Contig 005858:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006N23Sequence387011740 (4)gb|AGB05603.1|5e-56squalene synthase [Camellia oleifera]347005858 (3)
JMSF039K01Sequence660011740 (4)ref|XP_008236983.1|4e-111PREDICTED: squalene synthase-like [Prunus mume]855005858 (3)gb|ADW78251.1|3e-90squalene synthase [Withania somnifera] gb|ADO22708.1| squalene synthase [Withani
JMSF053G19Sequence624011740 (4)ref|XP_008236983.1|2e-111PREDICTED: squalene synthase-like [Prunus mume]897005858 (3)gb|ADW78251.1|6e-127squalene synthase [Withania somnifera] gb|ADO22708.1| squalene synthase [Withani

Alignment

This contig is upended


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rJMSF053G19+             TTAGCTTCAGATCATATCTCCAACTCAATGGGTTTGTTCCTCCAGAAAACAAACATC
                      ____________________________________________________________
consensus                TTAGCTTCAGATCATATCTCCAACTCAATGGGTTTGTTCCTCCAGAAAACAAACATC
 
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rJMSF053G19+          ATTAGAGATTACCTTGAGGACATTAATGAGATACCAAAGTCTCGAATGTTTTGGCCCCGT
                      ____________________________________________________________
consensus             ATTAGAGATTACCTTGAGGACATTAATGAGATACCAAAGTCTCGAATGTTTTGGCCCCGT
 
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rJMSF039K01+                                                     ATGAGGAGAATTCAGTC
rJMSF053G19+          CAAATCTGGAGTAAATATGTCAATAAACTTGAGGATTTAAAAGATGAGGAGAATTCAGTC
                      ____________________________________________________________
consensus             CAAATCTGGAGTAAATATGTCAATAAACTTGAGGATTTAAAAGATGAGGAGAATTCAGTC
 
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rJMSF039K01+          AAGGCAGTGCAGTGCCTGAATGACATGGTCACAAATGCTTTATCACATGTAGAGGATTGT
rJMSF053G19+          AAGGCAGTGCAGTGCCTGAATGACATGGTCACAAATGCTTTATCACATGTAGAGGATTGT
                      ____________________________________________________________
consensus             AAGGCAGTGCAGTGCCTGAATGACATGGTCACAAATGCTTTATCACATGTAGAGGATTGT
 
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rJMSF039K01+          TTGACTTACATGTCTGCTTTGCGAGATCCTTCCATCTTTAGGTTTTGTGCTATTCCACAG
rJMSF053G19+          TTGACTTACATGTCTGCTTTGCGAGATCCTTCCATCTTTAGGTTTTGTGCTATTCCACAG
                      ____________________________________________________________
consensus             TTGACTTACATGTCTGCTTTGCGAGATCCTTCCATCTTTAGGTTTTGTGCTATTCCACAG
 
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rJMSF039K01+          ATCATGGCCATCGGAACATTAGCCATGTGCTACAACAATATTGAAGTCTTCAGGGGTGTT
rJMSF053G19+          ATCATGGCCATCGGAACATTAGCCATGTGCTACAACAATATTGAAGTCTTCAGGGGTGTT
                      ____________________________________________________________
consensus             ATCATGGCCATCGGAACATTAGCCATGTGCTACAACAATATTGAAGTCTTCAGGGGTGTT
 
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rJMSF039K01+          GTAAAGATGAGACGTGGTCTTACTGCTAAGGTCATTGACCGGACCAAGACAATGGCAGAT
rJMSF053G19+          GTAAAGATGAGACGTGGTCTTACTGCTAAGGTCATTGACCGGACCAAGACAATGGCAGAT
                      ____________________________________________________________
consensus             GTAAAGATGAGACGTGGTCTTACTGCTAAGGTCATTGACCGGACCAAGACAATGGCAGAT
 
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rJMSF039K01+          GTCTATGGTGCTTTTTTTGACTTTTCTTGTATGCTGATGTCAAAGGTTGACTACAATGAT
rJMSF053G19+          GTCTATGGTGCTTTTTTTGACTTTTCTTGTATGCTGATGTCAAAGGTTGACTACAATGAT
                      ____________________________________________________________
consensus             GTCTATGGTGCTTTTTTTGACTTTTCTTGTATGCTGATGTCAAAGGTTGACTACAATGAT
 
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rJMSF039K01+          CCTAGTGCAACCAAAACTGTGAAGAGGCTTGAAGCAATTCTGAAGACTTGCAGGGAGTCT
rJMSF053G19+          CCTAGTGCAACCAAAACTGTGAAGAGGCTTGAAGCAATTCTGAAGACTTGCAGGGAGTCT
                      ____________________________________________________________
consensus             CCTAGTGCAACCAAAACTGTGAAGAGGCTTGAAGCAATTCTGAAGACTTGCAGGGAGTCT
 
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rJMSF006N23+                               TCTTACATTATTATGAGGAGGAGCAAGCCCAATTACTCT
rJMSF039K01+          GGAACCTTGAATAAGAGGCAATCTTACATTATTATGAGGAGGAGCAAGCCCAATTACTCT
rJMSF053G19+          GGAACCTTGAATAAGAGGCAATCTTACATTATTATGAGGAGGAGCAAGCCCAATTACTCT
                      ____________________________________________________________
consensus             GGAACCTTGAATAAGAGGCAATCTTACATTATTATGAGGAGGAGCAAGCCCAATTACTCT
 
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rJMSF006N23+          CCAGCTGTGATTGTCTTCTTTATCATTCTGGCTGTTCTTGTGTACCATTTTGGAAACCAG
rJMSF039K01+          CCAGCTTTGATTGTCTTCTTTATCATTCTGGCTGTTCTTGTGTACCATTTTGGAAACCAG
rJMSF053G19+          CCAGCTTTGATTGTCTTCTTTATCATTCTGGCTGTTCTTGTGTACCATTTTGGAAACCAG
                      ____________________________________________________________
consensus             CCAGCTTTGATTGTCTTCTTTATCATTCTGGCTGTTCTTGTGTACCATTTTGGAAACCAG
 
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rJMSF006N23+          CGTACTTTCGCATGAATGATGTTATTAGGAGATTAAAAGGAAGTATTAAGCTCACCTTTT
rJMSF039K01+          CGTACTTTCGCATGAATGATGTTATTAGGAGATTAAAAGGAAGTATTAAGCTCACCTTTT
rJMSF053G19+          CGTACTTTCGCATGAATGATGTTATTAGGAGATTAAAAGGAAGTATTAAGCTCACCTTTT
                      ____________________________________________________________
consensus             CGTACTTTCGCATGAATGATGTTATTAGGAGATTAAAAGGAAGTATTAAGCTCACCTTTT
 
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rJMSF006N23+          CACTATCCCTATAAGCTTGCAGGAAACCAGCAGAATAAAGA-AGTGTGTTCTTTGGTTTC
rJMSF039K01+          CACTATCCCTATAAGCTTGCAGGAAACCAGCAGAATAAAGA-AGTGTGTTCTTTGGTTTC
rJMSF053G19+          CACTATCCCTATAAGCTTGCAGGAAACCAGCAGAATAAAGANAGCGTGTTCTTTGGTTTC
                      ____________________________________________________________
consensus             CACTATCCCTATAAGCTTGCAGGAAACCAGCAGAATAAAGA-AGTGTGTTCTTTGGTTTC
 
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rJMSF006N23+          TATNAGTATTNTGGNTCATATTATGATGTAAAGCTCNCATGCTAGNTATTAC        
rJMSF039K01+          TATTAGTATTTTGGGTCATATTATGATGTAAAGCTCACATGCTAGTTATTAC        
rJMSF053G19+          TATTAGTATTTTGGGTCATATTATGATGTAAAGCTCACATGCTAGTTATTACAGTACTTA
                      ____________________________________________________________
consensus             TATTAGTATTTTGGGTCATATTATGATGTAAAGCTCACATGCTAGTTATTACAGTACTTA
 
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rJMSF053G19+          TTACAACATTATAGTAGGTTTCTCGTTGTGCTGTGCTGTGCTGTCCAGATGTTATGTAAA
                      ____________________________________________________________
consensus             TTACAACATTATAGTAGGTTTCTCGTTGTGCTGTGCTGTGCTGTCCAGATGTTATGTAAA