Contig 005851:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF052F17+                                                           TGAGTCATTTT
                      ____________________________________________________________
consensus                                                              TGAGTCATTTT
 
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rJMSF052F17+          TGAATATGCAGCTTTACGAAAAAGCATTGGATCTGTTTGAAGACGACCAATCAACCTCAA
                      ____________________________________________________________
consensus             TGAATATGCAGCTTTACGAAAAAGCATTGGATCTGTTTGAAGACGACCAATCAACCTCAA
 
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rJMSF052F17+          TTCTTCTCCACAAACATTTGTTGCGAACTACAGGAACCTTTATGGTGGATACTTTGCTTC
                      ____________________________________________________________
consensus             TTCTTCTCCACAAACATTTGTTGCGAACTACAGGAACCTTTATGGTGGATACTTTGCTTC
 
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rJMSF052F17+          TTAACCTGGATGTGCACAATAAATTGAAAAATGGAATTGAAGTTGATGAGTCTCAAAATC
                      ____________________________________________________________
consensus             TTAACCTGGATGTGCACAATAAATTGAAAAATGGAATTGAAGTTGATGAGTCTCAAAATC
 
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rJMSF052F17+          GTGAACCTGCTTCACTTAACTCTGGGGATAGAAATGCTCTTGCCAAGAGTCTCCCAGGAC
                      ____________________________________________________________
consensus             GTGAACCTGCTTCACTTAACTCTGGGGATAGAAATGCTCTTGCCAAGAGTCTCCCAGGAC
 
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rJMSF052F17+          CACTGTCTGTCAAGGCAACTGCCCTACTTGAAGCTTTGGAAGGGAAGCGGGTGGAAATGT
                      ____________________________________________________________
consensus             CACTGTCTGTCAAGGCAACTGCCCTACTTGAAGCTTTGGAAGGGAAGCGGGTGGAAATGT
 
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rJMSF052F17+          TCATGACTGCACTAAGAGCTCTGGCAGAGGAAAGCGGATTAATTCTGAAGAAGCTGGATA
                      ____________________________________________________________
consensus             TCATGACTGCACTAAGAGCTCTGGCAGAGGAAAGCGGATTAATTCTGAAGAAGCTGGATA
 
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rJMSF052F17+          AGAAATTGGAGAGGACCCTTCTGCATTCATATCGCAAGGATCTGACAACTCAAGTTTCTG
                      ____________________________________________________________
consensus             AGAAATTGGAGAGGACCCTTCTGCATTCATATCGCAAGGATCTGACAACTCAAGTTTCTG
 
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rJMSF003E18+                 TGATGCAGTTTCGCTTTTACCAAAAGTNGTTTNTATACTTTATGTACAGGTTC
rJMSF052F17+          CTGAAACTGATGCAGTTTCACTTTTACCAAAAGTTGTTTCTCTACTTTATGTACAGGTTC
                      ____________________________________________________________
consensus             CTGAAACTGATGCAGTTTCGCTTTTACCAAAAGTTGTTTCTCTACTTTATGTACAGGTTC
 
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rJMSF003E18+          ATGGAAAAGCACTTCAGGCTCCTGGCAGGGCCATTTCTGNTGCTGTCTCTGGGTTAAAGG
rJMSF052F17+          ATGGAAAAGCACTTCAGGCTCCTGGCAGGGCCATTTCTGCTGCTGTCTCTGGTTTAAAGG
                      ____________________________________________________________
consensus             ATGGAAAAGCACTTCAGGCTCCTGGCAGGGCCATTTCTGCTGCTGTCTCTGGTTTAAAGG
 
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rJMSF003E18+          ATAAGCTGGATGATTCCGCATTCAAGACCCNGACAGATTNCCAGAGCACAACAGTGAGCC
rJMSF052F17+          ATAAGCTGGATGATTCCGCATTCAAGACCCTGACAGATTACCAGAGCACAACAGTGAGCC
                      ____________________________________________________________
consensus             ATAAGCTGGATGATTCCGCATTCAAGACCCTGACAGATTACCAGAGCACAACAGTGAGCC
 
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rJMSF003E18+          TTTTGTCACTAATGTCTGCTGCAACTGGNGATGAAGAAGATTGCTCGTCGGATAGAATCC
rJMSF052F17+          TTTCGTCACTAATGTCTGCTGCAACTGGTGATGAAGAAGATTGCTCGTCGGATAGAATCC
                      ____________________________________________________________
consensus             TTTTGTCACTAATGTCTGCTGCAACTGGTGATGAAGAAGATTGCTCGTCGGATAGAATCC
 
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rJMSF003E18+          AAACCAAAAGGGAGGTTCTGGAGGGTNTGATGCCTGCATTGAAAGGCTTAGTGTTGAGTA
rJMSF052F17+          AAACCAAAAGGGAGGTTCTGGAGGGTTTGATGCCTGCATTGAAAGGCTTAGTGTTGAGTA
                      ____________________________________________________________
consensus             AAACCAAAAGGGAGGTTCTGGAGGGTTTGATGCCTGCATTGAAAGGCTTAGTGTTGAGTA
 
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rJMSF003E18+          GTCAACAGTCTATGACTGTGTTGTNGAAATNGTTNTACTAACTCCAGTTTGAAGCAAAAG
rJMSF052F17+          GTCAACAGTC--TTGATGTGTTGTAGAAATAGTTTTACTAACTCCAGTTTGAAGCAAAAG
                      ____________________________________________________________
consensus             GTCAACAGTCTATTGCTGTGTTGTAGAAATAGTTTTACTAACTCCAGTTTGAAGCAAAAG
 
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rJMSF003E18+          GAATCNTGTGTTTCCTTCTGCGGAAAATGTGACAACCCGAT                   
rJMSF052F17+          GAA-CTTGTGTTTCCTTCTGCGGAAAATGTGACAACCCGATAGATTTCTTGTTCACAAAT
                      ____________________________________________________________
consensus             GAATCTTGTGTTTCCTTCTGCGGAAAATGTGACAACCCGATAGATTTCTTGTTCACAAAT