Contig 005854:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF026M03Sequence672010411 (6)ref|XP_009371612.1|1e-28PREDICTED: U-box domain-containing protein 5-like [Pyrus x bretschneideri] ref|X697005854 (2)ref|XP_009603280.1|4e-25PREDICTED: U-box domain-containing protein 5 [Nicotiana tomentosiformis] ref|XP_
JMSF052I09Sequence473024303942005854 (2)ref|XP_009603280.1|2e-54PREDICTED: U-box domain-containing protein 5 [Nicotiana tomentosiformis] ref|XP_

Alignment

This contig is upended


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rJMSF052I09+                            GGGATTTGTTGGAGCCGTCCATCAGAATACTCTTCAACTTGT
                      ____________________________________________________________
consensus                               GGGATTTGTTGGAGCCGTCCATCAGAATACTCTTCAACTTGT
 
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rJMSF052I09+          CTGGAAACGACAACATCCGGCTTTTATTCGTGCCCTCCGAGCTGATCCCGAGATTGATTC
                      ____________________________________________________________
consensus             CTGGAAACGACAACATCCGGCTTTTATTCGTGCCCTCCGAGCTGATCCCGAGATTGATTC
 
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rJMSF052I09+          CGTTCTTCAACGATGCCTGTCTCGCGAGATATTCCTTAGCCATCTTGAAAAACCTGTGCA
                      ____________________________________________________________
consensus             CGTTCTTCAACGATGCCTGTCTCGCGAGATATTCCTTAGCCATCTTGAAAAACCTGTGCA
 
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rJMSF052I09+          ACAACCAAGATGCTAGAATCTCTGTCGCTGAGACCGACGGGTGCATTGCTTCTGTGGCGA
                      ____________________________________________________________
consensus             ACAACCAAGATGCTAGAATCTCTGTCGCTGAGACCGACGGGTGCATTGCTTCTGTGGCGA
 
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rJMSF026M03+               CTGGATAGCGAAAATCTCGAGAACCAAGAGCATGCAGTGGCCGTTCTTCTTTCAT
rJMSF052I09+          AGCTACTGGATAGCGAAAATCTCGAGAACCAAGAGCATGCAGTGGCCGTTCTTCTTTCAT
                      ____________________________________________________________
consensus             AGCTACTGGATAGCGAAAATCTCGAGAACCAAGAGCATGCAGTGGCCGTTCTTCTTTCAT
 
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rJMSF026M03+          TGTGCTCTCAAAGATCTCAATATTGCGACCTCGTTATGGCTGAGGGGGTTATCCCCGACC
rJMSF052I09+          TGTGCTCTCAAAGATCTCAATATTGCGACCTCGTTATGGCTGAGGGGGTTATCCCCGACC
                      ____________________________________________________________
consensus             TGTGCTCTCAAAGATCTCAATATTGCGACCTCGTTATGGCTGAGGGGGTTATCCCCGACC
 
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rJMSF026M03+          TCGTTAGTATATCCCTCAACGGGAATAGCAAAGGAAAGGCAATGGCTTCAGAAATGCTGC
rJMSF052I09+          TCGTTAGTATATCCCTCAACGGGAATAGCAAAGGAAAGGCAATGGCTTCAGAAATGCTGC
                      ____________________________________________________________
consensus             TCGTTAGTATATCCCTCAACGGGAATAGCAAAGGAAAGGCAATGGCTTCAGAAATGCTGC
 
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rJMSF026M03+          GGATCTTGAGAGACGAATGCCACAGCATCGGAGAACCTTCCCAACCCGACACCAATGCCA
rJMSF052I09+          GGATCTTGAGAGACGAATGCCACAGCATCGGAGAACCTTCCCAACCCGACACCAATGCCA
                      ____________________________________________________________
consensus             GGATCTTGAGAGACGAATGCCACAGCATCGGAGAACCTTCCCAACCCGACACCAATGCCA
 
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rJMSF026M03+          CTAGATACACCGCCACTGCCAATGGCGGCAACGACTCTACGGAGAGAAGACCATCAACCA
rJMSF052I09+          CTAGATACACCGCCACTGCCAATGGCGGCAACGACTCTACGGAGAGAAGACCATCAACCA
                      ____________________________________________________________
consensus             CTAGATACACCGCCACTGCCAATGGCGGCAACGACTCTACGGAGAGAAGACCATCAACCA
 
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rJMSF026M03+          AGCCAACAGGAATTCTCGGGAAATTGTTCGCTGCAAAAAGGAGAAGGTAGGAACCGGATA
rJMSF052I09+          AGCCAACAGGAATTCTCGGGAAATTGTTCGCTGCAAAAAGGAGAAGGTAGGAACCGGATA
                      ____________________________________________________________
consensus             AGCCAACAGGAATTCTCGGGAAATTGTTCGCTGCAAAAAGGAGAAGGTAGGAACCGGATA
 
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rJMSF026M03+          TCCTCTCTTCTTATTCTAGGACAAGATACTAACTATCCTCGGGATTAACACCTAGGAGCA
rJMSF052I09+          TCCTCTCTTCTTATTCTAGGACAAGATACTAACTATCCTCGGGATTAACACCTAGGAGCA
                      ____________________________________________________________
consensus             TCCTCTCTTCTTATTCTAGGACAAGATACTAACTATCCTCGGGATTAACACCTAGGAGCA
 
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rJMSF026M03+          AGACCACTCAACGCGCGCTAAGGTATTGATTAAAGCCGAATATGTACAGTTCTGCATAAT
rJMSF052I09+          AGACCACTCAACGCGCGCTAAGGTATTGATTAAAGCCGAATATGTACAGTTCTGCATAAT
                      ____________________________________________________________
consensus             AGACCACTCAACGCGCGCTAAGGTATTGATTAAAGCCGAATATGTACAGTTCTGCATAAT
 
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rJMSF026M03+          ATGAAGTGGGATTTGCTTATTATGTTATTGTGGTTAGATGAGAAGATATTGCTATTAGTG
rJMSF052I09+          ATGAAGTGGGATTTGCTTATTATGTTATTGTGGTTAGATGAGAAGATATTGCTATTAGTG
                      ____________________________________________________________
consensus             ATGAAGTGGGATTTGCTTATTATGTTATTGTGGTTAGATGAGAAGATATTGCTATTAGTG
 
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rJMSF026M03+          AAGTAAAATTTGTGTATATGAATTAGGAGTGTAGATGGGTATAGGTTTGGAAGTATTAGG
rJMSF052I09+          AAGTAAAATTTGTGTATATGAATTAGGAGTGTAGATGGGTATAGGTTTGGAAGTATTAGG
                      ____________________________________________________________
consensus             AAGTAAAATTTGTGTATATGAATTAGGAGTGTAGATGGGTATAGGTTTGGAAGTATTAGG
 
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rJMSF026M03+          TGGAAAAATCCCATTTAGTATAGTGATCTGCAAATGGATGAGAGTTGCAGATTCTTGAGA
rJMSF052I09+          TGGAAAAATCCCATTTAGTATAGTGATCTGCAAATGGATGAGAGTTGCAGATTCTTGAGA
                      ____________________________________________________________
consensus             TGGAAAAATCCCATTTAGTATAGTGATCTGCAAATGGATGAGAGTTGCAGATTCTTGAGA
 
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rJMSF026M03+          TGGGTGCTTCATTATATGCTGTAGATCAATGAAGTCTGTTTT                  
rJMSF052I09+          TGGGTGCTTCATTATATGCTGTAGATCAATGAAGTCTGTTTTGTATATGATGACAATCTA
                      ____________________________________________________________
consensus             TGGGTGCTTCATTATATGCTGTAGATCAATGAAGTCTGTTTTGTATATGATGACAATCTA