| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF050L18 | Sequence | 690 | 002472 (3) | ref|XP_009623873.1| | 5e-85 | PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Nicotiana tomentos | 763 | 005840 (3) | ref|XP_010258660.1| | 1e-95 | PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Nelumbo nucifera] |
| JMSF051L18 | Sequence | 597 | 005840 (3) | ref|XP_009623873.1| | 2e-77 | PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Nicotiana tomentos | |||||
| JMSF052B15 | Sequence | 716 | 002472 (3) | ref|XP_009623873.1| | 8e-95 | PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Nicotiana tomentos | 889 | 005840 (3) | ref|XP_010258660.1| | 1e-122 | PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Nelumbo nucifera] |
This contig is upended
. : . : . : . : . : . :
rJMSF052B15+ TCAATTCCATCATCTGAGCCACCTCATGGATGGCAACAAGTGAATGGGTATGATGC
____________________________________________________________
consensus TCAATTCCATCATCTGAGCCACCTCATGGATGGCAACAAGTGAATGGGTATGATGC
. : . : . : . : . : . :
rJMSF052B15+ TGTTCAAGCACAGGCCATGGCTGGTGTGTACCCATCAGAGTGGCAGGATTACCAATATGC
____________________________________________________________
consensus TGTTCAAGCACAGGCCATGGCTGGTGTGTACCCATCAGAGTGGCAGGATTACCAATATGC
. : . : . : . : . : . :
rJMSF052B15+ TGAGCAAGTGGCCTACCCTGATCAATACCTCCAGCAAAACTTACAGACTTATGATATGCA
rJMSF050L18+ CTGATCAATACCTCCAGCNAAACTTACAGACTTTTGATATGCA
____________________________________________________________
consensus TGAGCAAGTGGCCTACCCTGATCAATACCTCCAGCAAAACTTACAGACTTTTGATATGCA
. : . : . : . : . : . :
rJMSF051L18+ ACAAGAAGAAAAGGATAGNGG
rJMSF052B15+ AACTGGTTTAAACATTCAGCAAGACCCGCGTTTTATGACACAAGAAGAAAAGGATAGAGG
rJMSF050L18+ AACTGGNTTAAACATTCAGCAAGACCCGCGTTTTATGACACAAGAAGAAAAGGATAGAGG
____________________________________________________________
consensus AACTGGTTTAAACATTCAGCAAGACCCGCGTTTTATGACACAAGAAGAAAAGGATAGAGG
. : . : . : . : . : . :
rJMSF051L18+ CTTAGGGTCAGTGTTTAAGAGAGATGATCAGAGGCTTCTACAATTGAGAGAGAGAGATGC
rJMSF052B15+ CTTAGGGTCAGTGTTTAAGAGAGATGATCAGAGGCTTCTACAATTGAGAGAGAGAGATGC
rJMSF050L18+ CTTAGGGTCAGTGTTTAAGAGAGATGATCAGAGGCTTCTACAATTGAGAGAGAGAGATGC
____________________________________________________________
consensus CTTAGGGTCAGTGTTTAAGAGAGATGATCAGAGGCTTCTACAATTGAGAGAGAGAGATGC
. : . : . : . : . : . :
rJMSF051L18+ TCGGGAGAAGGATCCCAATTTTGTATCTGAGAGCTATTCCGAGTGCTATCCTGGTTACCA
rJMSF052B15+ TCGGGAGAAGGATCCCAATTTTGTATCTGAGAGCTATTCCGAGTGCTATCCTGGTTACCA
rJMSF050L18+ TCGGGAGAAGGATCCCAATTTTGTATCTGAGAGCTATTCCGAGTGCTATCCTGGTTACCA
____________________________________________________________
consensus TCGGGAGAAGGATCCCAATTTTGTATCTGAGAGCTATTCCGAGTGCTATCCTGGTTACCA
. : . : . : . : . : . :
rJMSF051L18+ AGAGTACAATCGTGAGATTGTTGACAGTGATGATGAAGCTGATTTGTCAAAGATGGATAT
rJMSF052B15+ AGAGTACAATCGTGAGATTGTTGACAGTGATGATGAAGCTGATTTGTCAAAGATGGATAT
rJMSF050L18+ AGAGTACAATCGTGAGATTGTTGACAGTGATGATGAAGCTGATTTGTCAAAGATGGATAT
____________________________________________________________
consensus AGAGTACAATCGTGAGATTGTTGACAGTGATGATGAAGCTGATTTGTCAAAGATGGATAT
. : . : . : . : . : . :
rJMSF051L18+ GGGCGGACGTGCAAAAGGCCGACTTCATCGGTGGGACTTTGAGNCCGAAGAGGAGTGGGC
rJMSF052B15+ GGGCGGACGTGCAAAAGGCCGACTTCATCGGTGGGACTTTGAGACCGAAGAGGAGTGGGC
rJMSF050L18+ GGGCGGACGTGCAAAAGGCCGACTTCATCGGTGGGACTTTGAGACCGAAGAGGAGTGGGC
____________________________________________________________
consensus GGGCGGACGTGCAAAAGGCCGACTTCATCGGTGGGACTTTGAGACCGAAGAGGAGTGGGC
. : . : . : . : . : . :
rJMSF051L18+ AACCTACAATGAACAAAAGGAAGCAATGCCGAAAGCTGCATTCCAGTTTGGTGTGAAGAT
rJMSF052B15+ AACCTACAATGAACAAAAGGAAGCAATGCCGAAAGCTGCATTCCAGTTTGGTGTGAAGAT
rJMSF050L18+ AACCTACAATGAACAAAAGGAAGCAATGCCGAAAGCTGCATTCCAGTTTGGTGTGAAGAT
____________________________________________________________
consensus AACCTACAATGAACAAAAGGAAGCAATGCCGAAAGCTGCATTCCAGTTTGGTGTGAAGAT
. : . : . : . : . : . :
rJMSF051L18+ GCANGACGGGAGGAAGACAAGAAAGCAAAACAAAGACCAGAAACTCACTAATGAGCTCCA
rJMSF052B15+ GCAAGACGGGAGGAAGACAAGAAAGCAAAACAAAGACCAGAAACTCACTAATGAGCTCCA
rJMSF050L18+ GCAAGACGGGAGGAAGACAAGAAAGCAAAACAAAGACCAGAAACTCACTAATGAGCTCCA
____________________________________________________________
consensus GCAAGACGGGAGGAAGACAAGAAAGCAAAACAAAGACCAGAAACTCACTAATGAGCTCCA
. : . : . : . : . : . :
rJMSF051L18+ TAAGATCAACAAAATCCTATCCAGAAAGAAGATGGAGGAGAAAGGGGATATCAACGAGGA
rJMSF052B15+ TAAGATCAACAAAATCCTATCCAGAAAGAAGATGGAGGAGAAAGGGGATATCAACGAGGA
rJMSF050L18+ TAAGATCAACAAAATCCTATCCAGAAAGAAGATGGAGGAGAAAGGGGATATCAACGAGGA
____________________________________________________________
consensus TAAGATCAACAAAATCCTATCCAGAAAGAAGATGGAGGAGAAAGGGGATATCAACGAGGA
. : . : . : . : . : . :
rJMSF051L18+ TGACTCGCACCCGGGAAAGAAACTTCGAATTTGATGTTCAAACAGTTTGATTTCTTGTAT
rJMSF052B15+ TGACTCGCACCCGGGAAAGAAACTTCGAATTTGATGTTCAAACAGTTTGATTTCTTGTAT
rJMSF050L18+ TGACTCGCACCCGGGAAAGAAACTTCGAATTTGATGTTCAAACAGTTTGATTTCTTGTAT
____________________________________________________________
consensus TGACTCGCACCCGGGAAAGAAACTTCGAATTTGATGTTCAAACAGTTTGATTTCTTGTAT
. : . : . : . : . : . :
rJMSF051L18+ GATTTTGTAATGAGAAAAGGTCTCTTTAGTTTCTGATAAACTACCTTGGATTAGGTAATG
rJMSF052B15+ GATTTTGTAATGAGAAAAGGTCTCTTTAGTTTCTGATAAACTACCTTGGATTAGGTAATG
rJMSF050L18+ GATTTTGTAATGAGAAAAGGTCTCTTTAGTTTCTGATAAACTACCTTGGATTAGGTAATG
____________________________________________________________
consensus GATTTTGTAATGAGAAAAGGTCTCTTTAGTTTCTGATAAACTACCTTGGATTAGGTAATG
. : . : . : . : . : . :
rJMSF051L18+ CCAGTATTTCTGCAGTGATTGA
rJMSF052B15+ CCAGTATTTCTGCAGTGATTGATGAAGTTAGTAGGTTCAAGAGATTGACCTTCCTTTTTC
rJMSF050L18+ CCAGTATTTCTGCAGTGATTGATGAAGTTAGTAGGTTCAAGAGATTGACCTTCCTTTTTC
____________________________________________________________
consensus CCAGTATTTCTGCAGTGATTGATGAAGTTAGTAGGTTCAAGAGATTGACCTTCCTTTTTC
. : . : . : . : . : . :
rJMSF052B15+ ACTGAAAGGCTTTGTGCAAAGCCTTTAGCATAACAAGGACCTCATAATGTAAT
rJMSF050L18+ ACTGAAAGGCTTTGTGCAAAGCCTTTAGCATAACAAGGACCTCATAATGTAATGGTACTA
____________________________________________________________
consensus ACTGAAAGGCTTTGTGCAAAGCCTTTAGCATAACAAGGACCTCATAATGTAATGGTACTA