Contig 005850:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF050L03Sequence685006743 (3)ref|XP_011078428.1|3e-63PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570776005850 (2)ref|XP_006358123.1|2e-39PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570
JMSF052F06Sequence720006743 (3)emb|CDP06347.1|1e-63unnamed protein product [Coffea canephora]958005850 (2)ref|XP_009604301.1|2e-77PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF052F06+ CAANGGTCATTAGTGTTGCTCTAACTTAGACTTTAAAGCACTCATACTTCAGTACATGCC
                      ____________________________________________________________
consensus CAANGGTCATTAGTGTTGCTCTAACTTAGACTTTAAAGCACTCATACTTCAGTACATGCC
 
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rJMSF052F06+ TCATGGTAGCCTAGACAATTGGTTATATTATGAAAATCAATCATTGGACATCATGCAAAG
                      ____________________________________________________________
consensus TCATGGTAGCCTAGACAATTGGTTATATTATGAAAATCAATCATTGGACATCATGCAAAG
 
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rJMSF052F06+ ATTAAACATAATGATTGATGTGGCATGTGGGTTAGAGTATTTGCACTATGGTAACAACAT
                      ____________________________________________________________
consensus ATTAAACATAATGATTGATGTGGCATGTGGGTTAGAGTATTTGCACTATGGTAACAACAT
 
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rJMSF050L03+ AAGCCAAGTAATGTATTACTTGATGAAGATATGGTGGG
rJMSF052F06+ TCCAGTTGTTCATTGTGATCTAAAGCCAAGTAATGTATTACTTGATGAAGATATGGTGGG
                      ____________________________________________________________
consensus TCCAGTTGTTCATTGTGATCTAAAGCCAAGTAATGTATTACTTGATGAAGATATGGTGGG
 
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rJMSF050L03+ ACATGTAAGTGATTTTGGGGATCTCAAAGTTACTTGGAGATGATAGATCAATTGCTTATA
rJMSF052F06+ ACATGTAAGTGATTTT-GGGATCTCAAAGTTACTTGGAGATGATAGATCAATTGCTTATA
                      ____________________________________________________________
consensus ACATGTAAGTGATTTTGGGGATCTCAAAGTTACTTGGAGATGATAGATCAATTGCTTATA
 
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rJMSF050L03+ CCTGTACCATGGCTACAACTGGATATATTGCCCCAGGTGATGATAAGTATACTATGTTTC
rJMSF052F06+ CCTGTACCATGGCTACAACTGGATATATTGCCCCAGGTGATGATAAGTATACTATGTTTC
                      ____________________________________________________________
consensus CCTGTACCATGGCTACAACTGGATATATTGCCCCAGGTGATGATAAGTATACTATGTTTC
 
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rJMSF050L03+ ATCTTTATTAATTTGTTTCATTTTAAGAAAATATTATTTTGCATAGATTATAACTTTTTT
rJMSF052F06+ ATCTTTATTAATTTGTTTCATTTTAAGAAAATATTATTTTGCATAGATTATAATTTTTTT
                      ____________________________________________________________
consensus ATCTTTATTAATTTGTTTCATTTTAAGAAAATATTATTTTGCATAGATTATAATTTTTTT
 
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rJMSF050L03+ AAGAAAATATTATTTTTCATAGATTATAACGTATTATTAAACAAGGATTGGTAATCTTAC
rJMSF052F06+ AAGAAAATATTATTTTTCATAGATTATAACGTATTATTAAACAAGGATTGGTAATCTTAC
                      ____________________________________________________________
consensus AAGAAAATATTATTTTTCATAGATTATAACGTATTATTAAACAAGGATTGGTAATCTTAC
 
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rJMSF050L03+ ATTTCATTTGTTTTGTGTTTGTGCCAGAGTATGGATCAAGAGGAATGGTTTCCACAAGAT
rJMSF052F06+ ATTTCATTTGTTTTGTGTTTGTGCCAGAGTATGGATCAAGAGGAATGGTTTCCACAAGAT
                      ____________________________________________________________
consensus ATTTCATTTGTTTTGTGTTTGTGCCAGAGTATGGATCAAGAGGAATGGTTTCCACAAGAT
 
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rJMSF050L03+ GTGACGTTTATAGTTATGGAATAATGTTAATGGAAGTTTTCACAAGGAAGCGTCCAAGTA
rJMSF052F06+ GTGACGTTTATAGTTATGGAATAATGTTAATGGAAGTTTTCACAAGGAAGCGTCCAAGTA
                      ____________________________________________________________
consensus GTGACGTTTATAGTTATGGAATAATGTTAATGGAAGTTTTCACAAGGAAGCGTCCAAGTA
 
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rJMSF050L03+ ATGAAATGTTTTCAGGAGACCTTAGTTTAAAGAGTTGGGTTTATAATTCACTTTCTAGCA
rJMSF052F06+ ATGAAATGTTTTCAGGAGACCTTAGTTTAAAGAGTTGGGTTTATAATTCACTTTCTAGCA
                      ____________________________________________________________
consensus ATGAAATGTTTTCAGGAGACCTTAGTTTAAAGAGTTGGGTTTATAATTCACTTTCTAGCA
 
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rJMSF050L03+ CTCCTGAATTGATTGTGGACTCTACCTTATTAAGGGCCGAAGAATTGCAATTTAGTCAAA
rJMSF052F06+ CTCCTGAATTGATTGTGGACTCTACCTTATTAAGGGCCGAAGAATTGCAATTTAGTCAAA
                      ____________________________________________________________
consensus CTCCTGAATTGATTGTGGACTCTACCTTATTAAGGGCCGAAGAATTGCAATTTAGTCAAA
 
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rJMSF050L03+ AATTGCAATGCATATCAACTATTTTGGAGTTGGCTTTGAATTGCACAGTGGAATCTCCTG
rJMSF052F06+ AATTGCAATGCATATCAACTATTTTGGAGTTGGCTTTGAATTGCACAGTGGAATCTCCTG
                      ____________________________________________________________
consensus AATTGCAATGCATATCAACTATTTTGGAGTTGGCTTTGAATTGCACAGTGGAATCTCCTG
 
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rJMSF050L03+ AAGAGAGGGTTGATATTCGAGTTGTCTTGACAAAACTCAACAAGATCAAACGTCAATTGC
rJMSF052F06+ AAGAGAGGGTTGATATTCGAGTTGTCTTGACAAAACTCAACAAGATCAAACGTCAATTGC
                      ____________________________________________________________
consensus AAGAGAGGGTTGATATTCGAGTTGTCTTGACAAAACTCAACAAGATCAAACGTCAATTGC
 
. : . : . : . : . : . :
rJMSF050L03+ TCACAATTTTATAAGAATTTATGGTATGTTAGTTACATTTGTTTTAGCATGTCATATCAA
rJMSF052F06+ TCACAATTTTATAAGAATTTATGGTATGTTAGTTACATTTGTTTTAGCATGTCATATCAA
                      ____________________________________________________________
consensus TCACAATTTTATAAGAATTTATGGTATGTTAGTTACATTTGTTTTAGCATGTCATATCAA
 
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rJMSF050L03+ TATATTTGTACTTGTAACCTTGAGTTTGTTATTGAAGACTATTCCGAAAACCA
rJMSF052F06+ TATATTTGTACTTGTAA-CTTGAGTTTGTTATTGAAGACTATTCCGAAAACCAATATGTG
                      ____________________________________________________________
consensus TATATTTGTACTTGTAACCTTGAGTTTGTTATTGAAGACTATTCCGAAAACCAATATGTG