Contig 005844:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN031I14Sequence597005844 (10)ref|XP_010556278.1|115PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]
JMSF023L19Sequence679005844 (10)ref|XP_010556278.1|114PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]679005844 (10)ref|XP_010556278.1|114PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]
JMSF030H24Sequence672005844 (10)ref|XP_010556278.1|115PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]618005844 (10)ref|XP_010556278.1|109PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]
JMSF033N06Sequence679005844 (10)ref|XP_010556278.1|114PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]687005844 (10)ref|XP_006357191.1|117PREDICTED: uncharacterized protein LOC102602305 [Solanum tuberosum]
JMSF051C08Sequence677005483 (2)ref|XP_008452860.1|5e-126PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis melo]730005844 (10)ref|XP_010556278.1|114PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]
JMSF051F04Sequence679005844 (10)ref|XP_010556278.1|114PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]704005844 (10)emb|CDP16686.1|2e-27unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF030H24-                                                           GAGAGCCTCTAG
                      ____________________________________________________________
consensus                                                             GAGAGCCTCTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN031I14-                   AGTTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTCTTCTC
JMSF030H24-           CCATTTCCAGTTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTCTTCTC
rJMSF023L19+                    TTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTTTTCTC
JMSF023L19-                     TTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTCTTCTC
JMSF051F04-                   AGTTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTCTTCTC
JMSF033N06-                   AGTTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTCTTCTC
rJMSF051C08+                                                                    TC
                      ____________________________________________________________
consensus             CCATTTCCAGTTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTCTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN031I14-           CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
JMSF030H24-           CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
rJMSF023L19+          CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
JMSF023L19-           CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
JMSF051F04-           CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
JMSF033N06-           CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
rJMSF033N06+              TCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
rJMSF051C08+          CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
                      ____________________________________________________________
consensus             CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN031I14-           TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
JMSF030H24-           TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
rJMSF023L19+          TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
JMSF023L19-           TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
JMSF051F04-           TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
JMSF033N06-           TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
rJMSF033N06+          TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
rJMSF051C08+          TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
rJMSF051F04+                          AAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
                      ____________________________________________________________
consensus             TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN031I14-           TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
JMSF030H24-           TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
rJMSF023L19+          TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
JMSF023L19-           TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
JMSF051F04-           TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
JMSF033N06-           TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
rJMSF033N06+          TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
rJMSF051C08+          TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
rJMSF030H24+                                          GCAATTCCGAGCTCATGTCCGTCGTCTG
rJMSF051F04+          TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
                      ____________________________________________________________
consensus             TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN031I14-           CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
JMSF030H24-           CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
rJMSF023L19+          CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
JMSF023L19-           CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
JMSF051F04-           CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
JMSF033N06-           CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
rJMSF033N06+          CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
rJMSF051C08+          CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
rJMSF030H24+          CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
rJMSF051F04+          CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
                      ____________________________________________________________
consensus             CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN031I14-           GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
JMSF030H24-           GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
rJMSF023L19+          GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
JMSF023L19-           GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
JMSF051F04-           GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
JMSF033N06-           GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
rJMSF033N06+          GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
rJMSF051C08+          GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
rJMSF030H24+          GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
rJMSF051F04+          GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
                      ____________________________________________________________
consensus             GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN031I14-           CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
JMSF030H24-           CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
rJMSF023L19+          CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
JMSF023L19-           CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
JMSF051F04-           CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
JMSF033N06-           CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
rJMSF033N06+          CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
rJMSF051C08+          CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
rJMSF030H24+          CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
rJMSF051F04+          CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
                      ____________________________________________________________
consensus             CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN031I14-           GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
JMSF030H24-           GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
rJMSF023L19+          GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
JMSF023L19-           GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
JMSF051F04-           GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
JMSF033N06-           GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
rJMSF033N06+          GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
rJMSF051C08+          GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
rJMSF030H24+          GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
rJMSF051F04+          GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
                      ____________________________________________________________
consensus             GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN031I14-           TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
JMSF030H24-           TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
rJMSF023L19+          TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
JMSF023L19-           TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
JMSF051F04-           TAGGCGAATGGCCTTTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
JMSF033N06-           TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
rJMSF033N06+          TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
rJMSF051C08+          TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
rJMSF030H24+          TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
rJMSF051F04+          TAGGCGAATGGCCTTTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
                      ____________________________________________________________
consensus             TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN031I14-           CNATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACNAGGATTC
JMSF030H24-           CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
rJMSF023L19+          CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
JMSF023L19-           CNATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
JMSF051F04-           CNATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
JMSF033N06-           CNATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
rJMSF033N06+          CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
rJMSF051C08+          CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
rJMSF030H24+          CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
rJMSF051F04+          CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
                      ____________________________________________________________
consensus             CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN031I14-           TGGT                                                        
JMSF030H24-           TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGNTTCATGTCCTCTAATCT
rJMSF023L19+          TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
JMSF023L19-           TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGNTTCATGTCCTCTAATCT
JMSF051F04-           TGGTTGACTTTGCTTTTGAAGANGCTTCTTATCCCTGTAAGGNTTCATGTCCTCTAATCT
JMSF033N06-           TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
rJMSF033N06+          TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
rJMSF051C08+          TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
rJMSF030H24+          TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
rJMSF051F04+          TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
                      ____________________________________________________________
consensus             TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF023L19+          TCCCAATGCACTTAACTCTCTCTATT                                  
JMSF023L19-           TCCCAATGCACTTAACTCTCTCTATT                                  
JMSF051F04-           TCCCAATGCACTTAACTCTCTCTATT                                  
JMSF033N06-           TCCCAATGCACTTAACTCTCTCTATT                                  
rJMSF033N06+          TCCCAATGCACTTAACTCTCTCTATTTTTCTGTGATTTCTTCTTAATGCACATGTAATTG
rJMSF051C08+          TCCCAATGCACTTAACTCTCTCTATTTTTCTGTGATTTCTTCTTAATGCACATGTAATTG
rJMSF030H24+          TCCCAATGCACTTAACTCTCTCTATTTTTCTGTGATTTCTTCTTAATGCACATGTAATTG
rJMSF051F04+          TCCCAATGCACTTAACTCTCTCTATTTTTCTGTGATTTCTTCTTAATGCACATGTAATTG
                      ____________________________________________________________
consensus             TCCCAATGCACTTAACTCTCTCTATTTTTCTGTGATTTCTTCTTAATGCACATGTAATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033N06+          CTTGCTTTTCTTGTTGCTTTCTGAGTTGT                               
rJMSF051C08+          CTTGCTTTTCTTGTTGCTTTCTGAGTTGTTAGACATCATCTAGTATCTTATGTAAAATAG
rJMSF030H24+          CTTGCTTTTCTTGTTGCTTTCTGAGTTGTTAGACATCATCTAGTATCTTATGTAAAATAG
rJMSF051F04+          CTTGCTTTTCTTGTTGCTTTCTGAGTTGTTAGACATCATCTAGTATCTTATGTAAAATAG
                      ____________________________________________________________
consensus             CTTGCTTTTCTTGTTGCTTTCTGAGTTGTTAGACATCATCTAGTATCTTATGTAAAATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF051C08+          TTGATGT                                                     
rJMSF030H24+          TTGATGTTGTAAGTCCATCATAAGACCAATGAC                           
rJMSF051F04+          TTGATGTTGTAAGTCCATCATAAGACCAATGACATGATGTTTCATCCTTACAATGTAAGG
                      ____________________________________________________________
consensus             TTGATGTTGTAAGTCCATCATAAGACCAATGACATGATGTTTCATCCTTACAATGTAAGG