Contig 005847:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028E19Sequence672020011ref|XP_004235524.1|6e-40PREDICTED: pumilio homolog 23 isoform X1 [Solanum lycopersicum] ref|XP_010318450739005847 (2)ref|XP_009788916.1|1e-122PREDICTED: pumilio homolog 23-like isoform X2 [Nicotiana sylvestris]
JMSF051K14Sequence657017967ref|XP_006342891.1|2e-73PREDICTED: pumilio homolog 23-like isoform X1 [Solanum tuberosum] ref|XP_0063428733005847 (2)ref|XP_009606553.1|9e-26PREDICTED: pumilio homolog 23 [Nicotiana tomentosiformis] ref|XP_009606554.1| PR

Alignment

This contig is upended


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rJMSF028E19-                                                               TAGATTG
                      ____________________________________________________________
consensus                                                                  TAGATTG
 
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rJMSF028E19-          ACTTGATTTGGGCGGAGCTTGGAACTAAATTTAAGGACCTACTTGAAATGGGCCGCTCTG
                      ____________________________________________________________
consensus             ACTTGATTTGGGCGGAGCTTGGAACTAAATTTAAGGACCTACTTGAAATGGGCCGCTCTG
 
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rJMSF028E19-          GAGTAGTTGCTTCTCTTGTTGCTGCAACTCAAAAGCTCCATCACTGTGAAGAAGAGTGTT
                      ____________________________________________________________
consensus             GAGTAGTTGCTTCTCTTGTTGCTGCAACTCAAAAGCTCCATCACTGTGAAGAAGAGTGTT
 
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rJMSF028E19-          GTCAGGCACTTGCTTCCGCTGTTTGTGTAGAAAATGAGCCTCTCATGTGCATTATTCCAC
                      ____________________________________________________________
consensus             GTCAGGCACTTGCTTCCGCTGTTTGTGTAGAAAATGAGCCTCTCATGTGCATTATTCCAC
 
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rJMSF028E19-          GCATACTGTTTCTTGACAATTATTTTAGATCTGAAGACAAATCTAACTGGAGTTGGCCAA
                      ____________________________________________________________
consensus             GCATACTGTTTCTTGACAATTATTTTAGATCTGAAGACAAATCTAACTGGAGTTGGCCAA
 
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rJMSF028E19-          ATGGCACCAGGATCCATGTTGTTGGCTCTTTGATCCTGCAGTCAATTTTTAGATTCCCCA
                      ____________________________________________________________
consensus             ATGGCACCAGGATCCATGTTGTTGGCTCTTTGATCCTGCAGTCAATTTTTAGATTCCCCA
 
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rJMSF028E19-          GTGAATTGATAAAGGCTTTCATTTCCGGTATCACATCTTTGGAAGAGCATCAACTTCTTG
                      ____________________________________________________________
consensus             GTGAATTGATAAAGGCTTTCATTTCCGGTATCACATCTTTGGAAGAGCATCAACTTCTTG
 
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rJMSF028E19-          AAGCATCTAAAGATCCCAGTGGTTCACGTGTTATTGAAGCATTTCTAAACTCAAATGTTT
                      ____________________________________________________________
consensus             AAGCATCTAAAGATCCCAGTGGTTCACGTGTTATTGAAGCATTTCTAAACTCAAATGTTT
 
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rJMSF028E19-          CTGCAAAACATAAGAGGAAGCTATTGATCAAGCTTCAAGGACATTTTGGTGAACTCTCAG
                      ____________________________________________________________
consensus             CTGCAAAACATAAGAGGAAGCTATTGATCAAGCTTCAAGGACATTTTGGTGAACTCTCAG
 
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rJMSF028E19-          TTCATCCATTGGGATCGTTTATGATTGAGAAATGCTTCAATGCAAGCAACTTGCCTCTAA
                      ____________________________________________________________
consensus             TTCATCCATTGGGATCGTTTATGATTGAGAAATGCTTCAATGCAAGCAACTTGCCTCTAA
 
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rJMSF028E19-          GGGAGAAAATTATTTCAGAGATGTTACCATTGCAAGCTGAGTTGTCGAGAACAAAGCAGG
rJMSF051K14+                                                         AGAACAAAGCAGG
                      ____________________________________________________________
consensus             GGGAGAAAATTATTTCAGAGATGTTACCATTGCAAGCTGAGTTGTCGAGAACAAAGCAGG
 
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rJMSF028E19-          GACCTTACCTACTTAGGAGATTTGACGTTGATGGATATGCAAAACAACCGGATATATGGA
rJMSF051K14+          GACCTTACCTACTTAGGAGATTTGACGTTGATGGATATGCAAAACAACCGGATATATGGA
                      ____________________________________________________________
consensus             GACCTTACCTACTTAGGAGATTTGACGTTGATGGATATGCAAAACAACCGGATATATGGA
 
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rJMSF028E19-          AATCAAGACAAGCTTCGCAACAATCTGCCAGACAGGAATTTTATGCTGAATTTGGAGCTA
rJMSF051K14+          AATCAAGACAAGCTTCGCAACAATCTGCCAGACAGGAATTTTATGCTGAATTTGGAGCTA
                      ____________________________________________________________
consensus             AATCAAGACAAGCTTCGCAACAATCTGCCAGACAGGAATTTTATGCTGAATTTGGAGCTA
 
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rJMSF028E19-          CTGGTACCAAAT                                                
rJMSF051K14+          CTGGTACCAAATCAAGAAAAGATAGCTTTCTTGCAGATACACACAAATCACAGCCAGAAA
                      ____________________________________________________________
consensus             CTGGTACCAAATCAAGAAAAGATAGCTTTCTTGCAGATACACACAAATCACAGCCAGAAA
 
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rJMSF051K14+          AGTTGAAAGAAATGAGGAAAGAGATTGAGACCAGTTTTGCTTCTTCCCGAACTTCCAGTA
                      ____________________________________________________________
consensus             AGTTGAAAGAAATGAGGAAAGAGATTGAGACCAGTTTTGCTTCTTCCCGAACTTCCAGTA
 
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rJMSF051K14+          TCCCATTTTTGGCTTACCAGGGTTCAAAGGCTAAAACAAAGAAGTCGGCCAAGAAGCAAC
                      ____________________________________________________________
consensus             TCCCATTTTTGGCTTACCAGGGTTCAAAGGCTAAAACAAAGAAGTCGGCCAAGAAGCAAC
 
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rJMSF051K14+          CATCTGAAAGTGGAGGATTTGCTAAGCATTCAGTGAATGATGATTTTTTGAAAGGGAAAA
                      ____________________________________________________________
consensus             CATCTGAAAGTGGAGGATTTGCTAAGCATTCAGTGAATGATGATTTTTTGAAAGGGAAAA
 
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rJMSF051K14+          ACAAAAAACGAAGAACTGAAAAGGGTAACGATGGGATTGATAGTACCTGTGCGGGAGGAA
                      ____________________________________________________________
consensus             ACAAAAAACGAAGAACTGAAAAGGGTAACGATGGGATTGATAGTACCTGTGCGGGAGGAA
 
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rJMSF051K14+          GTGAGTATGATGAACCCTCAAAATCTGGAGACAAAAATGAGAAGAAAAGACAAAGAAGAG
                      ____________________________________________________________
consensus             GTGAGTATGATGAACCCTCAAAATCTGGAGACAAAAATGAGAAGAAAAGACAAAGAAGAG
 
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rJMSF051K14+          AAGAAAAAGAAAAGAAAAGAAAAAGGAAAGATGAAAACTCAAAGTCATCTAAAAAGAAGA
                      ____________________________________________________________
consensus             AAGAAAAAGAAAAGAAAAGAAAAAGGAAAGATGAAAACTCAAAGTCATCTAAAAAGAAGA
 
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rJMSF051K14+          AAAATGTTAAAGGGTGAAAGTTGGACATTTCAAGGGTTCCCTACGGCCACCTCCTTCGCA
                      ____________________________________________________________
consensus             AAAATGTTAAAGGGTGAAAGTTGGACATTTCAAGGGTTCCCTACGGCCACCTCCTTCGCA
 
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rJMSF051K14+          ATTCACTTGCTTGACTGACCAGCATTTTTGTTTTGTTTTCTTTGTAAACAGGGTTAGTAT
                      ____________________________________________________________
consensus             ATTCACTTGCTTGACTGACCAGCATTTTTGTTTTGTTTTCTTTGTAAACAGGGTTAGTAT
 
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rJMSF051K14+          GCCCATTTTTCTGGGGTGCAGAATACTCAATGTCCTTAGCCTGTTCTTTATGAAATNATA
                      ____________________________________________________________
consensus             GCCCATTTTTCTGGGGTGCAGAATACTCAATGTCCTTAGCCTGTTCTTTATGAAATNATA