTCCCAagTGagggacgTTCGCACTTTTCTTTATCTCTGCAATAtcaaTTTTCTCT
JMCP010C12+ CTTCGCACaaaagaTatagaCTcgttaAAcaTTTTagaCa
                      ____________________________________________________________
consensus ACAGCTCCCATCTGTCCTTGCTTCGCACTTTTCTTTATCTCTGCAATAAGTTTTTTCTCT
 
. : . : . : . : . : . :
JMFN029H08+ TGAGCTTGTA
JMFN012O16+ TGAGCTTGTAACCCTTGTCTCTCCCTTTCTATTTCTCGGATAGATTTATCAAGCATCCGC
rJMCP005A09+ TGAGCaacTAACCgaacTCCgagggaaagTATTTCTgcGATAGAaaaATCttcCtagCGC
rJMCP004C11+ TGAGCaaGTAACCgaacTCCCTgggaaagTATTTCTgcGATAGATTTATCtAcCtagCGC
JMCP010C12+ acAGgaacTAAgggaacaCTCTggggaagaATTTCagcctatGtaaaAaCttcgtaggcg
                      ____________________________________________________________
consensus TGAGCTTGTAACCCTTGTCTCTCCCTTTCTATTTCTCGGATAGATTTATCAAGCATCCGC
 
. : . : . : . : . : . :
JMFN012O16+ TTGTTCTCCCGTAGAAGCTCTGCGGGAGTTTTCTTCTTGCCGAAGAGGAAACTCATCGCG
rJMCP005A09+ TTGTTCTCCCcaAGAAGCaCTGCGGGAGaTTagaTCaacCCGAAGAGGAAACTCATCGCG
rJMCP004C11+ TTGTTCTCCgcaAGAAGCaCTGCGGGAGTTTagaTCTTGCCGAAGAGGAAACTCATCGCG
JMCP008H03+ CGAAGAGGAAACTCATCGCG
JMCP010C12+ aacTTCTCCgcatGAAGCaCTGCGGGAtaaaagaagaacggcAAGAGGAAtgaCAagGCG
                      ____________________________________________________________
consensus TTGTTCTCCCGTAGAAGCTCTGCGGGAGTTTTCTTCTTGCCGAAGAGGAAACTCATCGCG
 
. : . : . : . : . : . :
JMFN012O16+ ATTGTTGGAACGATCGATTCTGCAAGCAAAACAAAAAAACTGTACTGAAGGAGGAGAAGT
rJMCP005A09+ taacaacGAACGAaCGATaCacgttcCAAAACtttAAAAgaGTtgaGAAGGAGGAGAAGT
rJMCP004C11+ taaGaacGAACGAaCGATTCaGCAtcCAAAACAAAAAAAgaGTACTGAAGGAGGAGAAGT
JMCP008H03+ AaaGTTGGAACGATCGATTCTcgttcCAAAACAAAAAAACTGTACTGAAGGAGGAGAAGT
JMCP010C12+ taacaacGtAgctaCctaagacgttcgAAAACtttAAAtgacTtgacttcctcctcttca
                      ____________________________________________________________
consensus ATTGTTGGAACGATCGATTCTGCAAGCAAAACAAAAAAACTGTACTGAAGGAGGAGAAGT
 
. : . : . : . : . : . :
JMFN012O16+ CCTCTTCA
rJMCP005A09+ CCagTTCAGCtctATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAGCTCAAGTCGTCT
rJMCP004C11+ CCTCTTCAGCAcAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAGCTCAAGTCGTCT
JMCP008H03+ CCTCTTCAGCtctATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAGCTCAAGTCGTCT
JMCP010C12+ ggagTTCtcgtcttaaCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAGCTCAAGTCGTCT
                      ____________________________________________________________
consensus CCTCTTCAGCAGAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAGCTCAAGTCGTCT
 
. : . : . : . : . : . :
rJMCP005A09+ ACCACTATTTCTCTGGGAGAAGAATGATCTTTTGGAGGCTTACGTATTACGCGGCAAAAG
rJMCP004C11+ ACCACTATTTCTCTGGGAGAAGAATGATCTTTTGGAGGCTTACGTATTACGCGGCAAAAG
JMCP008H03+ ACCACTATTTCTCTGGGAGAAGAATGATCTTTTGGAGGCTTACGTATTACGCGGCAAAAG
JMCP010C12+ ACCACTATTTCTCTGGGAGAAGAATGATCTTTTGGAGGCTTACGTATTACGCGGCAAAAG
                      ____________________________________________________________
consensus ACCACTATTTCTCTGGGAGAAGAATGATCTTTTGGAGGCTTACGTATTACGCGGCAAAAG