Contig 005857:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017H09Sequence532005857 (6)emb|CDP18653.1|1e-20unnamed protein product [Coffea canephora]713005857 (6)ref|XP_010653794.1|5e-39PREDICTED: remorin-like [Vitis vinifera]
JMSF045K24Sequence431005857 (6)emb|CDP18653.1|8e-21unnamed protein product [Coffea canephora]693005857 (6)ref|XP_010653794.1|2e-38PREDICTED: remorin-like [Vitis vinifera]
JMSF052N20Sequence571005857 (6)gb|KDP26032.1|2e-46hypothetical protein JCGZ_21065 [Jatropha curcas]862005857 (6)ref|XP_010653794.1|9e-44PREDICTED: remorin-like [Vitis vinifera]

Alignment

This contig is upended


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JMFF017H09-            ACCACTTTGCACAACCAGCCACCACACACTAACTCCCCCAAAGAAAAAAAACCAGAAAA
                      ____________________________________________________________
consensus              ACCACTTTGCACAACCAGCCACCACACACTAACTCCCCCAAAGAAAAAAAACCAGAAAA
 
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JMSF045K24-                            ATCCAACACAATATGTCGCTGAATGATCAACTGCAACTAGCCA
JMFF017H09-           AAACAAATCCCCCATCCATCCAACACAATATGTCGCTGAATGATCAACTGCAACTAGCCA
JMSF052N20-                                        ATGTCGCTGAATGATCAACTGCAACTAGCCA
                      ____________________________________________________________
consensus             AAACAAATCCCCCATCCATCCAACACAATATGTCGCTGAATGATCAACTGCAACTAGCCA
 
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JMSF045K24-           TCGCAAGCACCAGCCACCATGATGAAGAAGAAGAACACGTTAGGGACATCCACGCTCTGA
JMFF017H09-           TCGCAAGCACCAGCCACCATGATGAAGAAGAAGAACACGTTAGGGACATCCACGCTCTGA
JMSF052N20-           TCGCAAGCACCAGCCACCATGATGAAGAAGAAGAACACGTTAGGGACATCCACGCTCTGA
                      ____________________________________________________________
consensus             TCGCAAGCACCAGCCACCATGATGAAGAAGAAGAACACGTTAGGGACATCCACGCTCTGA
 
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JMSF045K24-           GCCCGCCCCCAGTACCCCCGCCGCCGGAGAACAACCGTGCCGCCCGCCTCAGATCCTCGT
JMFF017H09-           GCCCGCCCCCAGTACCCCCGCCGCCGGAGAACAACCGTGCCGCCCGCCTCAGATCCTCGT
JMSF052N20-           GCCCGCCCCCAGTACCCCCGCCGCCGGAGAACAACCGTGCCGCCCGCCTCAGATCCTCGT
                      ____________________________________________________________
consensus             GCCCGCCCCCAGTACCCCCGCCGCCGGAGAACAACCGTGCCGCCCGCCTCAGATCCTCGT
 
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JMSF045K24-           CGTCTCTCTCCATCGCTAGCACAGAAGGCGCGCCGTCGGAGAACTTCACCACCATGAGCC
JMFF017H09-           CGTCTCTCTCCATCGCTAGCACAGAAGGCGCGCCGTCGGAGAACTTCACCACCATGAGCC
JMSF052N20-           CGTCTCTCTCCATCGCTAGCACAGAAGGCGCGCCGTCGGAGAACTTCACCACCATGAGCC
                      ____________________________________________________________
consensus             CGTCTCTCTCCATCGCTAGCACAGAAGGCGCGCCGTCGGAGAACTTCACCACCATGAGCC
 
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JMSF045K24-           GGGAGTTTAACGCCCTGGTCCTCGCCGGATCCTCTTTTAATCCCAACAACGTTAATGGCG
JMFF017H09-           GGGAGTTTAACGCCCTGGTCCTCGCCGGATCCTCTTTTAATCCCAACAACGTTAATGGCG
JMSF052N20-           GGGAGTTTAACGCCCTGGTCCTCGCCGGATCCTCTTTTAATCCCAACAACGTTAATGGCG
rJMSF052N20+                                                AATCCCAACAACGTTAATGGCG
                      ____________________________________________________________
consensus             GGGAGTTTAACGCCCTGGTCCTCGCCGGATCCTCTTTTAATCCCAACAACGTTAATGGCG
 
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JMSF045K24-           CCGAACATGACGGCGGCCCCAACAACCAGCTGGGACGGATT-GGGGAGGATGAACCCCCG
JMFF017H09-           CCGAACATGACGGCGGCCCCAACAACCAGCTGGGACGGATT-GGGGAGGATGAACCCCCG
JMSF052N20-           CCGAACATGACGGCGGCCCCAACAACCAGCTGGGACGGATT-GGGGAGGATGAACCCCCG
rJMSF052N20+          CCGAACATGACGGCNGCCCCAACAACCAGCTGGGACGGATTGGGGGAGGATGAACCCCCG
                      ____________________________________________________________
consensus             CCGAACATGACGGCGGCCCCAACAACCAGCTGGGACGGATT-GGGGAGGATGAACCCCCG
 
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JMSF045K24-           GAACAGGAGACCAACCCTCTAGCGATTGTGCCGGATATGGCGTCCTCGTCGCCTCGANGC
JMFF017H09-           GAACAGGAGACCAACCCTCTAGCGATTGTGCCGGATATGGCGTCCTCGTCGCCTCGACGC
JMSF052N20-           GAACAGGAGACCAACCCTCTAGCGATTGTGCCGGATATGGCGTCCTCGTCGCCTCGACGC
rJMFF017H09+                                                            GCCTCGACGC
rJMSF045K24+                                                                CGACGC
rJMSF052N20+          GAACAGGAGACCAACCCTCTAGCGATTGTGCCGGATATGGCGTCCTCGTCGCCTCGACGC
                      ____________________________________________________________
consensus             GAACAGGAGACCAACCCTCTAGCGATTGTGCCGGATATGGCGTCCTCGTCGCCTCGACGC
 
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JMSF045K24-           GGCGGAGCCGCCGCNGGTGGGGCTTCCA                                
JMFF017H09-           GGCGGAGCCGCCGCCGGTGGGGCTTCCACTGTGAGCGGCGAAGTAACGGTGCAG      
JMSF052N20-           GGCGGAGCCGCCGCCGGTGGGGCTTCCACTGTGAGCGGCGAAGTAACGGTGCAGAGGGTG
rJMFF017H09+          GGCGGAGCCGCCGCCGGTGGGGCTTCCACTGTGAGCGGCGAAGTAACGGTGCAGAGGGTG
rJMSF045K24+          GGCGGAGCCGCCGCCGGTGGGGCTTCCACTGTGAGCGGCGAAGTAACGGTGCAGAGGGTG
rJMSF052N20+          GGCGGAGCCGCCGCCGGTGGGGCTTCCACTGTGAGCGGCGAAGTAACGGTGCAGAGGGTG
                      ____________________________________________________________
consensus             GGCGGAGCCGCCGCCGGTGGGGCTTCCACTGTGAGCGGCGAAGTAACGGTGCAGAGGGTG
 
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JMSF052N20-           AAGAAAGAGGAGGTTGAGTCGAAGATTAGCGCGTGGCAAACTGCGAAAATTGCAAAGATC
rJMFF017H09+          AAGAAAGAGGAGGTTGAGTCGAAGATTAGCGCGTGGCAAACTGCGAAAATTGCAAAGATC
rJMSF045K24+          AAGAAAGAGGAGGTTGAGTCGAAGATTAGCGCGTGGCAAACTGCGAAAATTGCAAAGATC
rJMSF052N20+          AAGAAAGAGGAGGTTGAGTCGAAGATTAGCGCGTGGCAAACTGCGAAAATTGCAAAGATC
                      ____________________________________________________________
consensus             AAGAAAGAGGAGGTTGAGTCGAAGATTAGCGCGTGGCAAACTGCGAAAATTGCAAAGATC
 
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JMSF052N20-           AATAACAGGTTTAAGCGGGAAGATGCGATCATTAATGGGTGGGAGAGTGAAGAAGTTCAG
rJMFF017H09+          AATAACAGGTTTAAGCGGGAAGATGCGATCATTAATGGGTGGGAGAGTGAAGAAGTTCAG
rJMSF045K24+          AATAACAGGTTTAAGCGGGAAGATGCGATCATTAATGGGTGGGAGAGTGAAGAAGTTCAG
rJMSF052N20+          AATAACAGGTTTAAGCGGGAAGATGCGATCATTAATGGGTGGGAGAGTGAAGAAGTTCAG
                      ____________________________________________________________
consensus             AATAACAGGTTTAAGCGGGAAGATGCGATCATTAATGGGTGGGAGAGTGAAGAAGTTCAG
 
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rJMFF017H09+          AAAGCAAATTCTTGGATGAAGAAAGTTGAGAGAAAACTGGAAGAGAAGAGAGCGAAAGCA
rJMSF045K24+          AAAGCAAATTCTTGGATGAAGAAAGTTGAGAGAAAACTGGAAGAGAAGAGAGCGAAAGCA
rJMSF052N20+          AAAGCAAATTCTTGGATGAAGAAAGTTGAGAGAAAACTGGAAGAGAAGAGAGCGAAAGCA
                      ____________________________________________________________
consensus             AAAGCAAATTCTTGGATGAAGAAAGTTGAGAGAAAACTGGAAGAGAAGAGAGCGAAAGCA
 
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rJMFF017H09+          TTAGAAAAGATGCAAAACGACATAGCAAAAGCGCGAAGAAAAGCAGAAGAAAGAAGGGCA
rJMSF045K24+          TTAGAAAAGATGCAAAACGACATAGCAAAAGCGCGAAGAAAAGCAGAAGAAAGAAGGGCA
rJMSF052N20+          TTAGAAAAGATGCAAAACGACATAGCAAAAGCGCGAAGAAAAGCAGAAGAAAGAAGGGCA
                      ____________________________________________________________
consensus             TTAGAAAAGATGCAAAACGACATAGCAAAAGCGCGAAGAAAAGCAGAAGAAAGAAGGGCA
 
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rJMFF017H09+          TCGGCTGAGGCAACGAGGGGAACAAAGGTGGCAAGAGTTCTTGAGATATCCAACCTCATG
rJMSF045K24+          TCGGCTGAGGCAACGAGGGGAACAAAGGTGGCAAGAGTTCTTGAGATATCCAACCTCATG
rJMSF052N20+          TCGGCTGAGGCAACGAGGGGAACAAAGGTGGCAAGAGTTCTTGAGATATCCAACCTCATG
                      ____________________________________________________________
consensus             TCGGCTGAGGCAACGAGGGGAACAAAGGTGGCAAGAGTTCTTGAGATATCCAACCTCATG
 
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rJMFF017H09+          AGAGCTGTGGGTAGAGCTCCTGTCAAGCGTTCCTTCTTCTAGCTAGCTAGCTTCCTTTCT
rJMSF045K24+          AGAGCTGTGGGTAGAGCTCCTGTCAAGCGTTCCTTCTTCTAGCTAGCTAGCTTCCTTTCT
rJMSF052N20+          AGAGCTGTGGGTAGAGCTCCTGTCAAGCGTTCCTTCTTCTAGCTAGCTAGCTTCCTTTCT
                      ____________________________________________________________
consensus             AGAGCTGTGGGTAGAGCTCCTGTCAAGCGTTCCTTCTTCTAGCTAGCTAGCTTCCTTTCT
 
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rJMFF017H09+          TAATTAGCTTATTTCTATTTCTATTTCTATTAGTATACAATAAATAATATGCATATAGGG
rJMSF045K24+          TAATTAGCTTATTTCTATTTCTATTTCTATTAGTATACAATAAATAATATGCATATAGGG
rJMSF052N20+          TAATTAGCTTATTTCTATTTCTATTTCTATTAGTATACAATAAATAATATGCATATAGGG
                      ____________________________________________________________
consensus             TAATTAGCTTATTTCTATTTCTATTTCTATTAGTATACAATAAATAATATGCATATAGGG
 
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rJMFF017H09+          TGACCCTTTTCTCATTTTTACCACTCACTGGGTACCCTATTTTGCATGCCTTGATGAAAA
rJMSF045K24+          TGACCCTTTTCTCATTTTTACCACTCACTGGGTACCCTATTTTGCATGCCTTGATGAAAA
rJMSF052N20+          TGACCCTTTTCTCATTTTTACCACTCACTGGGTACCCTATTTTGCATGCCTTGATGAAAA
                      ____________________________________________________________
consensus             TGACCCTTTTCTCATTTTTACCACTCACTGGGTACCCTATTTTGCATGCCTTGATGAAAA
 
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rJMFF017H09+          TTAAAAGATGAGAAGAATATAATGGAGTGCATGAAATGAAAGTGTATGTGTGCTAGATAG
rJMSF045K24+          TTAAAAGATGAGAAGAATATAATGGAGTGCATGAAATGAAAGTGTATGTGTGCTAGATAG
rJMSF052N20+          TTAAAAGATGAGAAGAATATAATGGAGTGCATGAAATGAAAGTGTATGTGTGCTAGATAG
                      ____________________________________________________________
consensus             TTAAAAGATGAGAAGAATATAATGGAGTGCATGAAATGAAAGTGTATGTGTGCTAGATAG
 
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rJMFF017H09+          CTTAATTAGCTTGTAATTGATCTGGTCATGAACTCCTGTGAGTGTTGAGTCTTGGTTTGG
rJMSF045K24+          CTTAATTAGCTTGTAATTGATCTGGTCATGAACTCCTGTGAGTGTTGAGTCTTGGTTTGG
rJMSF052N20+          CTTAATTAGCTTGTAATTGATCTGGTCATGAACTCCTGTGAGTGTTGAGTCTTGGTTTGG
                      ____________________________________________________________
consensus             CTTAATTAGCTTGTAATTGATCTGGTCATGAACTCCTGTGAGTGTTGAGTCTTGGTTTGG
 
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rJMFF017H09+          TTTGGTTTGTACAGATTTTTGGATACCTACCATCCACGTACAT                 
rJMSF045K24+          TTTGGTTTGTACAGATTTTTGGATACC                                 
rJMSF052N20+          TTTGGTTTGTACAGATTTTTGGATACCTACCATCCACGTACATGTAATTTCTAAACACTT
                      ____________________________________________________________
consensus             TTTGGTTTGTACAGATTTTTGGATACCTACCATCCACGTACATGTAATTTCTAAACACTT